MELO3C032668 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032668
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon gag protein
Location	chr07: 10325373 .. 10326014 (-)
RNA-Seq Expression	MELO3C032668
Synteny	MELO3C032668

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTTCTTCCAAGGAAAATGAGACCAAAGCTAAAGAGAGAGATGACAAAGAGAAGCATCATCCAACTCTTAAAGAAAGGCAGGAGAAATTTTATCTATTTCCTAACTTTAATGTTGTAGATATGTCAGAGCGGCTGCTAGAAAAACAACTTATTCAACTGTCAGAATGCAAATGACCAGGACAAGCAAGAAAAGTAGATGATCTTAACTAATGTAAGTACCATTGGGTCATTAGTCACCTGTTGAGAAGTACTTCGTGTTAAAGGAGCTAATTCTAAAGTTAACTTATGAAAAGAAGATCGAACTAGATATTGATGAAGTAACTCAAACGAATCATGTTGCAGTCAAGATGACTTCAGGTATTCCCATATCAACATCACTTTATGATCAAAGGAAAAATGTGATTTAGTTAATTGGGACTTTTGAACCCTATAGCTGTTCGATTCCAACAAAAGATCATGTTGATAGACTCTCAAAACAAAGAAGAGCCTATGGTAGGGATGGATAGTCATGACTCATCGAAAAGGGAGACAACCAAATTCCATTCAAAAGGAGTTCTCATTCCATCAAAAGCATGGAAAAGGAAGCAACTCTCACAAAAAGAAGGGGAAAAGAAACAAGAAGATGTGGAAGCCTAG

mRNA sequence

ATGAAATTTTCTTCCAAGGAAAATGAGACCAAAGCTAAAGAGAGAGATGACAAAGAGAAGCATCATCCAACTCTTAAAGAAAGGCAGGAGAAATTTTATCTATTTCCTAACTTTAATTCACCTGTTGAGAAGTACTTCGTGTTAAAGGAGCTAATTCTAAAGTTAACTTATGAAAAGAAGATCGAACTAGATATTGATGAAGTAACTCAAACGAATCATGTTGCAGTCAAGATGACTTCAGCTGTTCGATTCCAACAAAAGATCATGTTGATAGACTCTCAAAACAAAGAAGAGCCTATGGTAGGGATGGATAGTCATGACTCATCGAAAAGGGAGACAACCAAATTCCATTCAAAAGGAGTTCTCATTCCATCAAAAGCATGGAAAAGGAAGCAACTCTCACAAAAAGAAGGGGAAAAGAAACAAGAAGATGTGGAAGCCTAG

Coding sequence (CDS)

ATGAAATTTTCTTCCAAGGAAAATGAGACCAAAGCTAAAGAGAGAGATGACAAAGAGAAGCATCATCCAACTCTTAAAGAAAGGCAGGAGAAATTTTATCTATTTCCTAACTTTAATTCACCTGTTGAGAAGTACTTCGTGTTAAAGGAGCTAATTCTAAAGTTAACTTATGAAAAGAAGATCGAACTAGATATTGATGAAGTAACTCAAACGAATCATGTTGCAGTCAAGATGACTTCAGCTGTTCGATTCCAACAAAAGATCATGTTGATAGACTCTCAAAACAAAGAAGAGCCTATGGTAGGGATGGATAGTCATGACTCATCGAAAAGGGAGACAACCAAATTCCATTCAAAAGGAGTTCTCATTCCATCAAAAGCATGGAAAAGGAAGCAACTCTCACAAAAAGAAGGGGAAAAGAAACAAGAAGATGTGGAAGCCTAG

Protein sequence

MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFNSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVEA

Homology

[Close]

BLAST of MELO3C032668 vs. NCBI nr
Match: XP_008444299.1 (PREDICTED: UPF0261 protein BPP1817-like, partial [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 6.0e-44
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN-SPVEKYFVLKELILKLTYEK 60
           MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN SPVEKYFVLKELILKLTYEK
Sbjct: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFNVSPVEKYFVLKELILKLTYEK 60

Query: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVGMDSHDSS 110
           KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMV +   D S
Sbjct: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVEVTIVDVS 110

[Close]

BLAST of MELO3C032668 vs. NCBI nr
Match: KAA0064154.1 (UPF0261 protein y4oU [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 89  MLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 147
           MLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE
Sbjct: 1   MLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 58

[Close]

BLAST of MELO3C032668 vs. NCBI nr
Match: KAA0051326.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-20
Identity = 69/121 (57.02%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 41  PVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKMTSA------------------- 100
           PVEK+FVLKELILKL  E KIE+DIDEV QTNHVAV MTS+                   
Sbjct: 198 PVEKFFVLKELILKLARENKIEMDIDEVAQTNHVAVNMTSSVPLSILLYDQRESLIQFGT 257

Query: 101 -----VRFQQKIMLIDSQNKEEPMVG---MDSHDSSKRETTKFHSKGVLIPSKAWKRKQL 135
                VRFQQKIM  + QNKEEP+     MDS  SSKRET +FHS  V +PSKA+KRK L
Sbjct: 258 FKPILVRFQQKIMTSNFQNKEEPIEDGRRMDSSGSSKRETNEFHSNEVSLPSKAFKRKHL 317

[Close]

BLAST of MELO3C032668 vs. NCBI nr
Match: KAA0032461.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ99906.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-19
Identity = 85/203 (41.87%), Postives = 95/203 (46.80%), Query Frame = 0


Query: 1   MKFSSKENETK-AKERDDKEKHHPTLKERQEKFYLFPN---------------------- 60
           +K  SK  ETK  +  D  EK  PTL+ERQ K YLFP+                      
Sbjct: 284 LKSFSKRKETKHERNHDGNEKRRPTLRERQRKVYLFPDSDVADMLEQLIEKQLIQLPKYK 343

Query: 61  -------------------FNSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKM 120
                               + PVEK FVLKELILKL  E KIELDIDEV QTNHVAV M
Sbjct: 344 RPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNM 403

Query: 121 TSA------------------------VRFQQKIMLIDSQNKEEPMVGMDSH----DSSK 134
           T +                        VRFQQKIM  +SQNKEEP+             K
Sbjct: 404 TLSVPPSILLYDQRKSLIQFGTFEPILVRFQQKIMTSNSQNKEEPIEDEGEEWIVVAHKK 463

[Close]

BLAST of MELO3C032668 vs. NCBI nr
Match: TYK16007.1 (UPF0261 protein BPP1817-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 100 MVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 147
           MVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE
Sbjct: 1   MVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 47

[Close]

BLAST of MELO3C032668 vs. ExPASy TrEMBL
Match: A0A1S3B9K4 (UPF0261 protein BPP1817-like OS=Cucumis melo OX=3656 GN=LOC103487666 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.9e-44
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN-SPVEKYFVLKELILKLTYEK 60
           MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN SPVEKYFVLKELILKLTYEK
Sbjct: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFNVSPVEKYFVLKELILKLTYEK 60

Query: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVGMDSHDSS 110
           KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMV +   D S
Sbjct: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVEVTIVDVS 110

[Close]

BLAST of MELO3C032668 vs. ExPASy TrEMBL
Match: A0A5A7VA93 (UPF0261 protein y4oU OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00780 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.9e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 89  MLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 147
           MLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE
Sbjct: 1   MLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 58

[Close]

BLAST of MELO3C032668 vs. ExPASy TrEMBL
Match: A0A5A7UAU9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00430 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 69/121 (57.02%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 41  PVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKMTSA------------------- 100
           PVEK+FVLKELILKL  E KIE+DIDEV QTNHVAV MTS+                   
Sbjct: 198 PVEKFFVLKELILKLARENKIEMDIDEVAQTNHVAVNMTSSVPLSILLYDQRESLIQFGT 257

Query: 101 -----VRFQQKIMLIDSQNKEEPMVG---MDSHDSSKRETTKFHSKGVLIPSKAWKRKQL 135
                VRFQQKIM  + QNKEEP+     MDS  SSKRET +FHS  V +PSKA+KRK L
Sbjct: 258 FKPILVRFQQKIMTSNFQNKEEPIEDGRRMDSSGSSKRETNEFHSNEVSLPSKAFKRKHL 317

[Close]

BLAST of MELO3C032668 vs. ExPASy TrEMBL
Match: A0A5A7SSD3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00230 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.5e-20
Identity = 85/203 (41.87%), Postives = 95/203 (46.80%), Query Frame = 0


Query: 1   MKFSSKENETK-AKERDDKEKHHPTLKERQEKFYLFPN---------------------- 60
           +K  SK  ETK  +  D  EK  PTL+ERQ K YLFP+                      
Sbjct: 284 LKSFSKRKETKHERNHDGNEKRRPTLRERQRKVYLFPDSDVADMLEQLIEKQLIQLPKYK 343

Query: 61  -------------------FNSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKM 120
                               + PVEK FVLKELILKL  E KIELDIDEV QTNHVAV M
Sbjct: 344 RPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNM 403

Query: 121 TSA------------------------VRFQQKIMLIDSQNKEEPMVGMDSH----DSSK 134
           T +                        VRFQQKIM  +SQNKEEP+             K
Sbjct: 404 TLSVPPSILLYDQRKSLIQFGTFEPILVRFQQKIMTSNSQNKEEPIEDEGEEWIVVAHKK 463

[Close]

BLAST of MELO3C032668 vs. ExPASy TrEMBL
Match: A0A5D3CVR2 (UPF0261 protein BPP1817-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G00020 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 100 MVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 147
           MVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE
Sbjct: 1   MVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVE 47

The following BLAST results are available for this feature:

BLAST of MELO3C032668 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444299.1	6.0e-44	93.64	PREDICTED: UPF0261 protein BPP1817-like, partial [Cucumis melo]	[more]
KAA0064154.1	1.4e-21	100.00	UPF0261 protein y4oU [Cucumis melo var. makuwa]	[more]
KAA0051326.1	2.7e-20	57.02	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032461.1	1.8e-19	41.87	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ99906.1 retrotranspos...	[more]
TYK16007.1	2.6e-15	100.00	UPF0261 protein BPP1817-like protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032668 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032668 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9K4	2.9e-44	93.64	UPF0261 protein BPP1817-like OS=Cucumis melo OX=3656 GN=LOC103487666 PE=4 SV=1	[more]
A0A5A7VA93	6.9e-22	100.00	UPF0261 protein y4oU OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548...	[more]
A0A5A7UAU9	1.3e-20	57.02	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SSD3	8.5e-20	41.87	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CVR2	1.3e-15	100.00	UPF0261 protein BPP1817-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C032668 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032668.1	MELO3C032668.1	mRNA