MELO3C032489 (gene) Melon (DHL92) v4

Overview
NameMELO3C032489
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr07: 4700532 .. 4702187 (-)
RNA-Seq ExpressionMELO3C032489
SyntenyMELO3C032489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCGTGTGACTTCGTGGAGATTTCCATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTTCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAATGTTGGGCGGGCCCCACTACGATAAAGACGATGGGAGTGCTGGGCGTGCCCTACACCACGTAGATCGATCATGTTAGTTAAAACGTTTGATGTATTTGTTATGCCTTGCTAGATTTTTTATGACGAACTTGGAAGATATTTTAGAAAGCCTTATTTATTACACGTTTATGTTAAATGCTTTGATTGAGCATATTTATACGTCTAAAGGTTTATCACATGTTTTGACGTTCATATTTAGAGTTTTAAATTTAGTCACTCACTGGGCCTCGTAGCTCATTCTTTTCAAAATGTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTACCTAATACACTGCCAACATCTGCTGAAAGTTCCAGATCAAACTCCAGTACGTGGTTGGAGTTGTAATTTGAGTTTGTTCATGTTGAAATGTTTTGCAAGGTTTGTATAATATCGTCCTAGAGATCGTGGTCGTAAAACTCTAGTTGTATAGATTTTGGTCGTGATATTTATATCAGGTTATTTTACAAACCAAGTGATGTCAGGACTGCATCTCGTGTATGTTGGGAAGGTTTTCGTGGATTCCGTTGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGGTATGTTTATCAGGTTTAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGACAGCAGGTGGTCCGGGAGGGGGGTGTGACATCAAGTGTAGGCTTTCTCTTTCTGACTTGGTTGATAGACTTGAATATTTTTAGTACGTTTGGACATAATATCTTATAAAGAAGATAAAGGACTCAAATTCTTCTCAAAAATCATATTACATTGAGCCTTGTTCATAGCACAAGTCCAAGAAAAGAAAGAAAAGGATGAAAGGTAAAGGAAGATAGGCTTTCTTCTAATAGTAGAATAAGAGGATTTTTCAGACAAGATTATTTAGAAGAAAGTTCAGTCGGAAAGCCTACCATAACTAGTATATATTCCATAAATCAGTCAGGATATAAGGGCTTTTTCAATGACTTACTCAATCAACTCGACAGGAATCAAGGTCAGACTCCTCTACACGGTGCTTAGCCATGAGACTAAGAAGGAGAGGTGGAGGAAGCTCTCTCATGCCCCTGACTACTCTATTGGCTTTTCACTCAATTTCCTTTCATTCTAATTAAGCTACCACGGACTAGTAGCTGGCTCATCAAGATTATTCGTTGAGTAAGCTATCCTAACATTGTGCAGTTTCATTCTCAATTGAAGTTGAAATCTCGGACTCAAGGGAAGAAGTCTTAGTGCCTCCCAGCAACTAGGACTAACGCTAGAACTTAGAACAGAAAGTATCACTACAAGAAAATTGAGGTTTCCCGACGCACAAAGGCGTCAAGAGATATGTGAAAAAGTGTCGGAAAATTCTTTTCTAACGCATAAATCTACGTCGGGGTCGAAGTCAAGGAAAATAAGTCAGGAGAGGATCTCCCGATGCACAAAATAG

mRNA sequence

ATGTTTTCGTGTGACTTCGTGGAGATTTCCATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTACCTAATACACTGCCAACATCTGCTGAAAGTTCCAGATCAAACTCCAGTACGTGGTTGGAGTTGTTATTTTACAAACCAAGTGATGTCAGGACTGCATCTCGTGTATGTTGGGAAGGTTTTCGTGGATTCCGTTGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGTAGGGTCAACAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGACAGCAGGTGGTCCGGGAGGGGGTCAGGATATAAGGGCTTTTTCAATGACTTACTCAATCAACTCGACAGGAATCAAGGTCAGACTCCTCTACACGGGAAGAAGTCTTAGTGCCTCCCAGCAACTAGGACTAACGCTAGAACTTAGAACAGAAAGTATCACTACAAGAAAATTGAGGTTTCCCGACGCACAAAGGCGTCAAGAGATATGTGAAAAAGTGTCGGAAAATTCTTTTCTAACGCATAAATCTACGTCGGGGTCGAAGTCAAGGAAAATAAGTCAGGAGAGGATCTCCCGATGCACAAAATAG

Coding sequence (CDS)

ATGTTTTCGTGTGACTTCGTGGAGATTTCCATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTACCTAATACACTGCCAACATCTGCTGAAAGTTCCAGATCAAACTCCAGTACGTGGTTGGAGTTGTTATTTTACAAACCAAGTGATGTCAGGACTGCATCTCGTGTATGTTGGGAAGGTTTTCGTGGATTCCGTTGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGTAGGGTCAACAGGGATCGTTAGAGGAGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGACAGCAGGTGGTCCGGGAGGGGGTCAGGATATAAGGGCTTTTTCAATGACTTACTCAATCAACTCGACAGGAATCAAGGTCAGACTCCTCTACACGGGAAGAAGTCTTAGTGCCTCCCAGCAACTAGGACTAACGCTAGAACTTAGAACAGAAAGTATCACTACAAGAAAATTGAGGTTTCCCGACGCACAAAGGCGTCAAGAGATATGTGAAAAAGTGTCGGAAAATTCTTTTCTAACGCATAAATCTACGTCGGGGTCGAAGTCAAGGAAAATAAGTCAGGAGAGGATCTCCCGATGCACAAAATAG

Protein sequence

MFSCDFVEISIDYMTEILSLRLYGTVCTQVEIELPVPNTLPTSAESSRSNSSTWLELLFYKPSDVRTASRVCWEGFRGFRCVVFHVEYSISKIVGSTGIVRGDDVCWLHAVFRAKTAGGPGGGQDIRAFSMTYSINSTGIKVRLLYTGRSLSASQQLGLTLELRTESITTRKLRFPDAQRRQEICEKVSENSFLTHKSTSGSKSRKISQERISRCTK
Homology
BLAST of MELO3C032489 vs. NCBI nr
Match: KAA0054353.1 (uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12390.1 uncharacterized protein E5676_scaffold302G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-34
Identity = 82/112 (73.21%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 30  VEIELPVPNTLPTSAESSRSNSSTWL---------ELLFYKPSDVRTASRVCWEGFRGFR 89
           VEIELPV +TL TSAESS SNSSTWL         E+LFYKPSDV T SRVCWEGFRGFR
Sbjct: 97  VEIELPVLDTLATSAESSGSNSSTWLKLYFESLHVEMLFYKPSDVMTTSRVCWEGFRGFR 156

Query: 90  CVVFHVEYSISKI---------VGSTGIVRGDDVCWLHAVFRAKTAGGPGGG 124
           CVVFHVEYSISKI         VGSTGIVRG+DV W H VFRAKTAGG GGG
Sbjct: 157 CVVFHVEYSISKIGMFIRFNVSVGSTGIVRGEDVRWFHVVFRAKTAGGSGGG 208

BLAST of MELO3C032489 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 6.6e-31
Identity = 85/141 (60.28%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 9    ISIDYMTEILSLRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSNS 68
            +SIDYMTEILSLRL GTVCTQ                 VEIELPVP+TLPTSAE   SNS
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNS 1340

Query: 69   STWLEL---------LFYKPSDVRTASRVCWEGFRGFRCVVFHVEYSISKIVGSTGIVRG 124
            STWLEL         LFYKPSDVR AS VCWE                    GS GIVRG
Sbjct: 1341 STWLELYLESVHVEMLFYKPSDVRAASYVCWE--------------------GSAGIVRG 1400

BLAST of MELO3C032489 vs. NCBI nr
Match: KAA0041121.1 (hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 5.6e-30
Identity = 78/111 (70.27%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 9   ISIDYMTEILSLRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSNS 68
           ISIDYMTEILSLRLYGTVCT                  VEIELPVP+ LPTSAESS SNS
Sbjct: 91  ISIDYMTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDRLPTSAESSASNS 150

Query: 69  STWLEL---------LFYKPSDVRTASRVCWEGFRGFRCVVFHVEYSISKI 94
           STWLEL         LFYKPSDVR  SRVCWEGFRGF CVVFHVEYSISKI
Sbjct: 151 STWLELYFESVHVEMLFYKPSDVRIVSRVCWEGFRGFLCVVFHVEYSISKI 201

BLAST of MELO3C032489 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-27
Identity = 87/191 (45.55%), Postives = 95/191 (49.74%), Query Frame = 0

Query: 5   DFVEISIDYMTEILSLRLYGTVCTQV---------------------------------- 64
           D +EISIDYMTEILSLRLYGTVC QV                                  
Sbjct: 167 DKIEISIDYMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVVSVGQTHYDKDDGVPGGP 226

Query: 65  -----------------------EIELPVPNTLPTSAESSRSNSSTWLEL---LFYKPSD 124
                                  EIEL VP+TLPTSAESS SNSSTWLE    LFYKPSD
Sbjct: 227 HYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSNSSTWLEFDFELFYKPSD 286

Query: 125 VRTASRVCWEGFRGFRCVVFHVEYSISKIVGSTGIVRGDDVCWLHAVFRAKTAGGPGGGQ 136
           VRTASR+CWE                   V S GIVR +DVCWLHAVFRAK AGG GGG 
Sbjct: 287 VRTASRICWE-------------------VRSAGIVRENDVCWLHAVFRAKIAGGSGGGV 338

BLAST of MELO3C032489 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-24
Identity = 73/134 (54.48%), Postives = 83/134 (61.94%), Query Frame = 0

Query: 30  VEIELPVPNTLPTSAESSRSNSSTWLEL---------LFYKPSDVRTASRVCWEGFRGFR 89
           VEIELP+P+TLPTSAESS SNSSTWLEL         LFYKPSD R AS VCWE      
Sbjct: 336 VEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDARAASYVCWE------ 395

Query: 90  CVVFHVEYSISKIVGSTGIVRGDDVCWLHAVFRAKTAGGPGGGQDIRAFSMTYSINSTGI 149
                         GS GIVRGDDVCWLHA+FRAKTAGGPGGG      + + S++ T  
Sbjct: 396 --------------GSAGIVRGDDVCWLHAIFRAKTAGGPGGG-----VTPSKSVSETPF 441

Query: 150 KVRLLYTGRSLSAS 155
           +   L+ GR  S+S
Sbjct: 456 E---LWRGRKPSSS 441

BLAST of MELO3C032489 vs. ExPASy TrEMBL
Match: A0A5A7UEC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001720 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 82/112 (73.21%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 30  VEIELPVPNTLPTSAESSRSNSSTWL---------ELLFYKPSDVRTASRVCWEGFRGFR 89
           VEIELPV +TL TSAESS SNSSTWL         E+LFYKPSDV T SRVCWEGFRGFR
Sbjct: 97  VEIELPVLDTLATSAESSGSNSSTWLKLYFESLHVEMLFYKPSDVMTTSRVCWEGFRGFR 156

Query: 90  CVVFHVEYSISKI---------VGSTGIVRGDDVCWLHAVFRAKTAGGPGGG 124
           CVVFHVEYSISKI         VGSTGIVRG+DV W H VFRAKTAGG GGG
Sbjct: 157 CVVFHVEYSISKIGMFIRFNVSVGSTGIVRGEDVRWFHVVFRAKTAGGSGGG 208

BLAST of MELO3C032489 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-31
Identity = 85/141 (60.28%), Postives = 87/141 (61.70%), Query Frame = 0

Query: 9    ISIDYMTEILSLRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSNS 68
            +SIDYMTEILSLRL GTVCTQ                 VEIELPVP+TLPTSAE   SNS
Sbjct: 1281 LSIDYMTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNS 1340

Query: 69   STWLEL---------LFYKPSDVRTASRVCWEGFRGFRCVVFHVEYSISKIVGSTGIVRG 124
            STWLEL         LFYKPSDVR AS VCWE                    GS GIVRG
Sbjct: 1341 STWLELYLESVHVEMLFYKPSDVRAASYVCWE--------------------GSAGIVRG 1400

BLAST of MELO3C032489 vs. ExPASy TrEMBL
Match: A0A5A7THH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00290 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-30
Identity = 78/111 (70.27%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 9   ISIDYMTEILSLRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSNS 68
           ISIDYMTEILSLRLYGTVCT                  VEIELPVP+ LPTSAESS SNS
Sbjct: 91  ISIDYMTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDRLPTSAESSASNS 150

Query: 69  STWLEL---------LFYKPSDVRTASRVCWEGFRGFRCVVFHVEYSISKI 94
           STWLEL         LFYKPSDVR  SRVCWEGFRGF CVVFHVEYSISKI
Sbjct: 151 STWLELYFESVHVEMLFYKPSDVRIVSRVCWEGFRGFLCVVFHVEYSISKI 201

BLAST of MELO3C032489 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.6e-28
Identity = 87/191 (45.55%), Postives = 95/191 (49.74%), Query Frame = 0

Query: 5   DFVEISIDYMTEILSLRLYGTVCTQV---------------------------------- 64
           D +EISIDYMTEILSLRLYGTVC QV                                  
Sbjct: 167 DKIEISIDYMTEILSLRLYGTVCPQVIFPLSTLSVLRDNDAVVSVGQTHYDKDDGVPGGP 226

Query: 65  -----------------------EIELPVPNTLPTSAESSRSNSSTWLEL---LFYKPSD 124
                                  EIEL VP+TLPTSAESS SNSSTWLE    LFYKPSD
Sbjct: 227 HYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSNSSTWLEFDFELFYKPSD 286

Query: 125 VRTASRVCWEGFRGFRCVVFHVEYSISKIVGSTGIVRGDDVCWLHAVFRAKTAGGPGGGQ 136
           VRTASR+CWE                   V S GIVR +DVCWLHAVFRAK AGG GGG 
Sbjct: 287 VRTASRICWE-------------------VRSAGIVRENDVCWLHAVFRAKIAGGSGGGV 338

BLAST of MELO3C032489 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.6e-25
Identity = 73/134 (54.48%), Postives = 83/134 (61.94%), Query Frame = 0

Query: 30  VEIELPVPNTLPTSAESSRSNSSTWLEL---------LFYKPSDVRTASRVCWEGFRGFR 89
           VEIELP+P+TLPTSAESS SNSSTWLEL         LFYKPSD R AS VCWE      
Sbjct: 336 VEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDARAASYVCWE------ 395

Query: 90  CVVFHVEYSISKIVGSTGIVRGDDVCWLHAVFRAKTAGGPGGGQDIRAFSMTYSINSTGI 149
                         GS GIVRGDDVCWLHA+FRAKTAGGPGGG      + + S++ T  
Sbjct: 396 --------------GSAGIVRGDDVCWLHAIFRAKTAGGPGGG-----VTPSKSVSETPF 441

Query: 150 KVRLLYTGRSLSAS 155
           +   L+ GR  S+S
Sbjct: 456 E---LWRGRKPSSS 441

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054353.14.9e-3473.21uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12... [more]
TYK08952.16.6e-3160.28DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0041121.15.6e-3070.27hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa][more]
TYK08801.11.2e-2745.55hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
TYK25935.11.6e-2454.48gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UEC12.3e-3473.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CCC73.2e-3160.28DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7THH52.7e-3070.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CAC65.6e-2845.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T9P77.6e-2554.48Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..217

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032489.1MELO3C032489.1mRNA