MELO3C032724.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032724.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGlobal transcription factor
Locationchr07: 14192309 .. 14192524 (-)
RNA-Seq ExpressionMELO3C032724.jh1
SyntenyMELO3C032724.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGGGAAAACCTAGGCCTTTCCCGATGCCTTACTTGCCTTTCCCGACGCACACTTACGGCGTCGGAAAAACCTACGCCTTGGGCATACCCCTTATTTCTCATGTGAGGCTTGTCCCGATGCATTACTTACGGCATCGGGAATATCCCTTATTTCCCGACGTCTTGTGTCCGACGCATGAATTGTGCGTCAGGAAAACCTCTTATTCCTGA

mRNA sequence

ATGGCGTCGGGAAAACCTAGGCCTTTCCCGATGCCTTACTTGCCTTTCCCGACGCACACTTACGGCGTCGGAAAAACCTACGCCTTGGGCATACCCCTTATTTCTCATGTGAGGCTTGTCCCGATGCATTACTTACGGCATCGGGAATATCCCTTATTTCCCGACGTCTTGTGTCCGACGCATGAATTGTGCGTCAGGAAAACCTCTTATTCCTGA

Coding sequence (CDS)

ATGGCGTCGGGAAAACCTAGGCCTTTCCCGATGCCTTACTTGCCTTTCCCGACGCACACTTACGGCGTCGGAAAAACCTACGCCTTGGGCATACCCCTTATTTCTCATGTGAGGCTTGTCCCGATGCATTACTTACGGCATCGGGAATATCCCTTATTTCCCGACGTCTTGTGTCCGACGCATGAATTGTGCGTCAGGAAAACCTCTTATTCCTGA

Protein sequence

MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTHELCVRKTSYS
Homology
BLAST of MELO3C032724.jh1 vs. NCBI nr
Match: KAA0053449.1 (transcription factor GTE8-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 4.24e-47
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT
Sbjct: 144 MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 203

Query: 61  HELCVRKTSYS 71
           HELCVRKTSYS
Sbjct: 204 HELCVRKTSYS 214

BLAST of MELO3C032724.jh1 vs. NCBI nr
Match: TYK14842.1 (transcription factor GTE10 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 2.56e-38
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRPFP       THTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT
Sbjct: 138 MASGKPRPFP-------THTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 197

Query: 61  HELCVRKTSYS 71
           HELC+RKTSYS
Sbjct: 198 HELCIRKTSYS 201

BLAST of MELO3C032724.jh1 vs. NCBI nr
Match: KAA0045152.1 (global transcription factor [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 6.50e-35
Identity = 60/71 (84.51%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRPFP  YL FPTHTYGVGKTY LGIPLISHVRLVP HYLRH EYP FP+VLCPT
Sbjct: 156 MASGKPRPFPTLYLSFPTHTYGVGKTYVLGIPLISHVRLVPTHYLRHWEYPFFPNVLCPT 215

Query: 61  HELCVRKTSYS 71
           HEL V K SYS
Sbjct: 216 HELFVGKISYS 226

BLAST of MELO3C032724.jh1 vs. NCBI nr
Match: TYK00324.1 (uncharacterized protein E5676_scaffold1923G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 1.99e-30
Identity = 58/71 (81.69%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MAS KP+PFP       THTYGVGKTYALGIPLISHVRLVP HYLR REYPLF DVLCPT
Sbjct: 174 MASEKPKPFP-------THTYGVGKTYALGIPLISHVRLVPTHYLRRREYPLFSDVLCPT 233

Query: 61  HELCVRKTSYS 71
           HELCV KTSYS
Sbjct: 234 HELCVGKTSYS 237

BLAST of MELO3C032724.jh1 vs. NCBI nr
Match: TYK08286.1 (global transcription factor [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 3.03e-30
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 2   ASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTH 61
           ASGKPR FP  YLPFPTHTY V KTYALGIPLISHVRLVP HYL  REYPLF DVL PT+
Sbjct: 59  ASGKPRSFPTHYLPFPTHTYDVKKTYALGIPLISHVRLVPTHYLWRREYPLFSDVLWPTY 118

Query: 62  ELCVRKTSYS 71
           +LC  KTS S
Sbjct: 119 KLCAGKTSDS 128

BLAST of MELO3C032724.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UJ17 (Transcription factor GTE8-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001270 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 2.05e-47
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT
Sbjct: 144 MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 203

Query: 61  HELCVRKTSYS 71
           HELCVRKTSYS
Sbjct: 204 HELCVRKTSYS 214

BLAST of MELO3C032724.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CTR7 (Transcription factor GTE10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00070 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 1.24e-38
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRPFP       THTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT
Sbjct: 138 MASGKPRPFP-------THTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 197

Query: 61  HELCVRKTSYS 71
           HELC+RKTSYS
Sbjct: 198 HELCIRKTSYS 201

BLAST of MELO3C032724.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TP57 (Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001530 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 3.15e-35
Identity = 60/71 (84.51%), Postives = 61/71 (85.92%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MASGKPRPFP  YL FPTHTYGVGKTY LGIPLISHVRLVP HYLRH EYP FP+VLCPT
Sbjct: 156 MASGKPRPFPTLYLSFPTHTYGVGKTYVLGIPLISHVRLVPTHYLRHWEYPFFPNVLCPT 215

Query: 61  HELCVRKTSYS 71
           HEL V K SYS
Sbjct: 216 HELFVGKISYS 226

BLAST of MELO3C032724.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BM25 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G00020 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 9.62e-31
Identity = 58/71 (81.69%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 1   MASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPT 60
           MAS KP+PFP       THTYGVGKTYALGIPLISHVRLVP HYLR REYPLF DVLCPT
Sbjct: 174 MASEKPKPFP-------THTYGVGKTYALGIPLISHVRLVPTHYLRRREYPLFSDVLCPT 233

Query: 61  HELCVRKTSYS 71
           HELCV KTSYS
Sbjct: 234 HELCVGKTSYS 237

BLAST of MELO3C032724.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CD66 (Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00660 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.47e-30
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 2   ASGKPRPFPMPYLPFPTHTYGVGKTYALGIPLISHVRLVPMHYLRHREYPLFPDVLCPTH 61
           ASGKPR FP  YLPFPTHTY V KTYALGIPLISHVRLVP HYL  REYPLF DVL PT+
Sbjct: 59  ASGKPRSFPTHYLPFPTHTYDVKKTYALGIPLISHVRLVPTHYLWRREYPLFSDVLWPTY 118

Query: 62  ELCVRKTSYS 71
           +LC  KTS S
Sbjct: 119 KLCAGKTSDS 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053449.14.24e-47100.00transcription factor GTE8-like isoform X3 [Cucumis melo var. makuwa][more]
TYK14842.12.56e-3888.73transcription factor GTE10 isoform X2 [Cucumis melo var. makuwa][more]
KAA0045152.16.50e-3584.51global transcription factor [Cucumis melo var. makuwa][more]
TYK00324.11.99e-3081.69uncharacterized protein E5676_scaffold1923G00020 [Cucumis melo var. makuwa][more]
TYK08286.13.03e-3078.57global transcription factor [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UJ172.05e-47100.00Transcription factor GTE8-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5D3CTR71.24e-3888.73Transcription factor GTE10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TP573.15e-3584.51Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BM259.62e-3181.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CD661.47e-3078.57Global transcription factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032724.jh1.t1MELO3C032724.jh1.t1mRNA