MELO3C032646 (gene) Melon (DHL92) v4

Overview
NameMELO3C032646
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptiontRNA pseudouridine(55) synthase
Locationchr07: 9510255 .. 9515830 (+)
RNA-Seq ExpressionMELO3C032646
SyntenyMELO3C032646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGTTATGGTGCCTGATGTGGAGACAAGTAAGGATAGAATGGTAGAGCTAAAAAAGAAGGTTAACATATGCTCATGAATCAATTGAAGAAAGCTAGAGATTTTAGGATTGAATCTCTCAAGAATCACATAGAGAGTCGTGAAATTGCTAAATCAGGTCATACACATGCCATCAAGAATAATGACAAACATAAGGTAGTTTTGCAAGAAAGTCAACTATAAAATTCAACTCTAATTGCATCATTGTCTGTTTAGTAATTGCAGGAGATGATAACTAATTCCATCAAAACTCAATATGGTGGACCTGCTTAGACTTTACTTTTGTATTTCAAGCCATATATGAAGAGGGTTGACATTCTAAGAATATCAAATAGACCACCCAAGTTTCAATAATTTGATGAAAAGGTCAACCCAAAACTGAAATGCTGGTACGTGAGGATATTTTGATGGTCAAATAGTTCGTTCTAACTCTCAAAAGAAACGCCTTCGACTGGTACACTGACCTTGAACTAAAACTATTGATAGTTTAGAGCTTCTTGAGAGAGAGTTTCTCAATCGCTTCTACCGTACTCGGTGTATTGTTAGCATGATAAAGCTAACCGCCACCAAGCAACGAAAGGGTGGGCCAGTTATTAACTATATGAATCCTTAATTGAAAAGATAGATTAAATGAACTGTCAGCGGTGGAAATGTGCCCTCAAGGAATGCATTGGGGGCTCTTATACATATTGCAAGGAATAAAACCTCGCAACTTTGAAGAATTAGCAATTAAAGCTCATGATATAGATCTAAGCATTGCTAATAGAAGGAACAATCTACTAGTTCCAGAAGTAAGAAAGGAAAAGAAAGAAGCGAATAACATCTAGAAGGTATCGAAGCATGCTACCATGGAAGCTATGGTCGTCAATACAACCCATTTAAAGTTTCTTTTTAAGAAAAAAAAAGATTGAAAAATGTCAAGATAAAGGCAAGAAAAGATAGCTAAGATTGAAAGAGGCAAGAAAGGGTTTACCCTTTTTCGGACTCTGACTTACCTGATATATTAGAGTAACTACTGAAAAAATAACTCATTGAACTTCCTAAGTGTAAATGACCTGCAGAAATAGAGATGATAAATGATTCCAATTACTGCAAATATCATCGAGTGTTAGCTATCCCCTAGAAAAATACTTCGCATTGAAAGAGTTGATTGTGAAATTAGCTATAGACAAAAATATTGACCTAGATCTAGATGATGTAATACAAACAAATCATGTCGTAGTAATGATTCATCTTGTTAGTTGATTACCTGCTATAGGGAGTCTGCTCCAATTTGGATCTCTTTAGCTTGTTGTTATATATTCTTTACTAGATGCCTTACAAGTAATGACCTTCAGATTGTTTACTTTGTAGAAAAAAAAAGCAGGTGAATGTTGATGAGGTTATAACTTTCAAGGTGTACCATATCCATCCTGATCTTCTCCTTATCACCTAATCATTCTATCATGCATTCATTATATTATGGAGACTATCCTCTATGTCATTTCTTTTTCTCGTTTTTTACATGCGTTAATTATATTACTCTCATATTGCTTTCTTTTCTTTATAAGGCCTTTTAATTATTTAACCCGTTGGACATAAGAATTTTCTCATTTAATGCTTTTGCTACATGCAATCTTCTCGTTTATTTTATTGTCATATCACATCAACATAATTCTATCCAATTTAGTGGGTGGTAACTCTAGTGGAATATAATCTTAGGATCAAATTGTGGAGTCAGGTCAGACTCATTAACTAGGTTTCTCTTTAATCGGCCCCTCCACAAGGCTCTTTTAAGTTGAACTTTGATGCTGCTGAGATCGACTTGGGTATCTGCAAAAGATTCTAGGAAACAATATTCTTCTCTTTTGTCGAGGTGATAGTTACAAGTTTCATGCTGCTGGTAGAGAGAATGTTGATGTAATATTCTTTCCTTATTTACAATTAAGAAGCTCTCTACTGTTTGTAATATTAAATGTTCTTGCCAGGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACACATGTCTTCTCCCATCTGATGTGATAATAAATGAAATACAGTCAAAGATAAATAGCTCGGAGAATAAATTGGTAAGTTGTTCATATTGTATTGCTTCTTCCTTATATTAAAATTACTACAAACTTCATATGAATCACATTATTATTTCAGGTTGGCGTAAGAAATATGAAAGTTGTAGGTAGCGAGGGTTGGACCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAAGTTTTCTCTATGAGCAATCTTTTTGTCAATTACAAATACAAGTTTCTATTTAATTTTGCATCTGTGACTCTTTAAATCATACAGAAGCAATATGCTTCACTTGTGTGGACATCTCGCCCACTCAAGGATGATGATTTTTTATCAATATCATCACTCAAAAAACTTAGTGAGAAGTTCAGCAAGCTTGATGCTTTGATTTTATAGCTTATTATTGATGCGTTACATTTTAGAACTATGATTGTGAAATTATTTTTTCTTGTGCACAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCATCGAAGTCCATTAGAACGTATAAAGATCATCCACTAGTTAGAGTCATTTTTCAATTGTACAGTGATGCTACAAAGTAAAATCCACTTATGCTTCCACTTAGGGTCACCGACGATGTTCTCTTATTTCATTTTAGGATGAAGATTGAGAAGGTTGCTAAAAGTTCTCAGTATTATCTCCTACATTTGTGTACCTAGGTACAGTCTTTTAAAATTGAATTGAGGCCACGCTTTTTAGGAGAATTTTGGTAACAGAATCATATCATGAAAATCCAGTCATATTGTCTTTGAGTGGCTTTGTTTACATCGTTATTTTTTTTGTCTAGGTTCGTTTTTAGGTTGCCTTCATATATTTATGTTGCTTGAGTGTGGTCTTTTTTTTAGTTTTAGTTTGTATTTTCTCTTATTTTCTGTTACTCTTAGTATTATTTTCTTTTACTCTTAGTATTATTGTATTTTGAGCTTTATATCACATGAGCTTATTGGGTTTTGTTTTTCTGTTCTACTTCTCTGTTACCCACCACTTTCGTTACTTTATTTTACACTACCGCTATGTCCACTAAATCTAAGTATGTTTTTCTACAGGGATGGGTTTTGTTTCTTTTTCTAGTTTTTAAGTGATCGACCTGTCTGCTAAGTGTAATTTTAATTTCAATTCCCAATTTTCTTGGATCTTTTGTTTTGTTAATGACTGTTGCTTTGTTTATTTAGTGTTATTTTATAAACTTGGAGTTTCGATGCAGATTAAATGGATATGTCTAATAGTATTTTAAGTGATTAGACTACTTTAACTTCTATTTCTTTTGCCTCTGCCATTGATTGTTAGTATATTTTGCTGTAATCTTTATTCTTTCCTAAGTTAAGCTTGGTGTAGGAGGGTTCAGTATGGGAGCAACTACAATGCTTTACTTCTTTGTGCTTCTTTTTTGTTTATATGAAAATCTAAAGAAGCATGAATATATTCACTGCCTATGCATTTCTTTTGCATCTGGTCATGTGATTCTATTTTGGTATTCAATTGAGTTGAAGAATTGTGATTGATCTAGTTGATTTTATTCTTTAGATAGTTTAGTTTTAATCTAATATTGGTTGGTTGAATTCAAATAGAAAGTGTAATTCAAAAACACTATACGTGTTGCATAGAACACTATACCTGTAACTCAAATAGAAAGTTGTGGTCTGCTAGTATGTTATTAGAAAGGTGTTCCACTTGTTTTTTTTTCTATTTCCTAGTGCATCTAGCCAATCTTGTTATCAATATGTGATACCAATCCTTTGAAGTGTTTCCTCAGAGGGGACTTGATTGCAAGTGTGTGGAGCAATATAGCTTGTACAATTGAAGTATTCAGCTTCTATTTTCGATGCCTCCCTTTATTATAGTCACACCTTCATGTGTGAATGCAGGATATATGAAACTTTTAGGTTGCTGCTGTGGAAACTAGCTGAAGTTAGTGTTTTCATACCATGGACATGGAGTACTTTGGTAATTTTGTCTCTCTTCTATGCTTAGATTCAATTTACTTTTGATTGTATGGAGATAAGATAAGACATTAAAACCATTAATTTAGGTTGTTTTGAGATTCAATACTACTCTTACGCACTTTTCATTCATTTGAGGGGTTAAAGTGTTACTCACACACTTTTTGAAAACTTTTTTGGTTGGTTGAGAATCAAAGTGAGCATAGGATCTTCCTAGGATTGTTACTAGACTTCAAGTGACATTTAAGCATTTGTTTTGCTGTTTCAAGTGTTAAAGTGTTGCTTTGAAACTTTTTAGAAACTTTTTACATTGGTTTTAAGAGCTTTATATCGATACTATCATCACTGCTTTATATTCTAAGTGGTTTGATCATGTTGTGGTTGCCTAATGTGTTGGTACTTTAAATAGCTAGGTTGTTGGATGGATAAGGGATAGGTCCTGTTGTCACTCTTGTTCCTGTTTATATTTCAGAAACTACCGCATCAGAAATAAGAGGCTTCAGGCCAAAAAGGTTCTCCAGAGACTCCGTGACATAAAGGATGTTTCAGGTTCATACTTTATTCTTTATTTAATTTCAGTTATGATTTTCTATGGTCTTTTAGTTGTGTGCCTTCTAATAGTAACGATGAGATTGATGCAGTCAATGATAGATTTTGCCATAATTATCTTAACCTTTAGCGTTTTAATTTGACTTTGTTTTTACTCTGGTCATGTGATTCTAGTTTGGTATTCGATTGAGTTGAAGAATTGGGATTGATCTAGTTTATTTTTTTCTTTAGATAGTTTACTTTTGATCCAATATTGGGCGGTTGAATTCAAATAGAAAGTGTGTAATTCAAAAACACTGTACGTGTTGCATAGAACAGTAACACACAACAAATTCAATTTATTTTAGTGCAATTGATTATCAACATACTGGCGATTAATATTGAAACCTTAGAGTTTCTTGTTGTTTAGGATACTAGTCGAGTTATCCATGGAGTGGATTGTTTGTTGCTTGTTTTGAATCCTGACCTAACGCTATGATTTTGTTTTTGTTTATCATTTATATGCTTTGTCATTGGAGGGATTGATGGTGAACACTAATAGAATCCTTAAATTGTGGATGTAGTTGAAATTTCTCCAAAGAAAAATCCAAAGCTAGAGAATGGAGCTTCGACTTGAATCCATCATGATGAAGGAAAAGAATCATACCAAAAGTTTTGAAATTTACAACTACTAATTCAAAGAAAGCTGCAACTAGTACCATAAAGAATTTTCTTTTCACTTTTTACTTCGTTAGGTATACAAAATTTTGGTGTTATTCTATCAATCACTTGTGATAATAGGTTGGAACATACATGGGTATTGCTAAGTAAGCTCATTAAATCGACTTTGTTTTTTAGTTTTTTAGGTATGCTTATATTGTCTAGGTCATTAGTTACATGTGAAGTTGCTTTTCTAATTTTGTCTAGATCATGATGTTTCTTTTCAAACTTTTATTAGGCGATTGATATTGGGACAAACGACTTGTGA

mRNA sequence

ATGTCAGTTATGGTGCCTGATGTGGAGACAAGTAAGGATAGAATGGTAGAGCTAAAAAAGAAGGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACACATGTCTTCTCCCATCTGATGTGATAATAAATGAAATACAGTCAAAGATAAATAGCTCGGAGAATAAATTGGTTGGCGTAAGAAATATGAAAGTTGTAGGTAGCGAGGGTTGGACCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAAAACTATGATTGTGAAATTATTTTTTCTTGTGCACAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCATCGAAGTCCATTAGAACGTATAAAGATCATCCACTAGTTAGAGTCATTTTTCAATTGTACAGTGATGCTACAAAAAACTACCGCATCAGAAATAAGAGGCTTCAGGCCAAAAAGGTTCTCCAGAGACTCCGTGACATAAAGGATGTTTCAGATAGTTTACTTTTGATCCAATATTGGGCGGCGATTGATATTGGGACAAACGACTTGTGA

Coding sequence (CDS)

ATGTCAGTTATGGTGCCTGATGTGGAGACAAGTAAGGATAGAATGGTAGAGCTAAAAAAGAAGGTTCGAATGTTGGGTTCAGGTAGACCTTTCTTGGTTGAGATACAGAACACATGTCTTCTCCCATCTGATGTGATAATAAATGAAATACAGTCAAAGATAAATAGCTCGGAGAATAAATTGGTTGGCGTAAGAAATATGAAAGTTGTAGGTAGCGAGGGTTGGACCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAAAACTATGATTGTGAAATTATTTTTTCTTGTGCACAAAATTTTGCAAAGAACTCCAATAAGAGTGCTTCATCATCGAAGTCCATTAGAACGTATAAAGATCATCCACTAGTTAGAGTCATTTTTCAATTGTACAGTGATGCTACAAAAAACTACCGCATCAGAAATAAGAGGCTTCAGGCCAAAAAGGTTCTCCAGAGACTCCGTGACATAAAGGATGTTTCAGATAGTTTACTTTTGATCCAATATTGGGCGGCGATTGATATTGGGACAAACGACTTGTGA

Protein sequence

MSVMVPDVETSKDRMVELKKKVRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEGEAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPLVRVIFQLYSDATKNYRIRNKRLQAKKVLQRLRDIKDVSDSLLLIQYWAAIDIGTNDL
Homology
[Close]
BLAST of MELO3C032646 vs. NCBI nr
Match: XP_038897427.1 (tRNA pseudouridine synthase Pus10 [Benincasa hispida])

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-23
Identity = 64/101 (63.37%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINSSENKLVGVRN+KVVGSEGW LVQEG
Sbjct: 347 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLVGVRNLKVVGSEGWALVQEG 406

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++    +   S SS K ++  +  P+
Sbjct: 407 EAEKQKQYAALVWT-SRPLEDDDLLSISSLKDLKILQRTPI 446

[Close]
BLAST of MELO3C032646 vs. NCBI nr
Match: XP_011654255.1 (putative tRNA pseudouridine synthase Pus10 [Cucumis sativus] >KGN55479.1 hypothetical protein Csa_012687 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-22
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINSSENKL+GVRN+KVVGSEGW LVQEG
Sbjct: 339 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEG 398

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++        S SS K ++  +  P+
Sbjct: 399 EAEKQKQYAALVWT-SRPLEDADLLSISSLKDLKILQRTPI 438

[Close]
BLAST of MELO3C032646 vs. NCBI nr
Match: XP_008452922.1 (PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-21
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINS E KLVGVRN+KVVGSEGW LVQEG
Sbjct: 341 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEG 400

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++    +   S SS K ++  +  P+
Sbjct: 401 EAEKQKQYAALVWT-SRPLEDDDFLSISSLKDLKILQRTPI 440

[Close]
BLAST of MELO3C032646 vs. NCBI nr
Match: TYK19969.1 (putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-21
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINS E KLVGVRN+KVVGSEGW LVQEG
Sbjct: 355 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEG 414

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++    +   S SS K ++  +  P+
Sbjct: 415 EAEKQKQYAALVWT-SRPLEDDDFLSISSLKDLKILQRTPI 454

[Close]
BLAST of MELO3C032646 vs. NCBI nr
Match: KAA0064623.1 (putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-21
Identity = 71/152 (46.71%), Postives = 92/152 (60.53%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINS E KLVGVRN+KVVGSEGW LVQEG
Sbjct: 341 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEG 400

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPLVRVIFQLYSDATKNYRIRN 141
           EAEKQ     ++++ ++    +   S SS K ++  +  P+  +  +   +  K      
Sbjct: 401 EAEKQKQYAALVWT-SRPLEDDDFLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWLE 460

Query: 142 KRLQAKKVLQRLRDIKDVSDSLLLIQYWAAID 174
                   LQ       V+D++LL  Y   I+
Sbjct: 461 SFFNCTVKLQSTHASTKVTDNVLLFHYRMKIE 491

[Close]
BLAST of MELO3C032646 vs. ExPASy TrEMBL
Match: A0A0A0L378 (tRNA pseudouridine(55) synthase OS=Cucumis sativus OX=3659 GN=Csa_4G653400 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-22
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINSSENKL+GVRN+KVVGSEGW LVQEG
Sbjct: 339 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSSENKLIGVRNLKVVGSEGWALVQEG 398

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++        S SS K ++  +  P+
Sbjct: 399 EAEKQKQYAALVWT-SRPLEDADLLSISSLKDLKILQRTPI 438

[Close]
BLAST of MELO3C032646 vs. ExPASy TrEMBL
Match: A0A5D3D906 (tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00830 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.5e-22
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINS E KLVGVRN+KVVGSEGW LVQEG
Sbjct: 355 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEG 414

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++    +   S SS K ++  +  P+
Sbjct: 415 EAEKQKQYAALVWT-SRPLEDDDFLSISSLKDLKILQRTPI 454

[Close]
BLAST of MELO3C032646 vs. ExPASy TrEMBL
Match: A0A1S3BUF4 (tRNA pseudouridine(55) synthase OS=Cucumis melo OX=3656 GN=LOC103493791 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.5e-22
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINS E KLVGVRN+KVVGSEGW LVQEG
Sbjct: 341 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEG 400

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPL 123
           EAEKQ     ++++ ++    +   S SS K ++  +  P+
Sbjct: 401 EAEKQKQYAALVWT-SRPLEDDDFLSISSLKDLKILQRTPI 440

[Close]
BLAST of MELO3C032646 vs. ExPASy TrEMBL
Match: A0A5A7V921 (tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003460 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 71/152 (46.71%), Postives = 92/152 (60.53%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEIQSKINS E KLVGVRN+KVVGSEGW LVQEG
Sbjct: 341 VRMLGSGRPFLVEIQNARLLPSEMIINEIQSKINSPETKLVGVRNLKVVGSEGWALVQEG 400

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPLVRVIFQLYSDATKNYRIRN 141
           EAEKQ     ++++ ++    +   S SS K ++  +  P+  +  +   +  K      
Sbjct: 401 EAEKQKQYAALVWT-SRPLEDDDFLSISSLKDLKILQRTPIRVLHRRSPLEREKIIHWLE 460

Query: 142 KRLQAKKVLQRLRDIKDVSDSLLLIQYWAAID 174
                   LQ       V+D++LL  Y   I+
Sbjct: 461 SFFNCTVKLQSTHASTKVTDNVLLFHYRMKIE 491

[Close]
BLAST of MELO3C032646 vs. ExPASy TrEMBL
Match: A0A6J1FB31 (tRNA pseudouridine(55) synthase OS=Cucurbita moschata OX=3662 GN=LOC111443704 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFLVEIQN  LLPS++IINEI+SKIN S+NKL+GVRN+KVVGSEGW  VQEG
Sbjct: 353 VRMLGSGRPFLVEIQNARLLPSEMIINEIESKINGSKNKLIGVRNLKVVGSEGWAFVQEG 412

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPLVRVIFQLYSDATKNYRIRN 141
           EAEKQ     ++++ ++    +   S SS K ++  +  P +RV+             R 
Sbjct: 413 EAEKQKQYAALVWT-SRPLEDDDLLSISSLKDLKILQRTP-IRVLH------------RR 472

Query: 142 KRLQAKKVLQRLRDIKDVSDS 163
             L+ +K++  +R I+ V++S
Sbjct: 473 SPLEREKIIHWMR-IEKVAES 478

[Close]
BLAST of MELO3C032646 vs. TAIR 10
Match: AT1G20410.1 (Pseudouridine synthase family protein )

HSP 1 Score: 88.2 bits (217), Expect = 7.3e-18
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 0 

Query: 22  VRMLGSGRPFLVEIQNTCLLPSDVIINEIQSKINSSENKLVGVRNMKVVGSEGWTLVQEG 81
           VRMLGSGRPFL+E+QN+  LPS+  + E++ KIN SE KLVGV+++K +GS+ W +++EG
Sbjct: 325 VRMLGSGRPFLIEVQNSRQLPSEQSLKEVEEKINKSEKKLVGVKDLKCIGSQCWAMMREG 384

Query: 82  EAEKQNYDCEIIFSCAQNFAKNSNKSASSSKSIRTYKDHPLVRVI 127
           EAEKQ     +++       K+ N S S  K ++  +  P VRV+
Sbjct: 385 EAEKQKQYVALVWISRPLEEKDFN-SISCLKELKILQKTP-VRVL 427

The following BLAST results are available for this feature:
BLAST of MELO3C032646 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897427.17.1e-2363.37tRNA pseudouridine synthase Pus10 [Benincasa hispida][more]
XP_011654255.12.1e-2262.38putative tRNA pseudouridine synthase Pus10 [Cucumis sativus] >KGN55479.1 hypothe... [more]
XP_008452922.11.3e-2161.39PREDICTED: putative tRNA pseudouridine synthase Pus10 [Cucumis melo][more]
TYK19969.11.3e-2161.39putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa][more]
KAA0064623.13.0e-2146.71putative tRNA pseudouridine synthase Pus10 [Cucumis melo var. makuwa][more]
BLAST of MELO3C032646 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032646 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3781.0e-2262.38tRNA pseudouridine(55) synthase OS=Cucumis sativus OX=3659 GN=Csa_4G653400 PE=3 ... [more]
A0A5D3D9066.5e-2261.39tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3BUF46.5e-2261.39tRNA pseudouridine(55) synthase OS=Cucumis melo OX=3656 GN=LOC103493791 PE=3 SV=... [more]
A0A5A7V9211.4e-2146.71tRNA pseudouridine(55) synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A6J1FB314.2e-2148.23tRNA pseudouridine(55) synthase OS=Cucurbita moschata OX=3662 GN=LOC111443704 PE... [more]
BLAST of MELO3C032646 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20410.17.3e-1845.71Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.2510coord: 19..86
e-value: 3.4E-10
score: 42.1
NoneNo IPR availablePANTHERPTHR21568:SF1BNAC07G15400D PROTEINcoord: 21..128
IPR039894tRNA pseudouridine synthase Pus10-likePANTHERPTHR21568UNCHARACTERIZEDcoord: 21..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032646.1MELO3C032646.1mRNA