MELO3C032469.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032469.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Zinc finger BED domain-containing protein RICESLEEPER 1-like
Location	chr07: 3602028 .. 3602252 (-)
RNA-Seq Expression	MELO3C032469.jh1
Synteny	MELO3C032469.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAAAAGGCCTCTTTTGAGTAACGGTAGACTATTTGACGTATGCCCGGTTGCACATACCATGAATCCAATTGCTAAAGACGTGACAGAAGCGATGCAAGAGGTTAACAAAAAGATTCAAGGGAGTTTTAAATATATCAGAAGTTCACATGTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAATTGGGATCACCAGTCAGACGATATTGGTCTGA

mRNA sequence

ATGTCGAAGAAAAGGCCTCTTTTGAGTAACGGTAGACTATTTGACGTATGCCCGGTTGCACATACCATGAATCCAATTGCTAAAGACGTGACAGAAGCGATGCAAGAGGTTAACAAAAAGATTCAAGGGAGTTTTAAATATATCAGAAGTTCACATGTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAATTGGGATCACCAGTCAGACGATATTGGTCTGA

Coding sequence (CDS)

ATGTCGAAGAAAAGGCCTCTTTTGAGTAACGGTAGACTATTTGACGTATGCCCGGTTGCACATACCATGAATCCAATTGCTAAAGACGTGACAGAAGCGATGCAAGAGGTTAACAAAAAGATTCAAGGGAGTTTTAAATATATCAGAAGTTCACATGTCACTCAAGGGAGGTTCAATGAGATGGCTCATCAAATTGGGATCACCAGTCAGACGATATTGGTCTGA

Protein sequence

MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMAHQIGITSQTILV

Homology

[Close]

BLAST of MELO3C032469.jh1 vs. NCBI nr
Match: KAA0066716.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. makuwa] >TYK27864.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 1.07e-45
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
          MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE
Sbjct: 1  MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60

Query: 61 MAHQIGITSQTILV 74
          MAHQIGITSQTILV
Sbjct: 61 MAHQIGITSQTILV 74

[Close]

BLAST of MELO3C032469.jh1 vs. NCBI nr
Match: XP_038898440.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida] >XP_038898441.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida])

HSP 1 Score: 119 bits (298), Expect = 3.33e-29
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKK+ LLSNGRLFDVC  AHTMN IA+DV EAM+EVN+KI+GSFKYIRSS +TQ RFNE
Sbjct: 284 VSKKKSLLSNGRLFDVCSAAHTMNAIAEDVIEAMREVNQKIRGSFKYIRSSQITQRRFNE 343

Query: 61  MAHQIGITSQTILV 74
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. NCBI nr
Match: KAG6591773.1 (Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118 bits (296), Expect = 6.24e-29
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFDVC  AHTMN IA+DV EA++E+ +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDVCSAAHTMNAIAEDVIEALREITQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 74
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. NCBI nr
Match: XP_023536471.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita pepo subsp. pepo] >XP_023536472.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117 bits (293), Expect = 1.60e-28
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFDVC  AHTMN IA+DV EA++E  +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDVCSAAHTMNAIAEDVIEALRETTQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 74
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. NCBI nr
Match: XP_022976722.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima] >XP_022976723.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima])

HSP 1 Score: 117 bits (293), Expect = 1.60e-28
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFD+C  AHTMN IA+DV EA++E+ +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDLCSAAHTMNAIAEDVIEALREITQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 74
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 2   SKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEM 61
           +KK  ++  G+LF V   AH +N +A+DV  ++  V   I+ S K+I++S V + +F E+
Sbjct: 366 NKKDNIMIKGQLFVVRCYAHILNTVAQDVIASVHSVIYHIRESIKFIKASSVHEDKFAEI 425

Query: 62  AHQIGITSQTIL 74
           A Q+ I S   L
Sbjct: 426 ALQLEIPSAKTL 437

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 4   KRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMAH 63
           K P + +G+L     VA T   +AKDV E  ++V K I+ S K++++S   + RF E+  
Sbjct: 322 KNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKE 381

Query: 64  QIGITSQTIL 74
           Q+ + S+ +L
Sbjct: 382 QLQVPSEKVL 391

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-04
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S K  L+  G+LF V   AH +N +A+DV  ++  V   I+ S K+I++S   + +F E
Sbjct: 324 LSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSCEEKFAE 383

Query: 61  MAHQIGITSQTIL 74
           +A Q+ I S   L
Sbjct: 384 IALQLEIPSTKTL 396

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-04
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +S K  L+  G+LF V   AH +N +A+DV  ++  V   I+ S K+I++S   + +F E
Sbjct: 324 LSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSREEKFAE 383

Query: 61  MAHQIGITSQTIL 74
           +A Q+ I S   L
Sbjct: 384 IALQLEIPSTKTL 396

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DWH8 (Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00430 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 5.19e-46
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
          MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE
Sbjct: 1  MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60

Query: 61 MAHQIGITSQTILV 74
          MAHQIGITSQTILV
Sbjct: 61 MAHQIGITSQTILV 74

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IN11 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477023 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 7.74e-29
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFD+C  AHTMN IA+DV EA++E+ +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDLCSAAHTMNAIAEDVIEALREITQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 74
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FC74 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111442712 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.06e-28
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MSKKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNE 60
           +SKKRPLLSNGRLFDVC  AHTMN IA+DV E ++E+ +KI+ SFKYIRSS V QGRFNE
Sbjct: 284 ISKKRPLLSNGRLFDVCSAAHTMNAIAEDVIEVLREITQKIRASFKYIRSSQVIQGRFNE 343

Query: 61  MAHQIGITSQTILV 74
           MAHQ+GITSQ ILV
Sbjct: 344 MAHQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VEC8 (Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00500 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.44e-28
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   KKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMA 62
           KKR LLSNG LFDVC  AHT+N IAKDV EAM+EVN+KI+GSFKYIRSS VTQ RFNEMA
Sbjct: 284 KKRSLLSNGSLFDVCSAAHTINAIAKDVIEAMREVNQKIRGSFKYIRSSQVTQRRFNEMA 343

Query: 63  HQIGITSQTILV 74
           HQ+GITSQ ILV
Sbjct: 344 HQVGITSQKILV 355

[Close]

BLAST of MELO3C032469.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4C0 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=3656 GN=LOC107992032 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.45e-28
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   KKRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMA 62
           KKR LLSNG LFDVC  AHT+N IAKDV EAM+EVN+KI+GSFKYIRSS VTQ RFNEMA
Sbjct: 286 KKRSLLSNGSLFDVCSAAHTINAIAKDVIEAMREVNQKIRGSFKYIRSSQVTQRRFNEMA 345

Query: 63  HQIGITSQTILV 74
           HQ+GITSQ ILV
Sbjct: 346 HQVGITSQKILV 357

[Close]

BLAST of MELO3C032469.jh1 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 24/70 (34.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 4   KRPLLSNGRLFDVCPVAHTMNPIAKDVTEAMQEVNKKIQGSFKYIRSSHVTQGRFNEMAH 63
           K P + +G+L     VA T   +AKDV E  ++V K I+ S K++++S   + RF E+  
Sbjct: 322 KNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKE 381

Query: 64  QIGITSQTIL 74
           Q+ + S+ +L
Sbjct: 382 QLQVPSEKVL 391

The following BLAST results are available for this feature:

BLAST of MELO3C032469.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066716.1	1.07e-45	100.00	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo var. ...	[more]
XP_038898440.1	3.33e-29	78.38	zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida]...	[more]
KAG6591773.1	6.24e-29	77.03	Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argy...	[more]
XP_023536471.1	1.60e-28	77.03	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita pepo sub...	[more]
XP_022976722.1	1.60e-28	75.68	zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima] ...	[more]

BLAST of MELO3C032469.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q75HY5	1.4e-04	36.11	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]
Q9M2N5	3.2e-04	34.29	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]
B9FJG3	4.1e-04	35.62	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q6AVI0	4.1e-04	35.62	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]

BLAST of MELO3C032469.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWH8	5.19e-46	100.00	Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var...	[more]
A0A6J1IN11	7.74e-29	75.68	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita maxima...	[more]
A0A6J1FC74	1.06e-28	75.68	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita moscha...	[more]
A0A5A7VEC8	1.44e-28	80.56	Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var...	[more]
A0A1S4E4C0	1.45e-28	80.56	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=...	[more]

BLAST of MELO3C032469.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	2.2e-05	34.29	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23272:SF148	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE	coord: 2..73
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032469.jh1.t1	MELO3C032469.jh1.t1	mRNA