MELO3C032515.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032515.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionArmadillo-like helical
Locationchr07: 15895967 .. 15896245 (-)
RNA-Seq ExpressionMELO3C032515.jh1
SyntenyMELO3C032515.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAAAAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTTTAGTTTCACTAAGAGATGGAAGAATAATAAGCAACATGGAAGCAATACTACAGCCATAACAATATGCACTGCAAAAACAAATGTCTAAATTCAAATGGACAAAAATGTACATAAAGAAAGAATAATAA

mRNA sequence

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAAAAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTTTAGTTTCACTAAGAGATGGAAGAATAATAAGCAACATGGAAGCAATACTACAGCCATAACAATATGCACTGCAAAAACAAATGTCTAAATTCAAATGGACAAAAATGTACATAAAGAAAGAATAATAA

Coding sequence (CDS)

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAAAAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTTTAGTTTCACTAAGAGATGGAAGAATAATAAGCAACATGGAAGCAATACTACAGCCATAA

Protein sequence

MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLFLVSLRDGRIISNMEAILQP
Homology
BLAST of MELO3C032515.jh1 vs. NCBI nr
Match: TYK05541.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 3.22e-24
Identity = 49/53 (92.45%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 1  MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLFLVS 53
          MKGLAKESLMD IMFVNGRMKMDEGANKRIKILYHA RMISKQMEATWLF  S
Sbjct: 1  MKGLAKESLMDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATS 53

BLAST of MELO3C032515.jh1 vs. NCBI nr
Match: KAA0060939.1 (Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.27e-20
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 497 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 546

BLAST of MELO3C032515.jh1 vs. NCBI nr
Match: XP_004143023.2 (uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical protein Csa_018711 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.28e-20
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

BLAST of MELO3C032515.jh1 vs. NCBI nr
Match: XP_008444580.1 (PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.28e-20
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

BLAST of MELO3C032515.jh1 vs. NCBI nr
Match: XP_038886260.1 (uncharacterized protein LOC120076487 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 2.90e-19
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKM+E ANKRIKI YHA RMISKQMEATWLF
Sbjct: 515 MKGLAKESLMDCIMFVNGGMKMEEAANKRIKIPYHAARMISKQMEATWLF 564

BLAST of MELO3C032515.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C0T4 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00490 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.56e-24
Identity = 49/53 (92.45%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 1  MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLFLVS 53
          MKGLAKESLMD IMFVNGRMKMDEGANKRIKILYHA RMISKQMEATWLF  S
Sbjct: 1  MKGLAKESLMDFIMFVNGRMKMDEGANKRIKILYHAARMISKQMEATWLFATS 53

BLAST of MELO3C032515.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V5F7 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00720 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.13e-21
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 497 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 546

BLAST of MELO3C032515.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LL28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.19e-21
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

BLAST of MELO3C032515.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BA59 (uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.19e-21
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 50
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

BLAST of MELO3C032515.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HE90 (uncharacterized protein LOC111462748 OS=Cucurbita moschata OX=3662 GN=LOC111462748 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.72e-16
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEG----ANKRIKILYHAKRMISKQMEATWLFLVSLRD 60
           MKGLAKESLMDCIMFVNG MKM+ G     +KRIKI YHA RMISKQMEA WLF    R 
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMEAGNGTGESKRIKIPYHAARMISKQMEAAWLF-APARL 573

Query: 61  GRIISNME 64
            ++ S+ E
Sbjct: 574 KKLASSQE 580

BLAST of MELO3C032515.jh1 vs. TAIR 10
Match: AT5G43120.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           +KGL++ESLMDCIMFVNGR         R  I Y+A +MISKQMEATWLF
Sbjct: 512 IKGLSRESLMDCIMFVNGRC-------FRGNIPYYAAQMISKQMEATWLF 554

BLAST of MELO3C032515.jh1 vs. TAIR 10
Match: AT5G10200.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.1e-05
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEG--ANKRIKILYHAKRMISKQMEATWLF 51
           M GLAKESL+D I+F+N   + ++   + ++ K+  +A+R++ KQM A WLF
Sbjct: 486 MLGLAKESLLDAILFINECSQSNDPDLSMRQNKVPDYAERLVKKQMRAAWLF 537

BLAST of MELO3C032515.jh1 vs. TAIR 10
Match: AT3G50030.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein )

HSP 1 Score: 42.4 bits (98), Expect = 1.8e-04
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           +KG  +ESLMDC+ FV+ R+K     +   +I Y+A +MI KQM AT +F
Sbjct: 448 LKGSTRESLMDCLAFVDHRVK----HSNTQRIPYYAAQMIRKQMSATCIF 493

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05541.13.22e-2492.45Armadillo-like helical [Cucumis melo var. makuwa][more]
KAA0060939.11.27e-2094.00Armadillo-like helical [Cucumis melo var. makuwa][more]
XP_004143023.21.28e-2094.00uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical ... [more]
XP_008444580.11.28e-2094.00PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo][more]
XP_038886260.12.90e-1990.00uncharacterized protein LOC120076487 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0T41.56e-2492.45Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A5A7V5F76.13e-2194.00Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5... [more]
A0A0A0LL286.19e-2194.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1[more]
A0A1S3BA596.19e-2194.00uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=... [more]
A0A6J1HE908.72e-1666.18uncharacterized protein LOC111462748 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
Match NameE-valueIdentityDescription
AT5G43120.11.8e-0964.00ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [more]
AT5G10200.16.1e-0542.31ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [more]
AT3G50030.11.8e-0446.00ARM-repeat/Tetratricopeptide repeat (TPR)-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46578:SF1ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEINcoord: 1..53
NoneNo IPR availablePANTHERPTHR46578ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEINcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032515.jh1.t1MELO3C032515.jh1.t1mRNA