MELO3C032436 (gene) Melon (DHL92) v4

Overview
NameMELO3C032436
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscription factor bHLH36
Locationchr01: 8775804 .. 8776101 (-)
RNA-Seq ExpressionMELO3C032436
SyntenyMELO3C032436
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGACAAAGGCGTTGTTGAGTTAGAGAGAGAAAGGGAGAGGCAAAGAAGACAAAAAATTGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCTTCCTGAATTTATCAAGGTAATTTGTAGGACTGTGCACAAGGGAAGAGATAAATGGAGGGAGAAGAAATGAAAAAAAAAAAATCAAGAACTCATCGGCGACGATATGAGTCTCCTCACCGTGGGTCTTCATCACTATGGGTCTCTTCGCTGTGGGTCTCTGTTGTCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAG

mRNA sequence

TGGACAAAGGCGTTGTTGAGTTAGAGAGAGAAAGGGAGAGGCAAAGAAGACAAAAAATTGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCTTCCTGAATTTATCAAGGTAATTTGTAGGACTGTGCACAAGGGAAGAGATAAATGGAGGGAGAAGAAATGAAAAAAAAAAAATCAAGAACTCATCGGCGACGATATGAGTCTCCTCACCGTGGGTCTTCATCAGTCTCTGTTGTCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAG

Coding sequence (CDS)

GACAAAGGCGTTGTTGAGTTAGAGAGAGAAAGGGAGAGGCAAAGAAGACAAAAAATTGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCTTCCTGAATTTATCAAGGTAATTTGTAGGACTGTGCACAAGGGAAGAGATAAATGGAGGGAGAAGAAATGA

Protein sequence

DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK
Homology
BLAST of MELO3C032436 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK 54
          DKG+VEL RERERQRRQ+IGALYMSLRTLL  EFIKVI  T+H+GRDKWREKK
Sbjct: 2  DKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKK 54

BLAST of MELO3C032436 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK 54
          DKGVV+LERERERQRRQ+IGALYM++RTLL  EFIKVIC  VH+ RDKWREKK
Sbjct: 2  DKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKK 54

BLAST of MELO3C032436 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK 54
          DK VVEL RERERQRRQ+I ALYM LR LL  EFIKVIC TVH+GRDK REKK
Sbjct: 2  DKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKK 54

BLAST of MELO3C032436 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKV-ICRTVHKGRDK 49
          DKGVVEL RERERQRRQ+I ALYMSLRTLL  EFIKV + +   +G +K
Sbjct: 7  DKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVSVAKKKGRGDEK 55

BLAST of MELO3C032436 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK 54
          DKGVV+LERERERQRRQ+IGALYM++RTLL  EFIKVIC  VH+ RDKWREKK
Sbjct: 2  DKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKK 54

BLAST of MELO3C032436 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK 54
          DKG+VEL RERERQRRQ+IGALYMSLRTLL  EFIKVI  T+H+GRDKWREKK
Sbjct: 2  DKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKK 54

BLAST of MELO3C032436 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.9e-12
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKVICRTVHKGRDKWREKK 54
          DK VVEL RERERQRRQ+I ALYM LR LL  EFIKVIC TVH+GRDK REKK
Sbjct: 2  DKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKK 54

BLAST of MELO3C032436 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-06
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  DKGVVELERERERQRRQKIGALYMSLRTLLLPEFIKV-ICRTVHKGRDK 49
          DKGVVEL RERERQRRQ+I ALYMSLRTLL  EFIKV + +   +G +K
Sbjct: 7  DKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVSVAKKKGRGDEK 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30150.15.2e-1483.02transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0065871.15.2e-1481.13retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0033316.11.8e-1179.25transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
KAA0044825.11.2e-0569.39transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VJK92.5e-1481.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3K52.5e-1483.02Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7STJ58.9e-1279.25Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TTV05.6e-0669.39Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032436.1MELO3C032436.1mRNA