MELO3C032690 (gene) Melon (DHL92) v4

Overview
NameMELO3C032690
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNeurochondrin isoform X4
Locationchr07: 11616566 .. 11619423 (+)
RNA-Seq ExpressionMELO3C032690
SyntenyMELO3C032690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGGAAGGCTGATATGAAGAAAGAAGTAGGTCTTTATGTTTCATGCCCACCAACTGTTTGTTGTTTGTTCTGCTTTTGGGTTCTCTTGTGTTTTACTGTGTAATTGGATTCGCTCTGTTGTTGGATTGATTTGGGAATGTGGGTTTTGCAATGTGGTGATTTTTGTGTAAGGGGCGGGTTAATATGTTTCTATTTGATCTTTTTTGTTGACGTCATGAGGATATGTATATGTAGTATCCTCATCATACTAACCGAACCAAGATTTATCAAGTGGGCATACCTTATCAATGTTTCGTTTAATGTGTGCATTAACAACTTTGACTAAATTGAAGTGTAATGTACATGAAACTTCTTAAATTTGAACTTAATGACACTAATACTTTTCCTTCAAAATATAACATGTATACTGGAACGTCTGGGCACATGTATATTTTGGTTCCTCATGTTGGTGTTGTGAACTCTGAAACTTTTTATTTATTACTTTTTCCAGATTGAAGTTCTTAATCAGTGAGCATTTGGGTTTGCACATAGGTTGTAAAATGCCTTATAAATTTGATTCACAAGCACGGTGGTTAGATTGACAATGATGGATCCATCTTCTTGCCTTGTGATACAATCTTGAATGTGCTTCTGAAGGTACTCATCTAGTAAACTACTGTAGTATGAAATTCTGTTTATATTGTCTCTTTAAGTTATTGATTGGTTACCATTTGATTTTCCATTTTTGGTAAATTTGGTATCCACAATGTAACAAGTTTTTTGTTTATGCTTGCAAGATGTTTGATCAAATGTCTCCAAAATCAAATGTTAATTCATAAGGTGTTTTTGTTCTAATTTTTTGTGTTCTTTGAATGGGGCTGAACTTCTCCTAGTGCAAATGACCAATGTGAGTGATTTTTCAGCAGAATTAAACTTGTGCCATTGGTTTAGCTAAATTTTGGTCTCCACAATGTAACAAGTTTTTTATGGAGTAAATTATTGCTAATTCATTGGTATTATGCATAAATTATTGCTAATTTATTTGGTTTGAACTTTGATGTTTCTTTCCTTCCAAGTAATGGGAATAAAAAGGGACAGCTTCAGAATGATTCTAACTGGGTAGATGGTGACAGCTTCAGTGTCTAATGTTCCCTTCCTTTCACTTGAGATAGAAATCAATTAGCATATTGAAGATCAGAGCAAAAAGGAGGAAAATGTGGTTATGTTATAAATCTCAAATTTTGGCAGTTTTTGAAAACATTGGTTGAAACTAGATCATAAACCAAAAAATTTAAAGGTGTAGTGAGTGTTCATAGGCCTAATTTTCAAAGGTAACTAAGTGAGGGCTCAGGAAATGTTCCTTTATGGTTTTTTCAACAGGGAGTCTAAAAAAACGAATCCTTAATCGGCTTGTGTTTTATACCTTGAAAGACCAGGGATGGGAGGCACATATTCTCCTTTGGGAATCATACAACTGAGATTTAGACAATTCTAATTCTGAAAGTAGTATCTCTCTGTATATGAGGTATAAAATAAAAATTCCAATGGCTTTTGCGTGCATGTTCATTATGTTTTCAGGGCTTCTCTTGTTCGTATGCCCTCTACATATATCTGAATGACCAAGTCTTTTCTAGAGTTCTAATTGCATCTGATCTTTTCTCCTATTATCAATAATGACTCTGGGTGCTTGTAATATGAAATCTGTTGGTGCATATCAGATATTTTCCTCAGGATGTTGTTTGCACGCAGTTTTGCTAACTACCTATTTGTTGGTCAGTATTTTCTTCTTTTATATTTATTTTTGTGTACCATGTTTGTAGTTTTATTATTTGAGGCAGTAGTAAAGGGAAGTAATAATGCTCAGATACATCTTTGGAAGTAATATTGCTTATTCATCTTGGAAGTGGTAAAGGGAATAAATATTTGATTTTACTGAATTGTTTCTTCTGTAGGGTTTTGCGCCATTGTTGGGTAAGTTTGATTTTACTGAATTGTTTCTTCTCTTTGAATCCTCTGTTATTTGTTCTTCTGCGCCATTGTTGGGTAAGTTTCAACCTTCAATTCTTAATTATATGTTTTGTATTTTCAGTTCCTTTGATGTTTATGCTCTGTTGCTTGGGATGTTTCTTTAGCTTGTTTTACTTTTGATGTTTAATTTGGGCCTTAATAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTGTCTAATGCAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATAGAAAAGAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGTGAAGGTAATTTAGATTTTATTTGTCTTTGTCTTGGATTAAGTACTATTTTTATGGTCAGTTTCTGACAGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGCCAGGAAGAAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATTAGCTTATTTTTAATAGTTGTTAGTTGATTTCTCTGACTAAATAAGTTTTGAACATACTTTGTTGTTGTAATGTTATCTTCTTCTTGTAGATTGGTTCTTCTGTTGGTGGTACTTATTTTAGCTCATGAATTGAAGATAGAGGATGCAAATGCAAGTTTATTTGAAGCCAAGTTTTATCCAAAGTTATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTATTTCTTGAACTAGAATTGTAGTCTTCTGATTTTTGGAACAACATAGTTTGGTTAGTTTTGTAATTTTGGAATTATCATATTAAGTTGGGTAGATAGAA

mRNA sequence

ATGTCGAGGAAGGCTGATATGAAGAAAGAAGTAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATAGAAAAGAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGTGAAGATTGGTTCTTCTGTTGGTGGTACTTATTTTAGCTCATGAATTGAAGATAGAGGATGCAAATGCAAGTTTATTTGAAGCCAAGTTTTATCCAAAGTTATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTATTTCTTGAACTAGAATTGTAGTCTTCTGATTTTTGGAACAACATAGTTTGGTTAGTTTTGTAATTTTGGAATTATCATATTAAGTTGGGTAGATAGAA

Coding sequence (CDS)

ATGTCGAGGAAGGCTGATATGAAGAAAGAAGTAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATAGAAAAGAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGTGAAGATTGGTTCTTCTGTTGGTGGTACTTATTTTAGCTCATGA

Protein sequence

MSRKADMKKEVGLQKKCIYKSRFAMHECYTKHRKEVESCLPYANINNVVKIGSSVGGTYFSS
Homology
[Close]
BLAST of MELO3C032690 vs. NCBI nr
Match: TYK05898.1 (neurochondrin isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 11  VGLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           +GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 141 LGLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 193

[Close]
BLAST of MELO3C032690 vs. NCBI nr
Match: XP_008465395.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 12  GLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 62  GLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

[Close]
BLAST of MELO3C032690 vs. NCBI nr
Match: KAA0037285.1 (neurochondrin isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 12  GLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 94  GLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 145

[Close]
BLAST of MELO3C032690 vs. NCBI nr
Match: XP_008465396.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X2 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 33/51 (64.71%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 12 GLQKKCIYKSRFAMHECYTKHRKEVESCLPYANINNVVKIGSSVGGTYFSS 63
          GLQKKCIYKSRFAMHECYTKH KE               IGS+VGG YFSS
Sbjct: 62 GLQKKCIYKSRFAMHECYTKHGKE---------------IGSAVGGNYFSS 97

[Close]
BLAST of MELO3C032690 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-04
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 27  ECYTKHRKEVESCLPY-ANINNVVKIGSSVGGTYFSS 63
           +C   + KEVESCLP  ANINNV KIGS+VGGTYFSS
Sbjct: 107 QCTNAYTKEVESCLPSDANINNVAKIGSAVGGTYFSS 143

[Close]
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match: A0A5D3C3W9 (Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1085G00080 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 11  VGLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           +GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 141 LGLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 193

[Close]
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match: A0A5A7T743 (Neurochondrin isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold68G00200 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.5e-18
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 12  GLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 94  GLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 145

[Close]
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match: A0A1S3CQA2 (uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.5e-18
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 12  GLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 62  GLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

[Close]
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match: A0A1S3CNT1 (uncharacterized protein LOC103503025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 33/51 (64.71%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 12 GLQKKCIYKSRFAMHECYTKHRKEVESCLPYANINNVVKIGSSVGGTYFSS 63
          GLQKKCIYKSRFAMHECYTKH KE               IGS+VGG YFSS
Sbjct: 62 GLQKKCIYKSRFAMHECYTKHGKE---------------IGSAVGGNYFSS 97

[Close]
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 27  ECYTKHRKEVESCLPY-ANINNVVKIGSSVGGTYFSS 63
           +C   + KEVESCLP  ANINNV KIGS+VGGTYFSS
Sbjct: 107 QCTNAYTKEVESCLPSDANINNVAKIGSAVGGTYFSS 143

The following BLAST results are available for this feature:
BLAST of MELO3C032690 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05898.11.2e-1790.57neurochondrin isoform X1 [Cucumis melo var. makuwa][more]
XP_008465395.11.5e-1792.31PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo][more]
KAA0037285.11.5e-1792.31neurochondrin isoform X4 [Cucumis melo var. makuwa][more]
XP_008465396.11.2e-0664.71PREDICTED: uncharacterized protein LOC103503025 isoform X2 [Cucumis melo][more]
TYK03061.14.3e-0472.97putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C032690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C3W95.7e-1890.57Neurochondrin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7T7437.5e-1892.31Neurochondrin isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A1S3CQA27.5e-1892.31uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CNT15.9e-0764.71uncharacterized protein LOC103503025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5D3BTL52.1e-0472.97Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MELO3C032690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032690.1MELO3C032690.1mRNA