MELO3C032490.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032490.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionActivating signal cointegrator 1 complex subunit 1
Locationchr07: 13859113 .. 13859766 (+)
RNA-Seq ExpressionMELO3C032490.jh1
SyntenyMELO3C032490.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGTAAAACGGAATTTAAGAGTGTTGCTGACCAGAAATAAAAGCGCAAAACAATCAGCCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTTTGAGGGTAGGTTGAATTTATATTGCAAAAGGATATAAGTATTGGCTGTATACTTTGGGACATCCAACAAGCTCCTAAATTTACCAAGTATAAGTTCTTTTAATGTTAGCAAAAGGCATGGGAATTTGTTGTTCATCTTAAGCATAATAGTGAATAGCCCTCAACTGGATTAAAAATTTTATGATGATAGGTGTTACACGCTAAACAGTTGAATTAATCATGTACCTAGGGGATTTATTTAGTGGGAGATAATTGTTCTTGATGTAGATTTGTCGGTTAAGGATGATAGAGTTGGGTCAGAGGATGGAAGTCAAGTTCAAGAAATGGATTGCAGAATGCATTCCAGTATTGCTAGTGCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTCACTGAGCTAAGTGTAAATGTTAGTGGAGACACAAACTTGGAGGGTCAATCTGTGCCTTTTGGTGAGAAGTTTTCAGTGAAACTGAATGTAAGTGAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATTGAGACTTCCTGTCAATTGATTGA

mRNA sequence

ATGACTGGTAAAACGGAATTTAAGAGTGTTGCTGACCAGAAATAAAAGCGCAAAACAATCAGCCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTTTGAGGATTTGTCGGTTAAGGATGATAGAGTTGGGTCAGAGGATGGAAGTCAAGTTCAAGAAATGGATTGCAGAATGCATTCCAGTATTGCTAGTGCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTCACTGAGCTAAGTGTAAATGTTAGTGGAGACACAAACTTGGAGGGTCAATCTGTGCCTTTTGGTGAGAAGTTTTCAGTGAAACTGAATGTAAGTGAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATTGAGACTTCCTGTCAATTGATTGA

Coding sequence (CDS)

ATGGATTGCAGAATGCATTCCAGTATTGCTAGTGCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTCACTGAGCTAAGTGTAAATGTTAGTGGAGACACAAACTTGGAGGGTCAATCTGTGCCTTTTGGTGAGAAGTTTTCAGTGAAACTGAATGTAAGTGAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATTGA

Protein sequence

MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHIRLNELLSNIVN
Homology
BLAST of MELO3C032490.jh1 vs. NCBI nr
Match: KAA0033771.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK22364.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 4.52e-28
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MDC MHSSIASAQPVEVVEEINVVTELSVNV GDTNLEGQSVP GEKFSVKLNVSEHI
Sbjct: 55  MDCIMHSSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 112

BLAST of MELO3C032490.jh1 vs. NCBI nr
Match: KAA0053415.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK15894.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 1.31e-27
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1  MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLN 53
          MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLN
Sbjct: 23 MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLN 75

BLAST of MELO3C032490.jh1 vs. NCBI nr
Match: XP_008462176.1 (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo])

HSP 1 Score: 100 bits (249), Expect = 9.86e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MDCRMHSS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVP GEKFSVKLNV   +
Sbjct: 105 MDCRMHSSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 162

BLAST of MELO3C032490.jh1 vs. NCBI nr
Match: KAA0059318.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK04009.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 1.09e-22
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MDCRMHSS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVP GEKFSVKLNV   +
Sbjct: 129 MDCRMHSSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 186

BLAST of MELO3C032490.jh1 vs. NCBI nr
Match: XP_031745175.1 (activating signal cointegrator 1 complex subunit 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 2.55e-16
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MD RMH+S  SAQPVEV EEINVVTELSVN+ GDTNLEGQSV  GEKFSVKL+V   +
Sbjct: 58  MDVRMHTS-TSAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 114

BLAST of MELO3C032490.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DFJ4 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00870 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 2.19e-28
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MDC MHSSIASAQPVEVVEEINVVTELSVNV GDTNLEGQSVP GEKFSVKLNVSEHI
Sbjct: 55  MDCIMHSSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 112

BLAST of MELO3C032490.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UI82 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00760 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 6.35e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1  MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLN 53
          MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLN
Sbjct: 23 MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLN 75

BLAST of MELO3C032490.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CGC2 (activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103500600 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 4.77e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MDCRMHSS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVP GEKFSVKLNV   +
Sbjct: 105 MDCRMHSSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 162

BLAST of MELO3C032490.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C0W5 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002070 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 5.27e-23
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MDCRMHSS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVP GEKFSVKLNV   +
Sbjct: 129 MDCRMHSSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 186

BLAST of MELO3C032490.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K963 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.33e-16
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 1   MDCRMHSSIASAQPVEVVEEINVVTELSVNVSGDTNLEGQSVPFGEKFSVKLNVSEHI 58
           MD RMH+S  SAQPVEV EEINVVTELSVN+ GDTNLEGQSV  GEKFSVKL+V   +
Sbjct: 151 MDVRMHTS-TSAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033771.14.52e-2894.83activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T... [more]
KAA0053415.11.31e-27100.00activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T... [more]
XP_008462176.19.86e-2387.93PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo][more]
KAA0059318.11.09e-2287.93activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T... [more]
XP_031745175.12.55e-1675.86activating signal cointegrator 1 complex subunit 1 isoform X3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFJ42.19e-2894.83Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O... [more]
A0A5A7UI826.35e-28100.00Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O... [more]
A0A1S3CGC24.77e-2387.93activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5D3C0W55.27e-2387.93Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O... [more]
A0A0A0K9631.33e-1675.86KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032490.jh1.t1MELO3C032490.jh1.t1mRNA