MELO3C032662 (gene) Melon (DHL92) v4

Overview
NameMELO3C032662
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPre-mRNA-splicing factor CWC25-like protein
Locationchr07: 10191102 .. 10195264 (+)
RNA-Seq ExpressionMELO3C032662
SyntenyMELO3C032662
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGTTTTGGCCCCACCTTCTCATTGGCCCGAGTTTCTGCCTGACCCGGTACGACCCACTTGGTGCCCCGCATGCGTTTGGTAAATTGACATCGATTGATTTAAACAATTGGTTTTAGGTCCAACCTATAAACTGAATCCCTTTCGGGCCAATGAAAGGATGAGGTTTCTTGTTCAAGGCTTGGATTTAGTTCTTAAGAGAACAACCTATCTACTAACCCTAAAGAAGGCATGAGTAAAAAACATGAGAGATTGCCCTAAAATTGGAAGGCTTATTGGGCCACTCTGTTGTGCTATCCTCACCTATACAGATCTAAGGATCATCCTATTTGAATAAAAGTTCATAATTAGCTCGGGATTAAGATTAAGTTCATAATCGACGTGCAGAGATGGAGATTATGAACTCAAATAAAAGTTCATAATTACCACCCACGATTTCATCTCAAACTCAAATTTCCTTCCTTTCTATATGTCTTGTTAGAAATACAAAAGAAAAGTAGAAATCAAACGGACAAAATTTTGTCGTTGGAGCAAAAATTTTCAAGCCAATGTTCTAACGTAAATCCTAATTCTCCCTCAAATTTCTTGATATGATATTCTCTATCTCTCCTTCTTTCTTTTGTTACCTATGTTTCAATTTTTTTAGGTTTCAAAAGAAGATATGGGAGAACTAATTTGCATGACTTTAGTCGTTGCTGCCGGCAACAATATTGGCAAAATACTTTAGAAGAAGGCCACCGTCGTTTTCTTTTTCACATTTTCTAAGTCATTTAATTTCATTCGATTCGTTTTTTATTCCTTCTTGAGTTGTCTGATCGCTAGCAGTATGGTGTTTCTTTGATTCTCAATTTTTCGGATTTCATTAAGGAAGTATGAGAGATTGGATTTGCTTTATGAATTGGGTTTGGTAGTTGGGAAAGCTAGCAATTCCGATGGATTTAAAAGCCAGGAAACCTTACCTAGTTCAACTATTGCCGCGACTGCCACTGAGCCATCTAGTTCCAAGGTACTATTGCGTTTTTTTGCTGATTTGTGTGCTTTGGCTATCTCTCTTTGTATTGTTCAATTATGATGTTTGTTGGATACTGGAGCTCTGTTTGAGGATGAGCCTCATTCTTCCAATGATGCATGGAGGAAACTCCATTCTGATCCTTTGCTCATCATTTAACAACGTGACAATAAGCTCTTGCTCGCGTAAAAATCAATCCTTTGGCTACGATTTGCAAAACTGTAACTAGCTTTTGATCTCCTTTTATGGCTTTAACCTCACTAAACCTTAAAAGTTTTATTCTTATAACATGGGCTATGGAAATTTTATGTCGAAACATCTTTCTTCCTTTCATTATTTTGTAGAGAGATTTTTTGAACTTCTCTCTTAGTTTGTTCATGGACACTTTACTTGGTGACCTATCTAAATTCTAAGTTATTCTTTTGAGTTGATGTGATGAATTTCTCTGTATATCTCTCACTCTTTTGATAGGAGCTAAAGATGAATCTTTGAACAAAAAGTTTTTTTTCTATATTCTTGCTATGTCAATCTTGGCATACAGTAAATGCTTATCATCATTATTTAATCTGTCATTGATTTTTGTTGTAGAGATTAAACTTATCCCTATCCAAAGTAGATTAGAAGACAAGAAAGTAATGGTCGTTTAGTAAATATTTTAGTCTAAAATGGACAAGGTAAAGTAGTGAATACAATTATATTGAACAAAAACTGTATTGAACAAAAACTGAGAAATGATAGATTTCTAGGATTTCTCAAGTTCATAGTGGATTTCTAGGATTTTCTCCAACAATTTTCAATAAATAAACAACCAAATCTTCGAAAATTTTCAATAAATAAACATTTTCTAACACTAACTTTACTGAAAACAAGGAGCCTGACCAATCCCTTTACATTTTTCTATTACCCATTTCTTCTCAATTTTGAAATATAAAAATGCATTCAAGGTGTTTTTATAAACGTTGCTATGATGGAGTTTTGGGTTTTGGGTTTTGTTTCTTATGTGCTTATTGGTTGAGACTTTTGGTGTCTTTGGTTTGATTTTGATTTTTAATTCTAATGGTAAATTGATCTTATAGTGTTGAAAAATTTAGATTATTTGATTTTATGGTGTTGAATATAGTTGTGTTTATTGATACGTGATTATATGTGTTGTAGTTCTATATGGAAGTGTTGAAAATTGCATGTTGACATTTTAGGTGTCGATCTTGTGTGCATTGTAGGTGAAATAGAAATATAATATTTGCCATGGAGGATAACATTTGCAAAATCATGCTTTCTTTGGTTTTTGCTTCGTCTTTGTGCAATTTGCTTGGTAGCTTGAAAGATGGAAATGACCATATAGATAGATGGCCTAGCGATCATTGAAGGGTACCTTGCATTTTTTGTGCTTGATCTATGTATATGATATAATATGATCATGAATACTCTGTACCATGTTAACTTGTTTAAAGTTGGTTGTAATAGTCACATTGTATGCGTGGTCAAAGTCTCTATCAATTGTCATTTCCTAGCTTACTAGTTTATCCGTTTCAGATTGTTAATAGAATCCAGAAGTTGAGGAAGCAAGCTACCCTTGAACCTACAGATACAGTAGAAGTGTATTTTCGATCATAAGATGAGGATACATCAGTAGCACACAGAGACATCAAAGCCCGATTTCTTTTAAATCTTTTGCAGTTTTTTAAACGATGTATATATGGAAAGGTTTATTTTTTGGATTTTTCTTTCCTTATGTTTGTGGGAATTTCTTGTTAATGCTAGGTCCACATCCTCATTTCAACCTAATTTCCAAAGAAACAACCTTCTCTAGTGCTGCAAAGTTCTCGGTTAATGTAATTTTGCCTTGAATCTTCAAAACTCTTGTGTATATCAGCTTTGGTTTGTAGTTGGATAGGACCAATGCCATAAACATGCTTGTACGTTTCTCTCCTTTGGTCGTCCAAACTCGACTTCATAGTTTAACCTTTCCCGCTTATATTAATTCAATGTTGAAATAGTATCAAGTGTCTCTGTTTATAATCTTGCTATCCAAAAAATAAAATACCATAGATTAACATTTTATGCTTCTTCTTCATTTATGTTTTATATATTTGATATTAAGCTCTTTTTGTATGTGTGGAATAGAATAACCATAGATTAACAAGTGCTTTGCTTTAATTGAACAAGTGAACTAGGGGCCTCTGGTTATTGATGTGATTTGTTAAGATGAAGAAGGCCTTTCATCAAATTGTTAAAGACTTGTAAGCTATCTTTTTTGCTTGTGATGCTTTGATGGCATCATTTAAATTTCTTGACTTTAAGTCAAGACACATGATTACTTGTTTTTGCAATCTAATTAACTTTCGTCAAATGATCATTACTAAAGACTTTAAATTAGTGGTCTTGTTTCACAAAAATCATTTTTATTCAATTATTCATTGATTTTGTCAAATATACTTTATGCATTACTCGTTAGATCTTCCTAATAGGTTCCCTCTTCTTTTAATGTAGAAAGAGAGGTAAATATAAGATTGTTCAAGATTCTTAAAATAGAGTAGAAGGTATGTTTTTTTTTGGCTCATCTGTTTTGTTATTGCAAATTGATATGGTATTGCTTCAATTATCTTGTCTTGAAGAATTATATTAGAGTGTGTAGGATTATTTGTTGTACATTTCCTCAATGATATACCTTAAGTCAGATATAACTGTTCTTTTGCCTCTAGCTATTTGATGACCTTTTTTAAATTAATCAACTATCTTTCAGATGACAGATCTTCTTTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGCTTTTCATGAAAGCTATTTGTACTTTTTTATTCAATTGACCTGAATATTTAACTTCTTTTTCTCCTTCATATGTTTGTTAGTGCTCTATAAATATAAAATGATAAAAATGTTCTTTTAGCTTTTACACAATAGTTTCAATGAACGTTTATTTTGATATTGCTTGTAGAATGATTGAAGACATATCAGGTGGAAAGCGAAGCGATTGTGTAGACAACGAGGCTATTGTTGAAGGTTAAAAACTGAGAAGACGTTTAGAATTTCTTGTTTAAGTTTTGTATTAAGATCTTGTTTCATGTACTGTTGTAGAATGTACACAAACACAATATTAAGATGTTATTTTGTGTATACAGATG

mRNA sequence

ATGGATTGGTTTTGGCCCCACCTTCTCATTGGCCCGAGTTTCTGCCTGACCCGGTACGACCCACTTGGTGCCCCGCATGCGTTTGTTGGGAAAGCTAGCAATTCCGATGGATTTAAAAGCCAGGAAACCTTACCTAGTTCAACTATTGCCGCGACTGCCACTGAGCCATCTAGTTCCAAGATTGTTAATAGAATCCAGAAGTTGAGGAAGCAAGCTACCCTTGAACCTACAGATACAGTAGAAGTAATGATTGAAGACATATCAGGTGGAAAGCGAAGCGATTGTGTAGACAACGAGGCTATTGTTGAAGGTTAAAAACTGAGAAGACGTTTAGAATTTCTTGTTTAAGTTTTGTATTAAGATCTTGTTTCATGTACTGTTGTAGAATGTACACAAACACAATATTAAGATGTTATTTTGTGTATACAGATG

Coding sequence (CDS)

ATGGATTGGTTTTGGCCCCACCTTCTCATTGGCCCGAGTTTCTGCCTGACCCGGTACGACCCACTTGGTGCCCCGCATGCGTTTGTTGGGAAAGCTAGCAATTCCGATGGATTTAAAAGCCAGGAAACCTTACCTAGTTCAACTATTGCCGCGACTGCCACTGAGCCATCTAGTTCCAAGATTGTTAATAGAATCCAGAAGTTGAGGAAGCAAGCTACCCTTGAACCTACAGATACAGTAGAAGTAATGATTGAAGACATATCAGGTGGAAAGCGAAGCGATTGTGTAGACAACGAGGCTATTGTTGAAGGTTAA

Protein sequence

MDWFWPHLLIGPSFCLTRYDPLGAPHAFVGKASNSDGFKSQETLPSSTIAATATEPSSSKIVNRIQKLRKQATLEPTDTVEVMIEDISGGKRSDCVDNEAIVEG
Homology
[Close]
BLAST of MELO3C032662 vs. NCBI nr
Match: KAA0034965.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK21320.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 29 VGKASNSDGFKSQETLPSSTIAATATEPSSSK 61
          VGKASNSDGFKS ETLPSSTIAATATEPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]
BLAST of MELO3C032662 vs. NCBI nr
Match: KAA0037864.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK09818.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 29 VGKASNSDGFKSQETLPSSTIAATATEPSSSK 61
          VGKASNSDGFKS ETLPSSTIAATATEPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]
BLAST of MELO3C032662 vs. NCBI nr
Match: TYK21842.1 (pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 29 VGKASNSDGFKSQETLPSSTIAATATEPSSSK 61
          VGKASNSDGFKS ETLPSSTIA TATEPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIATTATEPSSSK 78

[Close]
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match: A0A5D3CF18 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001190 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 29 VGKASNSDGFKSQETLPSSTIAATATEPSSSK 61
          VGKASNSDGFKS ETLPSSTIAATATEPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match: A0A5A7T0H4 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00290 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 29 VGKASNSDGFKSQETLPSSTIAATATEPSSSK 61
          VGKASNSDGFKS ETLPSSTIAATATEPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIAATATEPSSSK 78

[Close]
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match: A0A5D3DE30 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00040 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.4e-05
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 29 VGKASNSDGFKSQETLPSSTIAATATEPSSSK 61
          VGKASNSDGFKS ETLPSSTIA TATEPSSSK
Sbjct: 47 VGKASNSDGFKSLETLPSSTIATTATEPSSSK 78

[Close]
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match: A0A1S4E3L4 (uncharacterized protein LOC103500480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500480 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.0e-04
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 29  VGKASNSDGFKSQETLPSSTIAATATEPSSSKI 62
           VGKASN DGFKS ETL SSTIAATATEPSSSK+
Sbjct: 118 VGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

[Close]
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match: A0A1S3CFU5 (uncharacterized protein LOC103500480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500480 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.0e-04
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 29  VGKASNSDGFKSQETLPSSTIAATATEPSSSKI 62
           VGKASN DGFKS ETL SSTIAATATEPSSSK+
Sbjct: 118 VGKASNFDGFKSLETLLSSTIAATATEPSSSKV 150

The following BLAST results are available for this feature:
BLAST of MELO3C032662 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034965.13.9e-0596.88pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK21320... [more]
KAA0037864.13.9e-0596.88pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK09818... [more]
TYK21842.11.1e-0493.75pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C032662 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CF181.9e-0596.88Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7T0H41.9e-0596.88Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3DE305.4e-0593.75Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4E3L46.0e-0487.88uncharacterized protein LOC103500480 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CFU56.0e-0487.88uncharacterized protein LOC103500480 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MELO3C032662 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032662.1MELO3C032662.1mRNA