MELO3C032753.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032753.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr07: 17073246 .. 17076013 (+)
RNA-Seq ExpressionMELO3C032753.jh1
SyntenyMELO3C032753.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGTTTGTGAAGCTTTAGTTGCCAAGTCTACCGTGTGTAATGTAAAAGTACAAGGCCGTCATTTCAAAAGCACTCCGCCACGGTAAACATATTAACTTTCGTCTGAAAATCGCAGGAACGATCTTCTGAAAGTACGCATGTGCCTGATCATGAAGATGTTGGTGCTGAAAGTGCTGCGACAATAGTTGAAACTGCTCTTAGTGTCTCTGAGAATAATATTTCAAATATGAATTCGAACGAGCAAGATGATGTACCTTTGGCTAAACTATTGAAGAAAGGCTTCATCTCCAATGTTGCTACTACAAATTCTGTCATGTCAACTCGGTCTCATGAAAGTTCTCTTTTAAAGATTTGTTTGTTCCTACACTTGGTCTTCACCATGCGTAAAATGCTGAACTTGGTTCATCACGACATGCACCACCTGTTAGGTCATCAGTTTCGGTTGAGGTTACTGCTTCTAATCCGACTTCAGAACTTGTACTTGATCCTACTGATGAATTTACTAAGAATGTGGAAAGGACTGATGTTCCTTCTGTTGGGACTCCTATTGATGGTGAAAATATTGACCATGTTAACACTGTACAACCAATACTGTTGAACCAGCTGTTGGTGATGGTTTTCAACCTGAGACTCAACAATCTCCGGGAGTCACTAGGACAAAGAGGAAGAAGTTTCAGCAAAATCGGGGTAACATCACCACGATAACTGGAAGGAAGAAGGTTTCCTTAAACATTTCATCTGTTTCAATTGATGGAATCTCGTTTCACCTTGAAGAAAATGTTCAACGATGGAAATATATTGTGAAGCGAAGGATAGCAGATGAGGTAAATGTTTATGATAAACATCATTCTTGTTTAAGTGTCATGAGTCTTATTGAGAAGGCATATCTTTTCAAGACTATATCAAACGTTGAGTCGTTCTATCCTAAACTGCTTAGGGAATTTATTGTAAATTTTCCATATGATTTTAATGACCCGAGTAGTCCTAACTACCAGACGGTTCACATCCGGGGCTTAAAATTTAAGATTTCTCCTACAGTAATTAATAGGTTCTGGATAATAATGTTGAATCTGCTTGTTCGTCGTCTAACCCATTTAATGAAGTTTTGGCATCAATATTGTCTGGAGGGACTCTATCTACTTGGCCTGTAAATGGGATTCCTACGGTTGCTCTAAGTGTCGAATATGCCATTCTTCATGAAATTGGTATTGCAAACTGGTTCCCATCATCACATGCTTCCAGTGTCTCTATTGCCTTGGGAACATTTTTGTATCAGATATGTAATGAAGACACCATAGATACAGGCTCCTTTATATATAACCAGCTTCTAAGGCAAGTGGAAACATATGGTGTCAAAATACCTATTGCTTTACCACGCTTCTTCTCTACTTTATTACTATATCTGGATACTGCTGTTTTAACACCGACTGATGCCCTTGAACCTAAGTCGAAGACCTTATCTCTGAGTTATAAACTCTTTCAAGGTAGTCATGTGTCTAAATAGAGCATGACATGCACCCTTCACGAGCTCCTCGCATGTTTGTCATAGATGATTGGGATGAGAGCGCTGAAGGTTTCTTTGTTAATCGAGACTTAGCCTCCAAGATCGTGAATACTCCTACAGTTGAGTCTTGAGCTCTCTCTACTTCCATCAATTTGCTATCTGAACGACGGTTAGAGGTTGATTCGCTCATTCGTCACCTAAAATCATCAGTTCCTTCTACTAGTATGGGGGAGCATGGTCGTGAGTGATATTTCTTTTTGATTCAAAGGGGGAGTAGAGGAAGACTACAGATAGAGATGGGCGGTTGCATCAGAAGGAGACAGAAGAAAGACTGTTGTTTTTGTTTTTTACCTTTAGCCATTGTTGGGCTGTTAGTTTTTTTTTTCTTTTGTGATTATCAAAGTTTGATGATGGTTGAACTTATTCAAGTTAGTTCAGTTTCACAGTGATGTTTTGAAGTTTTTTTTTATCTTGTTGGTTAAAAATTGACTGGAATGAAATGATGTACGAGTCAGCCATTATTAGAAGTTTATGGTGTTAGTAGTAGTAGTATTGTGTGCGTTGTTCTAATGATGATGGTGCTGATATGTCGTGCTGCTATATCTTCGTTAGTCCTCTGTTCCATAGGATGGTTCTAAGAAGCGGTTAATTTGAACCAGAAAAGAAATCTCCTCTTTTAGACAAAAGGGGGAGTTTGTTGGGATTTTGTTTAAAAGATATTATAAGATTATCTTTCTAAAATAAGACAATTAGCTTTTTGAAAAGATAAAAAGATTCTCCTTTATTTTAAGAATCTTGCATTTATATCTTTGTGAAAATATATATCTGTTAACATGTGGGGCAATATGTTGATTTATGACAGTTATCATGAGAAGTAAAGCATACAACTCCATAGCGATTCAAGAGGTTACAAAAAACTTCAAAAAAGGATGACAGGATTGTCGAAGAGATTCACTCATGCTTTCAATGGGAGCTTGAAGTCAAACATTGTTGAGAAAGTTTACTCATGCATTTAGGGGGAGCCTATAGTCTGAAGTTAATGAGCATGTGAATTTGTCATATAGTTGAACAAATGATATATGTTGTATTGATGTGTATTGACTAAGTGTGAATCTTAATAATATTACTCATCAGGGCCGTGCACAGCTCTCCCAACGTAGGCAATATTGGCCGAACTGGGTTACCAAAATTCTTGTGTTATTCTTTTCTACTATCCTTCTAGCTGTTATGATAGTCATTGACTTTAGATTTAACTAA

mRNA sequence

ATGGAAGAGGTTTGTGAAGCTTTAGTTGCCAAGTCTACCGTGTGTAATGAACGATCTTCTGAAAGTACGCATGTGCCTGATCATGAAGATGTTGGTGCTGAAAGTGCTGCGACAATAGTTGAAACTGCTCTTAGTGTCTCTGAGAATAATATTTCAAATATGAATTCGAACGAGCAAGATGATGTACCTTTGGCTAAACTATTGAAGAAAGGCTTCATCTCCAATGTTGCTACTACAAATTCTGTCATGTCAACTCGGTCTCATGAAAGTTCTCTTTTAAAGATTTGTTTGTTCCTACACTTGGTCTTCACCATGCGTAAAATGCTGAACTTGGTTCATCACGACATGCACCACCTGTTAGGTCATCAGTTTCGGTTGAGGTTACTGCTTCTAATCCGACTTCAGAACTTGTACTTGATCCTACTGATGAATTTACTAAGAATGTGGAAAGGACTGATGTTCCTTCTGTTGGGACTCCTATTGATGCTGTTGGTGATGGTTTTCAACCTGAGACTCAACAATCTCCGGGAGTCACTAGGACAAAGAGGAAGAAGTTTCAGCAAAATCGGGGTAACATCACCACGATAACTGGAAGGAAGAAGGTTTCCTTAAACATTTCATCTGTTTCAATTGATGGAATCTCGTTTCACCTTGAAGAAAATGTTCAACGATGGAAATATATTGTGAAGCGAAGGATAGCAGATGAGGTAAATGTTTATGATAAACATCATTCTTGTTTAAGTGTCATGAGTCTTATTGAGAAGGCATATCTTTTCAAGACTATATCAAACGTTGAGTCGTTCTATCCTAAACTGCTTAGGGAATTTATTGTAAATTTTCCATATGATTTTAATGACCCGAGTAGTCCTAACTACCAGACGGTTCACATCCGGGGCTTAAAATTTAAGATTTCTCCTACAGTAATTAATAGGTTCTGGATAATAATGTTGAATCTGCTTGTTCGTCGTCTAACCCATTTAATGAAGTTTTGGCATCAATATTGTCTGGAGGGACTCTATCTACTTGGCCTGTAAATGGGATTCCTACGGTTGCTCTAAGTGTCGAATATGCCATTCTTCATGAAATTGGTATTGCAAACTGGTTCCCATCATCACATGCTTCCAGTGTCTCTATTGCCTTGGGAACATTTTTGTATCAGATATGTAATGAAGACACCATAGATACAGGCTCCTTTATATATAACCAGCTTCTAAGGCAAGTGGAAACATATGGTGTCAAAATACCTATTGCTTTACCACGCTTCTTCTCTACTTTATTACTATATCTGGATACTGCTGTTTTAACACCGACTGATGCCCTTGAACCTAAGTCGAAGACCTTATCTCTGAGTTATAAACTCTTTCAAGGTAGTCATGTGTCTAAATAGAGCATGACATGCACCCTTCACGAGCTCCTCGCATGTTTGTCATAGATGATTGGGATGAGAGCGCTGAAGGTTTCTTTGTTAATCGAGACTTAGCCTCCAAGATCAGGAAGACTACAGATAGAGATGGGCGGTTGCATCAGAAGGAGACAGAAGAAAGACTGTTTTTATGGTGTTAGTAGTAGTAGTATTGTGTGCGTTGTTCTAATGATGATGGTGCTGATATGTCGTGCTGCTATATCTTCGTTAGTCCTCTGTTCCATAGGATGGTTCTAAGAAGCGTTATCATGAGAAGTAAAGCATACAACTCCATAGCGATTCAAGAGGGCCGTGCACAGCTCTCCCAACGTAGGCAATATTGGCCGAACTGGGTTACCAAAATTCTTGTGTTATTCTTTTCTACTATCCTTCTAGCTGTTATGATAGTCATTGACTTTAGATTTAACTAA

Coding sequence (CDS)

ATGGAAGAGGTTTGTGAAGCTTTAGTTGCCAAGTCTACCGTGTGTAATGAACGATCTTCTGAAAGTACGCATGTGCCTGATCATGAAGATGTTGGTGCTGAAAGTGCTGCGACAATAGTTGAAACTGCTCTTAGTGTCTCTGAGAATAATATTTCAAATATGAATTCGAACGAGCAAGATGATGTACCTTTGGCTAAACTATTGAAGAAAGGCTTCATCTCCAATGTTGCTACTACAAATTCTGTCATGTCAACTCGGTCTCATGAAAGTTCTCTTTTAAAGATTTGTTTGTTCCTACACTTGGTCTTCACCATGCGTAAAATGCTGAACTTGGTTCATCACGACATGCACCACCTGTTAGGTCATCAGTTTCGGTTGAGGTTACTGCTTCTAATCCGACTTCAGAACTTGTACTTGATCCTACTGATGAATTTACTAAGAATGTGGAAAGGACTGATGTTCCTTCTGTTGGGACTCCTATTGATGCTGTTGGTGATGGTTTTCAACCTGAGACTCAACAATCTCCGGGAGTCACTAGGACAAAGAGGAAGAAGTTTCAGCAAAATCGGGGTAACATCACCACGATAA

Protein sequence

MEEVCEALVAKSTVCNERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVATTNSVMSTRSHESSLLKICLFLHLVFTMRKMLNLVHHDMHHLLGHQFRLRLLLLIRLQNLYLILLMNLLRMWKGLMFLLLGLLLMLLVMVFNLRLNNLRESLGQRGRSFSKIGVTSPR
Homology
[Close]
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match: XP_008462943.1 (PREDICTED: uncharacterized protein LOC103501207 [Cucumis melo])

HSP 1 Score: 134 bits (337), Expect = 1.51e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 17  ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 76
           ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV
Sbjct: 49  ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 108

Query: 77  ATTNSVMSTRS 87
           ATTNSVMSTRS
Sbjct: 109 ATTNSVMSTRS 119

[Close]
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match: KAA0061381.1 (uncharacterized protein E6C27_scaffold749G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 5.01e-33
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 17  ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 76
           ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV
Sbjct: 194 ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 253

Query: 77  ATTNSVMSTRSHES 90
           ATTNSVMSTRS  S
Sbjct: 254 ATTNSVMSTRSSVS 267

[Close]
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match: TYK08882.1 (uncharacterized protein E5676_scaffold1411G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.79e-12
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0 

Query: 28  HEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVATTNSV---MS 87
           H+DV A+SAA  VETA SVS+ +I NM+S+EQDDVPLA+LLKKGF+ NVA+T SV   +S
Sbjct: 134 HDDVVAKSAAKGVETAPSVSKTHILNMDSDEQDDVPLARLLKKGFVLNVASTKSVNPIIS 193

Query: 88  TRSHESS 91
            RS ESS
Sbjct: 194 ARSQESS 200

[Close]
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match: TYK09582.1 (uncharacterized protein E5676_scaffold458G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 9.78e-12
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 19 SSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVAT 78
          +SES H+P HE V   SAA  V  A SVSE +IS+M+S+E+DDVPLA+LLKKGF  NVA+
Sbjct: 6  ASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFAFNVAS 65

Query: 79 TNS---VMSTRS 87
            S   V+S RS
Sbjct: 66 AKSTDLVISARS 77

[Close]
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match: KAA0060145.1 (uncharacterized protein E6C27_scaffold542G00020 [Cucumis melo var. makuwa] >TYK19510.1 uncharacterized protein E5676_scaffold1836G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.55e-11
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 21  ESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVATTN 80
           ES HVP HE++   SAA  VE A SVS+ +IS+M+S++QD+VPL +LLKKGF SNVA   
Sbjct: 31  ESYHVPKHEEITTGSAAKGVENAPSVSKTHISDMDSDKQDNVPLVRLLKKGFASNVAPAK 90

Query: 81  SV---MSTRSHESS 91
           S    +S RS ESS
Sbjct: 91  SADPTISARSQESS 104

[Close]
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CJM5 (uncharacterized protein LOC103501207 OS=Cucumis melo OX=3656 GN=LOC103501207 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 7.33e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 17  ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 76
           ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV
Sbjct: 49  ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 108

Query: 77  ATTNSVMSTRS 87
           ATTNSVMSTRS
Sbjct: 109 ATTNSVMSTRS 119

[Close]
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6M2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00670 PE=4 SV=1)

HSP 1 Score: 135 bits (339), Expect = 2.42e-33
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 17  ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 76
           ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV
Sbjct: 194 ERSSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNV 253

Query: 77  ATTNSVMSTRSHES 90
           ATTNSVMSTRS  S
Sbjct: 254 ATTNSVMSTRSSVS 267

[Close]
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CC65 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1411G00040 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.83e-12
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0 

Query: 28  HEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVATTNSV---MS 87
           H+DV A+SAA  VETA SVS+ +I NM+S+EQDDVPLA+LLKKGF+ NVA+T SV   +S
Sbjct: 134 HDDVVAKSAAKGVETAPSVSKTHILNMDSDEQDDVPLARLLKKGFVLNVASTKSVNPIIS 193

Query: 88  TRSHESS 91
            RS ESS
Sbjct: 194 ARSQESS 200

[Close]
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CE78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00080 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.74e-12
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 19 SSESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVAT 78
          +SES H+P HE V   SAA  V  A SVSE +IS+M+S+E+DDVPLA+LLKKGF  NVA+
Sbjct: 6  ASESYHLPKHEKVADGSAAKGVGNAPSVSETHISDMDSDEKDDVPLARLLKKGFAFNVAS 65

Query: 79 TNS---VMSTRS 87
            S   V+S RS
Sbjct: 66 AKSTDLVISARS 77

[Close]
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V2P0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1836G00020 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.24e-11
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 21  ESTHVPDHEDVGAESAATIVETALSVSENNISNMNSNEQDDVPLAKLLKKGFISNVATTN 80
           ES HVP HE++   SAA  VE A SVS+ +IS+M+S++QD+VPL +LLKKGF SNVA   
Sbjct: 31  ESYHVPKHEEITTGSAAKGVENAPSVSKTHISDMDSDKQDNVPLVRLLKKGFASNVAPAK 90

Query: 81  SV---MSTRSHESS 91
           S    +S RS ESS
Sbjct: 91  SADPTISARSQESS 104

The following BLAST results are available for this feature:
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462943.11.51e-33100.00PREDICTED: uncharacterized protein LOC103501207 [Cucumis melo][more]
KAA0061381.15.01e-3397.30uncharacterized protein E6C27_scaffold749G00670 [Cucumis melo var. makuwa][more]
TYK08882.13.79e-1265.67uncharacterized protein E5676_scaffold1411G00040 [Cucumis melo var. makuwa][more]
TYK09582.19.78e-1258.33uncharacterized protein E5676_scaffold458G00080 [Cucumis melo var. makuwa][more]
KAA0060145.12.55e-1156.76uncharacterized protein E6C27_scaffold542G00020 [Cucumis melo var. makuwa] >TYK1... [more]
BLAST of MELO3C032753.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CJM57.33e-34100.00uncharacterized protein LOC103501207 OS=Cucumis melo OX=3656 GN=LOC103501207 PE=... [more]
A0A5A7V6M22.42e-3397.30Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... [more]
A0A5D3CC651.83e-1265.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CE784.74e-1258.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2P01.24e-1156.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C032753.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032753.jh1.t1MELO3C032753.jh1.t1mRNA