MELO3C032365 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032365
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Translation initiation factor IF-1, chloroplastic
Location	chr07: 5410761 .. 5410999 (-)
RNA-Seq Expression	MELO3C032365
Synteny	MELO3C032365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTGATCCATATACTAGGTTATAGGGAGTCAAAATTTCAGTAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

mRNA sequence

ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTGATCCATATACTAGTAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Coding sequence (CDS)

ATGAAAAAGCAAAAAAGGATTTCTGAAGGTTTCATTACTGAATCACCTACCAATGATATGTTTTGGATTTGTTTATATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCAACATAGTTTGATCCATATACTAGTAAGTTGTTATGATTCAACCAAGACTAGAAGACGTATAATTTATAGACTACGAAACAAAGATTCGAATGATTAG

Protein sequence

MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHILVSCYDSTKTRRRIIYRLRNKDSND

Homology

[Close]

BLAST of MELO3C032365 vs. NCBI nr
Match: YP_004841818.1 (translational initiation factor 1 [Cucumis melo subsp. melo] >YP_009860108.1 translational initiation factor 1 [Cucumis melo subsp. agrestis] >AEM76927.1 translational initiation factor 1 [Cucumis melo subsp. melo] >QKK36691.1 translational initiation factor 1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQHS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. NCBI nr
Match: A5J1W9.1 (RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus] >AVE15366.1 InfA [Cucumis sativus var. sativus] >ABI97451.1 translation initiation factor 1 [Cucumis sativus] >ABI98780.1 translational initiation factor 1 [Cucumis sativus] >ARQ16113.1 translation initiation factor 1 [Cucumis sativus] >ARQ16196.1 translation initiation factor 1 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 6.0e-26
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+HS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. NCBI nr
Match: QJA16179.1 (translational initiation factor 1 [Siraitia grosvenorii])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 57/75 (76.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRI EG ITES  N MFW+CL N DPILGYVSGRI+HS IHIL    VS YDST+T
Sbjct: 1  MKEQKRIYEGLITESLPNGMFWVCLDNGDPILGYVSGRIRHSFIHILGKIAVSSYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          R RIIYRLRNKDSND
Sbjct: 61 RGRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. NCBI nr
Match: ASY96339.1 (translation initiation factor 1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 94.0 bits (232), Expect = 5.7e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL 48
          MK+QKRISEG ITESPTNDMFW+CL NEDPILGYVSGRIQHS IHIL
Sbjct: 1  MKEQKRISEGLITESPTNDMFWVCLDNEDPILGYVSGRIQHSFIHIL 47

[Close]

BLAST of MELO3C032365 vs. NCBI nr
Match: AHM88719.1 (translational initiation factor 1, partial [Lagenaria siceraria] >AHM88778.1 translational initiation factor 1, partial [Lagenaria siceraria] >AHM88836.1 translational initiation factor 1, partial [Lagenaria siceraria] >AHM88893.1 translational initiation factor 1, partial [Lagenaria siceraria] >AHM88951.1 translational initiation factor 1, partial [Lagenaria siceraria])

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 8  SEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKTRRRII 62
          SEG ITES TN MFW+CL NEDPILGYVSGRI+HS IHIL    VSCYDST+T+ RII
Sbjct: 1  SEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILVKISVSCYDSTRTKGRII 58

[Close]

BLAST of MELO3C032365 vs. ExPASy Swiss-Prot
Match: A5J1W9 (Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.9e-29
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+HS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. ExPASy Swiss-Prot
Match: P08698 (Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=infA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.3e-18
Identity = 53/79 (67.09%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL--------VSCYD 60
          MK+QK I EG ITES  N MFW+ L NEDPILGYVSGRI+ S I IL        VS YD
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 72
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]

BLAST of MELO3C032365 vs. ExPASy Swiss-Prot
Match: Q95GN8 (Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426 GN=infA PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-17
Identity = 51/79 (64.56%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL--------VSCYD 60
          MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+ S I IL        VS YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 72
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]

BLAST of MELO3C032365 vs. ExPASy Swiss-Prot
Match: A1XFZ0 (Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=infA PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-17
Identity = 51/79 (64.56%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL--------VSCYD 60
          MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+ S I IL        VS YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 72
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]

BLAST of MELO3C032365 vs. ExPASy Swiss-Prot
Match: Q6EW17 (Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba OX=34301 GN=infA PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-17
Identity = 51/79 (64.56%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL--------VSCYD 60
          MK+QK I EG ITES  N MFW+ L NED +LGYVSGRI+ S I IL        VS YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRRRIIYRLRNKDSND 72
          S  TR RIIYRLRNKDSND
Sbjct: 61 S--TRGRIIYRLRNKDSND 77

[Close]

BLAST of MELO3C032365 vs. ExPASy TrEMBL
Match: A0A6M8YGU1 (Translational initiation factor 1 OS=Cucumis melo subsp. agrestis OX=217619 GN=infA PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQHS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. ExPASy TrEMBL
Match: G3ETT2 (Translational initiation factor 1 OS=Cucumis melo subsp. melo OX=412675 GN=infA PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQHS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. ExPASy TrEMBL
Match: A0A1S4EU46 (translational initiation factor 1 OS=Cucumis melo OX=3656 GN=infA PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISEG ITES TNDMFW+CL NEDPILGYVSGRIQHS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. ExPASy TrEMBL
Match: A0A1X9Q1P3 (Translation initiation factor 1 OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+HS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. ExPASy TrEMBL
Match: A0A343UM67 (InfA OS=Cucumis sativus var. sativus OX=869827 GN=infA PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MKKQKRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL----VSCYDSTKT 60
          MK+QKRISE  ITES TNDMFW+CL NEDPILGYVSGRI+HS IHIL    VSCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RRRIIYRLRNKDSND 72
          RRRIIYRLRNKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]

BLAST of MELO3C032365 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 5   KRISEGFITESPTNDMFWICLYNEDPILGYVSGRIQHSLIHIL--------VSCYDSTKT 64
           K + EG +TES  N MF + L N D ILGY+ G+I+ + I IL        +S YDSTK 
Sbjct: 72  KTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDSTK- 131

Query: 65  RRRIIYRLRNKD 69
             RII+R+ ++D
Sbjct: 132 -GRIIFRMSSRD 141

The following BLAST results are available for this feature:

BLAST of MELO3C032365 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841818.1	5.5e-27	85.33	translational initiation factor 1 [Cucumis melo subsp. melo] >YP_009860108.1 tra...	[more]
A5J1W9.1	6.0e-26	82.67	RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus...	[more]
QJA16179.1	1.5e-21	76.00	translational initiation factor 1 [Siraitia grosvenorii]	[more]
ASY96339.1	5.7e-16	89.36	translation initiation factor 1 [Cucumis melo subsp. agrestis]	[more]
AHM88719.1	4.8e-15	75.86	translational initiation factor 1, partial [Lagenaria siceraria] >AHM88778.1 tra...	[more]

BLAST of MELO3C032365 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5J1W9	7.9e-29	82.67	Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=...	[more]
P08698	6.3e-18	67.09	Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]
Q95GN8	5.3e-17	64.56	Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426...	[more]
A1XFZ0	5.3e-17	64.56	Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=i...	[more]
Q6EW17	5.3e-17	64.56	Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba OX=34301 GN=i...	[more]

BLAST of MELO3C032365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M8YGU1	2.6e-27	85.33	Translational initiation factor 1 OS=Cucumis melo subsp. agrestis OX=217619 GN=i...	[more]
G3ETT2	2.6e-27	85.33	Translational initiation factor 1 OS=Cucumis melo subsp. melo OX=412675 GN=infA ...	[more]
A0A1S4EU46	2.6e-27	85.33	translational initiation factor 1 OS=Cucumis melo OX=3656 GN=infA PE=3 SV=1	[more]
A0A1X9Q1P3	2.9e-26	82.67	Translation initiation factor 1 OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1	[more]
A0A343UM67	2.9e-26	82.67	InfA OS=Cucumis sativus var. sativus OX=869827 GN=infA PE=3 SV=1	[more]

BLAST of MELO3C032365 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	2.1e-08	44.44	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..71 e-value: 4.2E-9 score: 37.9
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 2..70
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032365.1	MELO3C032365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity