MELO3C032455.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032455.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	PMD domain-containing protein
Location	chr07: 10913988 .. 10915134 (-)
RNA-Seq Expression	MELO3C032455.jh1
Synteny	MELO3C032455.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTATGACAAGCCAACCACACGAAAACAAAAGATGACGTCGCGCTCCAAATCTACTCAGAACCCTGATGGTTCGAAGATCCAGGCTCTTGAATGGTCCTCTAGGAGAACATGTTATTTGCAGAAGTTGGAATCAGGAACTATCTGAAGGATGAAACGTATTTGGCTGCCTTCTTATCTTGCTGGTTATGCCTTTTCCTATTTTCACAGAAAGGATCATTTCTTCGTCCCGGAGTATTTATGGCTGCAAGCTTAATGGCCGCTGGCACTATTTATAGTTTTGCAGTTTCAATTTTGGCGAACGTATATCATGGGCTAGGTTTGATAACCAAAGCCTCCAATCCAATAAGATGCATGGACTTTCACTTTTTCATGCATTACATCCATGGCTAGTTAGCCCATTATTTTGGTACGCATTATCCACTTTCCACAAAAGTTCGAGGCCCTAAGATGACTAACTTTTTCAAAGAAGGTGGGTCTATTTATTTTGGCGAATATGAGATGCGAGAATTGATTCATAATGGTGCAAGAATTCAGTGGCACGCTAACCTCCATAATAGGAATAAACATGAACGCATGGTTGATACCCATGATTCATCGTTTCTGCAGACTTCTTATTTCGTGAGCATGCGTTCCTGTTACTTGTCCTATCGCTGTGTAAATACCTGGATCTTAACATCATACAATCCGTATCGATTTGGACGACAATTTGGCTTTTACCAGGATATCTCCAATGAGATAGGGGGCATGTCACCTGCGATCACACTAGATAATATATTATATCACTAGAGAACATGTACAAGACGTAACACTTTATCTGAGTTATATTTGCCTGCTCGTTCATTAGAGCCTTGCAAGCATGTGACGCAACAATTTACAGACTGGTGGGCCACGAGGCACGAGACCTATTTTGAGGATAATAGACATCATTTGGTGAGTGGTGCCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGGAGAAACCTGGATCGTAAAGAAATTCGCTTGGTTGAAGTGATGGCTGCTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATTAGAGCAATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAGATGATGATCCCGACAG

mRNA sequence

AGCTATGACAAGCCAACCACACGAAAACAAAAGATGACGTCGCGCTCCAAATCTACTCAGAACCCTGATGGTTCGAAGATCCAGGCTCTTGAATGGTCCTCTAGGAGAACATGTTATTTGCAGAAGTTGGAATCAGGAACTATCTGAAGGATGAAACGTATTTGGCTGCCTTCTTATCTTGCTGGTTATGCCTTTTCCTATTTTCACAGAAAGGATCATTTCTTCGTCCCGGAGTATTTATGGCTGCAAGCTTAATGGCCGCTGGCACTATTTATAGTTTTGCAGTTTCAATTTTGGCGAACGTATATCATGGGCTAGGTTTGATAACCAAAGCCTCCAATCCAATAAGATGCATGGACTTTCACTTTTTCATGCATTACATCCATGGCTAGTTAGCCCATTATTTTGGTACGCATTATCCACTTTCCACAAAAGTTCGAGGCCCTAAGATGACTAACTTTTTCAAAGAAGGTGGGTCTATTTATTTTGGCGAATATGAGATGCGAGAATTGATTCATAATGGTGCAAGAATTCAGTGGCACGCTAACCTCCATAATAGGAATAAACATGAACGCATGGTTGATACCCATGATTCATCGTTTCTGCAGACTTCTTATTTCGTGAGCATGCGTTCCTGTTACTTGTCCTATCGCTGTGTAAATACCTGGATCTTAACATCATACAATCCGTATCGATTTGGACGACAATTTGGCTTTTACCAGGATATCTCCAATGAGATAGGGGGCATGTCACCTGCGATCACACTAGATAATATATTATATCACTAGAGAACATGTACAAGACGTAACACTTTATCTGAGTTATATTTGCCTGCTCGTTCATTAGAGCCTTGCAAGCATGTGACGCAACAATTTACAGACTGGTGGGCCACGAGGCACGAGACCTATTTTGAGGATAATAGACATCATTTGGTGAGTGGTGCCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGGAGAAACCTGGATCGTAAAGAAATTCGCTTGGTTGAAGTGATGGCTGCTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATTAGAGCAATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAGATGATGATCCCGACAG

Coding sequence (CDS)

ATGACTAACTTTTTCAAAGAAGGTGGGTCTATTTATTTTGGCGAATATGAGATGCGAGAATTGATTCATAATGGTGCAAGAATTCAGTGGCACGCTAACCTCCATAATAGGAATAAACATGAACGCATGGTTGATACCCATGATTCATCGTTTCTGCAGACTTCTTATTTCGTGAGCATGCGTTCCTGTTACTTGTCCTATCGCTGTGTAAATACCTGGATCTTAACATCATACAATCCGTATCGATTTGGACGACAATTTGGCTTTTACCAGGATATCTCCAATGAGATAGGGGGCATGTCACCTGCGATCACACTAGATAATATATTATATCACTAG

Protein sequence

MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSMRSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH

Homology

[Close]

BLAST of MELO3C032455.jh1 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (544), Expect = 4.96e-62
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELIHNG RIQWHANLHNRNKHERMVDTHDSSFLQ SYFVSM
Sbjct: 419 MTNFSGEGGSIYFGEYEARELIHNGVRIQWHANLHNRNKHERMVDTHDSSFLQMSYFVSM 478

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYRFGRQFGFYQD+ N+IGGM PAITLDNILYH
Sbjct: 479 RSCYLSSRCENTWIITSYSPYRFGRQFGFYQDLPNDIGGMPPAITLDNILYH 530

[Close]

BLAST of MELO3C032455.jh1 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (542), Expect = 7.29e-62
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELIHNGARIQWHA+L NR+KHERMVDTHDSSFLQTSYFVSM
Sbjct: 385 MTNFSDEGGSIYFGEYEARELIHNGARIQWHASLQNRSKHERMVDTHDSSFLQTSYFVSM 444

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYRFGRQFGFYQD+ N+IGGMSPAITLDNILYH
Sbjct: 445 RSCYLSSRCENTWIITSYSPYRFGRQFGFYQDLPNDIGGMSPAITLDNILYH 496

[Close]

BLAST of MELO3C032455.jh1 vs. NCBI nr
Match: TYK18946.1 (hypothetical protein E5676_scaffold418G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 5.42e-61
Identity = 95/112 (84.82%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELI+NGA IQW ANL NR+KHERMVDTHDSSFLQ SYFVSM
Sbjct: 1   MTNFSGEGGSIYFGEYEARELIYNGAGIQWQANLQNRSKHERMVDTHDSSFLQMSYFVSM 60

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYRFGRQFGFYQ+ SN+IGGM PAITLDNILYH
Sbjct: 61  RSCYLSSRCENTWIITSYSPYRFGRQFGFYQNFSNDIGGMPPAITLDNILYH 112

[Close]

BLAST of MELO3C032455.jh1 vs. NCBI nr
Match: ADN34118.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 208 bits (529), Expect = 5.53e-61
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELIHNGARIQWHANL NR+KHERMVDTHDSSFLQ SYFVSM
Sbjct: 152 MTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMSYFVSM 211

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYR GRQFGFYQD+ N+IGGM PAITLDNILYH
Sbjct: 212 RSCYLSSRCENTWIITSYSPYRLGRQFGFYQDLPNDIGGMPPAITLDNILYH 263

[Close]

BLAST of MELO3C032455.jh1 vs. NCBI nr
Match: KAA0054204.1 (hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa] >TYK15059.1 hypothetical protein E5676_scaffold45G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 1.07e-60
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE  ELIHNGARIQWHANL NR+KHE MVDTHDSSF+Q SYF+SM
Sbjct: 1   MTNFSGEGGSIYFGEYEAHELIHNGARIQWHANLQNRSKHEHMVDTHDSSFMQMSYFISM 60

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSYNPYRFGRQFGFYQD+ N IGGM PAI L+NILYH
Sbjct: 61  RSCYLSSRCENTWIITSYNPYRFGRQFGFYQDLPNYIGGMPPAIALNNILYH 112

[Close]

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 2.40e-62
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELIHNG RIQWHANLHNRNKHERMVDTHDSSFLQ SYFVSM
Sbjct: 419 MTNFSGEGGSIYFGEYEARELIHNGVRIQWHANLHNRNKHERMVDTHDSSFLQMSYFVSM 478

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYRFGRQFGFYQD+ N+IGGM PAITLDNILYH
Sbjct: 479 RSCYLSSRCENTWIITSYSPYRFGRQFGFYQDLPNDIGGMPPAITLDNILYH 530

[Close]

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 3.53e-62
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELIHNGARIQWHA+L NR+KHERMVDTHDSSFLQTSYFVSM
Sbjct: 385 MTNFSDEGGSIYFGEYEARELIHNGARIQWHASLQNRSKHERMVDTHDSSFLQTSYFVSM 444

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYRFGRQFGFYQD+ N+IGGMSPAITLDNILYH
Sbjct: 445 RSCYLSSRCENTWIITSYSPYRFGRQFGFYQDLPNDIGGMSPAITLDNILYH 496

[Close]

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D5Z3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00300 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 2.62e-61
Identity = 95/112 (84.82%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELI+NGA IQW ANL NR+KHERMVDTHDSSFLQ SYFVSM
Sbjct: 1   MTNFSGEGGSIYFGEYEARELIYNGAGIQWQANLQNRSKHERMVDTHDSSFLQMSYFVSM 60

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYRFGRQFGFYQ+ SN+IGGM PAITLDNILYH
Sbjct: 61  RSCYLSSRCENTWIITSYSPYRFGRQFGFYQNFSNDIGGMPPAITLDNILYH 112

[Close]

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL
Match: E5GCB9 (PMD domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 2.68e-61
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE RELIHNGARIQWHANL NR+KHERMVDTHDSSFLQ SYFVSM
Sbjct: 152 MTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMSYFVSM 211

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSY+PYR GRQFGFYQD+ N+IGGM PAITLDNILYH
Sbjct: 212 RSCYLSSRCENTWIITSYSPYRLGRQFGFYQDLPNDIGGMPPAITLDNILYH 263

[Close]

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UGA8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001090 PE=4 SV=1)

HSP 1 Score: 202 bits (513), Expect = 5.16e-61
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MTNFFKEGGSIYFGEYEMRELIHNGARIQWHANLHNRNKHERMVDTHDSSFLQTSYFVSM 60
           MTNF  EGGSIYFGEYE  ELIHNGARIQWHANL NR+KHE MVDTHDSSF+Q SYF+SM
Sbjct: 1   MTNFSGEGGSIYFGEYEAHELIHNGARIQWHANLQNRSKHEHMVDTHDSSFMQMSYFISM 60

Query: 61  RSCYLSYRCVNTWILTSYNPYRFGRQFGFYQDISNEIGGMSPAITLDNILYH 112
           RSCYLS RC NTWI+TSYNPYRFGRQFGFYQD+ N IGGM PAI L+NILYH
Sbjct: 61  RSCYLSSRCENTWIITSYNPYRFGRQFGFYQDLPNYIGGMPPAIALNNILYH 112

The following BLAST results are available for this feature:

BLAST of MELO3C032455.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053466.1	4.96e-62	88.39	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	7.29e-62	88.39	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
TYK18946.1	5.42e-61	84.82	hypothetical protein E5676_scaffold418G00300 [Cucumis melo var. makuwa]	[more]
ADN34118.1	5.53e-61	86.61	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0054204.1	1.07e-60	83.04	hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa] >TYK150...	[more]

BLAST of MELO3C032455.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGW6	2.40e-62	88.39	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TX42	3.53e-62	88.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D5Z3	2.62e-61	84.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB9	2.68e-61	86.61	PMD domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7UGA8	5.16e-61	83.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C032455.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 4..99
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 4..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032455.jh1.t1	MELO3C032455.jh1.t1	mRNA