MELO3C032347.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032347.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr07: 3563155 .. 3563847 (+)
RNA-Seq ExpressionMELO3C032347.jh1
SyntenyMELO3C032347.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGTGTTGGCTATCCTACAATTATGGTAGCTTCTGTAGTTTGAAGTTAGTTTTAGTGAAAAATTTGAGAGATTGTATATTACTGAAAAATAGTGAAAATTCTAGGGAGTAAGTTATGGATGTGAGAGAGGGAGAGAGATATGTTTTTAATCAAACCTATTTATGTTTTAGGGACTTAAACGATGGATAAGGGTTGGATGAAAATTAGAAATTAGTTCTCCCTTGTGTATAGACAGAGAGTGACCCAATTTTTAGAATTTGCCTAGTTTCACGTTGATACTTACAGACGATTAAGCTGTCCATGCAAGAGATGTTTGAATTTAAATCGGAGCTCATTAGAGGGTGTGGAACGAAATCTATTGACTATTGGAATATCCCCCTACTACACAGAATAGGTGTATCATGGAGAGTCATTAAGCTTTAGAGGTACAGAAAACTTTGAGAAAGGAACTAGTAGTAGGTAATTTAATGAAGAAGATGATATGTTTGGTATACTAAATGATTTACAAGCCCCGATTGAAGAGGAAGAGGAATTAGAGGAACGTCATTTAGAAGATGAAATGCCGATGAATGTTGGGGTAGATATAGATGAGGATAGAACAAATATATTTCAGAACTTATTAAATGAAGCACGTAATGAGTTGTACCCTGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTGA

mRNA sequence

GTTGTGTTGGCTATCCTACAATTATGGGACTTAAACGATGGATAAGGGTTGGATGAAAATTAGAAATTAGTTCTCCCTTGTGTATAGACAGAGAGTGACCCAATTTTTAGAATTTGCCTAGTTTCACGTTGATACTTACAGACGATTAAGCTGTCCATGCAAGAGATGTTTGAATTTAAATCGGAGCTCATTAGAGGGTGTGGAACGAAATCTATTGACTATTGGAATATCCCCCTACTACACAGAATAGGTGTATCATGGAGAGTCATTAAGCTTTAGAGGTACAGAAAACTTTGAGAAAGGAACTAGTAGTAGGTAATTTAATGAAGAAGATGATATGTTTGGTATACTAAATGATTTACAAGCCCCGATTGAAGAGGAAGAGGAATTAGAGGAACGTCATTTAGAAGATGAAATGCCGATGAATGTTGGGGTAGATATAGATGAGGATAGAACAAATATATTTCAGAACTTATTAAATGAAGCACGTAATGAGTTGTACCCTGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTGA

Coding sequence (CDS)

ATGTTTGGTATACTAAATGATTTACAAGCCCCGATTGAAGAGGAAGAGGAATTAGAGGAACGTCATTTAGAAGATGAAATGCCGATGAATGTTGGGGTAGATATAGATGAGGATAGAACAAATATATTTCAGAACTTATTAAATGAAGCACGTAATGAGTTGTACCCTGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTG

Protein sequence

MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSSLNFLVKL
Homology
[Close]
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match: KAA0066710.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 8.76e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60
          MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE
Sbjct: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60

Query: 61 FSSLNFLVKL 70
          FSSLNFLVKL
Sbjct: 61 FSSLNFLVKL 70

[Close]
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match: TYK27858.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 1.11e-35
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60
          MFGILNDLQAPIEEEEELEERHLEDEM MNVGVDIDEDRTNIFQNLLNEARNELYPGCSE
Sbjct: 1  MFGILNDLQAPIEEEEELEERHLEDEMSMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60

Query: 61 FSSLNFLVKL 70
          FSSLNFLVKL
Sbjct: 61 FSSLNFLVKL 70

[Close]
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match: TYK16767.1 (transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 1.32e-30
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60
          MFG+LNDL+APIE+EEE+EE  LEDEM  N+GVD+DED TNIFQ+LLNE RN+LYPGCSE
Sbjct: 30 MFGMLNDLEAPIEQEEEIEEGRLEDEMSRNIGVDLDEDTTNIFQDLLNETRNKLYPGCSE 89

Query: 61 FSSLNFLVKL 70
          F SLNFLVKL
Sbjct: 90 FFSLNFLVKL 99

[Close]
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match: KAA0032327.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (288), Expect = 4.85e-29
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTN-IFQNLLNEARNELYPGCS 60
          MFG+LNDL APIE EEE+EE  LEDEMPMNVGV+ID DRTN IFQ+LLNEARNELYPGCS
Sbjct: 1  MFGMLNDLPAPIEHEEEIEELRLEDEMPMNVGVEIDGDRTNNIFQDLLNEARNELYPGCS 60

Query: 61 EFSSLNFLVKL 70
          EF SLNFLVKL
Sbjct: 61 EFLSLNFLVKL 71

[Close]
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match: KAA0026277.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21473.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 1.71e-27
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 4  ILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSS 63
          +LNDLQAPIE+EEE EER LEDEMPMNVGVDID+DRTNIF +LLNEARNELYPG SEFSS
Sbjct: 1  MLNDLQAPIEQEEETEERRLEDEMPMNVGVDIDKDRTNIFHDLLNEARNELYPGYSEFSS 60

Query: 64 LNFLVKL 70
          LN LVKL
Sbjct: 61 LNLLVKL 67

[Close]
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VHN9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00440 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 4.24e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60
          MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE
Sbjct: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60

Query: 61 FSSLNFLVKL 70
          FSSLNFLVKL
Sbjct: 61 FSSLNFLVKL 70

[Close]
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DWP4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00360 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 5.36e-36
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60
          MFGILNDLQAPIEEEEELEERHLEDEM MNVGVDIDEDRTNIFQNLLNEARNELYPGCSE
Sbjct: 1  MFGILNDLQAPIEEEEELEERHLEDEMSMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60

Query: 61 FSSLNFLVKL 70
          FSSLNFLVKL
Sbjct: 61 FSSLNFLVKL 70

[Close]
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CY95 (Transposon protein, putative, CACTA, En/Spm sub-class, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00220 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 6.39e-31
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSE 60
          MFG+LNDL+APIE+EEE+EE  LEDEM  N+GVD+DED TNIFQ+LLNE RN+LYPGCSE
Sbjct: 30 MFGMLNDLEAPIEQEEEIEEGRLEDEMSRNIGVDLDEDTTNIFQDLLNETRNKLYPGCSE 89

Query: 61 FSSLNFLVKL 70
          F SLNFLVKL
Sbjct: 90 FFSLNFLVKL 99

[Close]
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SSE5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001860 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 2.35e-29
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1  MFGILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTN-IFQNLLNEARNELYPGCS 60
          MFG+LNDL APIE EEE+EE  LEDEMPMNVGV+ID DRTN IFQ+LLNEARNELYPGCS
Sbjct: 1  MFGMLNDLPAPIEHEEEIEELRLEDEMPMNVGVEIDGDRTNNIFQDLLNEARNELYPGCS 60

Query: 61 EFSSLNFLVKL 70
          EF SLNFLVKL
Sbjct: 61 EFLSLNFLVKL 71

[Close]
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SNK0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00050 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 8.28e-28
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 4  ILNDLQAPIEEEEELEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSS 63
          +LNDLQAPIE+EEE EER LEDEMPMNVGVDID+DRTNIF +LLNEARNELYPG SEFSS
Sbjct: 1  MLNDLQAPIEQEEETEERRLEDEMPMNVGVDIDKDRTNIFHDLLNEARNELYPGYSEFSS 60

Query: 64 LNFLVKL 70
          LN LVKL
Sbjct: 61 LNLLVKL 67

The following BLAST results are available for this feature:
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066710.18.76e-37100.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK27858.11.11e-3598.57DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
TYK16767.11.32e-3078.57transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo v... [more]
KAA0032327.14.85e-2984.51CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0026277.11.71e-2786.57CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21473.1 CACTA en-... [more]
BLAST of MELO3C032347.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VHN94.24e-37100.00DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DWP45.36e-3698.57DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3CY956.39e-3178.57Transposon protein, putative, CACTA, En/Spm sub-class, expressed OS=Cucumis melo... [more]
A0A5A7SSE52.35e-2984.51CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7SNK08.28e-2886.57CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C032347.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032347.jh1.t1MELO3C032347.jh1.t1mRNA