MELO3C032521 (gene) Melon (DHL92) v4

Overview
NameMELO3C032521
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCell division protein ftsH
Locationchr12: 15978975 .. 15979336 (-)
RNA-Seq ExpressionMELO3C032521
SyntenyMELO3C032521
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGTAGAAGCGAAAGATGCCTAGGATTGCAATTGAAAAATATTAAATCAAACAAGGATGATCCTATTGTGATCAAGGATAATACAGAGGTATATTTCTTACTTTCTGAATTTGAATTTGAAATGGTAGAAATAGTTAAAAATATATAATATGTATATATATGGTAGGAGGAAGTAAGATATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCTAGATGATGATGAACAAGAGTTAAGAGGACCTACAGATACACTAATTGTTGTGTACCAGAATCAGAAGTTTGTGAAAACAAATGTGGTGTTTGAAACACCGAAAGCAAAAATGCCAAAACACAACAAAGAAAAACA

mRNA sequence

ATGGTTCGTAGAAGCGAAAGATGCCTAGGATTGCAATTGAAAAATATTAAATCAAACAAGGATGATCCTATTGTGATCAAGGATAATACAGAGGAGGAAGTAAGATATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCTAGATGATGATGAACAAGAGTTAAGAGGACCTACAGATACACTAATTGTTGTGTACCAGAATCAGAAGTTTGTGAAAACAAATGTGGTGTTTGAAACACCGAAAGCAAAAATGCCAAAACACAACAAAGAAAAACA

Coding sequence (CDS)

ATGGTTCGTAGAAGCGAAAGATGCCTAGGATTGCAATTGAAAAATATTAAATCAAACAAGGATGATCCTATTGTGATCAAGGATAATACAGAGGAGGAAGTAAGATATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCTAGATGATGATGAACAAGAGTTAAGAGGACCTACAGATACACTAATTGTTGTGTACCAGAATCAGAAGTTTGTGAAAACAAATGTGGTGTTTGAAACACCGAAAGCAAAAATGCCAAAACACAACAAAGAAAAA

Protein sequence

MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGPTDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK
Homology
BLAST of MELO3C032521 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.2e-43
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60
          MVRRSERCLGLQLK IKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 95
          TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 94

BLAST of MELO3C032521 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 0

Query: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60
          MVRRSERCLG +LK IKS+KD+ I+I+DN EE++R EEP+ Y+P+Q IY  DDE+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 95
          T T IVVY ++KF++T++VF+TP+AKMPK  + K
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKMPKKKEGK 94

BLAST of MELO3C032521 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60
          MVR+S RCLG ++K++KSNKDDPI+I D              E   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNK 93
          T T I++Y+ +K+VK +VVFETPK KM  H++
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPKTKMAMHDR 79

BLAST of MELO3C032521 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 28 DNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGPTDTLIVVYQNQKFVKTNVVFETPKAKM 87
          D+ E+E RYEE I YEPLQ +Y +D E ELRGPT T IV+Y+ +K+VK +VVFETP+ KM
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 62

Query: 88 PKHNK 93
          P H++
Sbjct: 63 PTHDR 67

BLAST of MELO3C032521 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.6e-12
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 29  NTEEEVRYEEPIQYEPLQTIYLDDDEQELRGPTDTLIVVYQNQKFVKTNVVFETPKAKMP 88
           N  +E RYEE I YEPLQ +Y +D E ELRGPT T IV+Y+ +K+VK +VVFETP+ KMP
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMP 201

Query: 89  KHNK 93
            H++
Sbjct: 202 THDR 205

BLAST of MELO3C032521 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60
          MVRRSERCLGLQLK IKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 95
          TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 94

BLAST of MELO3C032521 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 0

Query: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60
          MVRRSERCLG +LK IKS+KD+ I+I+DN EE++R EEP+ Y+P+Q IY  DDE+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKEK 95
          T T IVVY ++KF++T++VF+TP+AKMPK  + K
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTPEAKMPKKKEGK 94

BLAST of MELO3C032521 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-15
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 1  MVRRSERCLGLQLKNIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60
          MVR+S RCLG ++K++KSNKDDPI+I D              E   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TDTLIVVYQNQKFVKTNVVFETPKAKMPKHNK 93
          T T I++Y+ +K+VK +VVFETPK KM  H++
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETPKTKMAMHDR 79

BLAST of MELO3C032521 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.4e-13
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0

Query: 28 DNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGPTDTLIVVYQNQKFVKTNVVFETPKAKM 87
          D+ E+E RYEE I YEPLQ +Y +D E ELRGPT T IV+Y+ +K+VK +VVFETP+ KM
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 62

Query: 88 PKHNK 93
          P H++
Sbjct: 63 PTHDR 67

BLAST of MELO3C032521 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 29  NTEEEVRYEEPIQYEPLQTIYLDDDEQELRGPTDTLIVVYQNQKFVKTNVVFETPKAKMP 88
           N  +E RYEE I YEPLQ +Y +D E ELRGPT T IV+Y+ +K+VK +VVFETP+ KMP
Sbjct: 142 NRADEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKMP 201

Query: 89  KHNK 93
            H++
Sbjct: 202 THDR 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0043162.14.2e-4398.94uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.14.4e-2461.70protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0066916.11.8e-1451.09Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.11.3e-1260.00Cell division protein ftsH [Cucumis melo var. makuwa][more]
TYK30853.16.6e-1259.38retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7TIM32.0e-4398.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X12.1e-2461.70Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7VKG59.0e-1551.09Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SWP56.4e-1360.00Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3E4063.2e-1259.38Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032521.1MELO3C032521.1mRNA