MELO3C032289.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032289.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr06: 32346275 .. 32347999 (+)
RNA-Seq Expression	MELO3C032289.jh1
Synteny	MELO3C032289.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAACAAACCCTTCTTGGAGTCCTAACTGCGTTCACAATGGCCCAACGTCAGATGCTCCTAACGTTGGAGGCACTATTGAACGACAATAAGTGTCTTCCACAGACACCCTACGATACAAGACATAAAATTAGGCAGCTTGCGTACTTTCGGATAATACATGAGTATGATCTTGTGTGTTGCGAAAGCACCCGCATGGATAGGCAAACATTCGCAATTCTATTCCACTTACTTAGGATTGTAGCTGGTCTTTCGTCGACAGAGATTGTCGATGTTGAGGAAATGATTACGATGTTCTTGCATGTCCTTGTGCATGACGTGAAGAACCGCGTAATTCAATTGGAATTTGTACAATTCAGAGAGACAGTCTCACGATATTTTAACCTCGTCCTGTTGGGTATGCTATGACTATACGACAAGTTGATAAAGAAACATGTCCCGGTAACAAACAACTGCATTGATCAACGTTGGAAGTATTTCGAAGTGGGCATAGTATATGTGATAAGTTTGGTACATAAAGGTGAACGTGCCCGCAACATATCGCCCTACGTTCAGAATGCGAAAAGGGAAAATTGCAACGTCTGCGACACCAAAGGGGATTTCGTATATGTCATCGCCAATTGGGAAGGATCTGCAGCAGACTCGCGAATTCTCGAGGATGCCCTTGTCCGACAAAACGAACTGCAAGTGTCAAAGGGTATTTACAATCATCATTTTCATTGCTCTTTTGAAGTTACATATGGAATGCTCATAGAGGAATGCTTTTCGGTACATGATATTATTATCTATGCGATGTGGGTTATCTAAATGCTGAGGAATTTCTCGCCCCATACAGAGGCCAGTGCTACCATTTACAAGAGTGGAGTGGTGATGGAAATGCCCCCAACGACTGCAAATGAATACTTCAACATGAAGCACTCTTCGACAAGAAATATGATTGAGCACGCTTTCGATCTTCTTAAAGATCGTTGGGCAATACTTCGTGGAAAGTCCTACTATCCCCTCCAAGTGTAGTGTCGCACCATCCTAGCATATTGCTTGCTATATAATTTGATAAACAAAGAAATGACAAATTGCAACGACATTGACGAAGTTGACGAGGGGGACTCTGCATACGCCACGATCACCGCTACAGAAAACATTCAGTTCATTGACACGACAACCGAGTGGTCTAACTGGTGCGATGATTTAGCTGAAGCAATGTTCACAAAATGACAGTTGCGTAACGCTTAGCTAAAGTCATTTAAAATTATAACCCTTCGGTTGTATGCCAATTTAAATTACGTAGACTTTGTCGTTATTTTATATGTAATGTAACCGTGCATTATTTACATATATTATATGTCATAATATTGTTTCCTCTTCGTTTTTGTGTCGTAAATGTCAAAATGTAAAATTACTAACGGGTTCCATGAATTTTTTGTCGTTTTTCATTCTCAGTATGATAACATCATCGTGTGCCCCGAAGCATGTATGAACGAAAGAGGAGGAGGACACTCTTGTACGTTCCGACCAGGTTACTTAGTCCAACTGGTACGCATGATGGCCAAAAAATTACCTAAATGTTGGCTCTACGCAACCACTGTAATGGACTGCAGAATAAAGACACTTAAGCGGACATTCCAGGCCATCGCAGAAATGCGAGGGCCAGCGTATAGTGGGTTCGGTTGGAATGATGATGCAAAATGCATAATTGCGGAGAAGAAACTCTTCGATAACTAG

mRNA sequence

ATGGATCAACAAACCCTTCTTGGAGTCCTAACTGCGTTCACAATGGCCCAACGTCAGATGCTCCTAACGTTGGAGGCACTATTGAACGACAATAAGTGTCTTCCACAGACACCCTACGATACAAGACATAAAATTAGGCAGCTTGCGTACTTTCGGATAATACATGAGTATGATCTTGTGTGTTGCGAAAGCACCCGCATGGATAGGCAAACATTCGCAATTCTATTCCACTTACTTAGGATTGTAGCTGGTCTTTCGTCGACAGAGATTGTCGATGTTGAGGAAATGATTACGATGTTCTTGCATGTCCTTGTGCATGACGTGAAGAACCGCTATGATAACATCATCGTGTGCCCCGAAGCATGTATGAACGAAAGAGGAGGAGGACACTCTTGTACGTTCCGACCAGGTTACTTAGTCCAACTGGTACGCATGATGGCCAAAAAATTACCTAAATGTTGGCTCTACGCAACCACTGTAATGGACTGCAGAATAAAGACACTTAAGCGGACATTCCAGGCCATCGCAGAAATGCGAGGGCCAGCGTATAGTGGGTTCGGTTGGAATGATGATGCAAAATGCATAATTGCGGAGAAGAAACTCTTCGATAACTAG

Coding sequence (CDS)

ATGGATCAACAAACCCTTCTTGGAGTCCTAACTGCGTTCACAATGGCCCAACGTCAGATGCTCCTAACGTTGGAGGCACTATTGAACGACAATAAGTGTCTTCCACAGACACCCTACGATACAAGACATAAAATTAGGCAGCTTGCGTACTTTCGGATAATACATGAGTATGATCTTGTGTGTTGCGAAAGCACCCGCATGGATAGGCAAACATTCGCAATTCTATTCCACTTACTTAGGATTGTAGCTGGTCTTTCGTCGACAGAGATTGTCGATGTTGAGGAAATGATTACGATGTTCTTGCATGTCCTTGTGCATGACGTGAAGAACCGCTATGATAACATCATCGTGTGCCCCGAAGCATGTATGAACGAAAGAGGAGGAGGACACTCTTGTACGTTCCGACCAGGTTACTTAGTCCAACTGGTACGCATGATGGCCAAAAAATTACCTAAATGTTGGCTCTACGCAACCACTGTAATGGACTGCAGAATAAAGACACTTAAGCGGACATTCCAGGCCATCGCAGAAATGCGAGGGCCAGCGTATAGTGGGTTCGGTTGGAATGATGATGCAAAATGCATAATTGCGGAGAAGAAACTCTTCGATAACTAG

Protein sequence

MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNRYDNIIVCPEACMNERGGGHSCTFRPGYLVQLVRMMAKKLPKCWLYATTVMDCRIKTLKRTFQAIAEMRGPAYSGFGWNDDAKCIIAEKKLFDN

Homology

[Close]

BLAST of MELO3C032289.jh1 vs. NCBI nr
Match: KAA0051365.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 1.05e-67
Identity = 145/356 (40.73%), Postives = 172/356 (48.31%), Query Frame = 0


Query: 1   MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV 60
           MDQQTLL VLTAFT+ QRQMLLTLE L+ND++ +  T +DTRH+I QLAYF +IHE DLV
Sbjct: 1   MDQQTLLVVLTAFTLVQRQMLLTLELLMNDSRRITHTSFDTRHRISQLAYFCVIHESDLV 60

Query: 61  CCESTRMDRQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHD------------- 120
           C +STRMDR+TFAIL HLL  ++GL S EIVDVE+M+  FLH+L HD             
Sbjct: 61  CRQSTRMDRRTFAILCHLLWTISGLLSIEIVDVEQMVATFLHILAHDELIKRPVPVTNNC 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 NDQRWKCFENCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGLCNMKGDFVYVLAGW 180

Query: 181 ----VKNR---------------------------------------------------- 204
               V +R                                                    
Sbjct: 181 KGFAVDSRILRDALARDNGLQVPKGYYYLCDAGYPNVEGFLDPYRGQREMAYCDDVGDVD 240

[Close]

BLAST of MELO3C032289.jh1 vs. NCBI nr
Match: KAA0065784.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96523.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (550), Expect = 4.63e-67
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV 60
           MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV
Sbjct: 1   MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV 60

Query: 61  CCESTRMDRQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNR 111
           CCESTRMD QTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNR
Sbjct: 61  CCESTRMDNQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNR 111

[Close]

BLAST of MELO3C032289.jh1 vs. NCBI nr
Match: TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 8.54e-63
Identity = 133/334 (39.82%), Postives = 151/334 (45.21%), Query Frame = 0


Query: 28  LNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSS 87
           +ND++ +  TP DT H+IRQLAYFR IHE +LVCC+STRMDRQTF ILFHLLRIV+GLSS
Sbjct: 1   MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60

Query: 88  TEIVDVEEMITMFLHVLVHDVKNR------------------------------------ 147
           TEIVDVEEM+  FLHVL HDVKNR                                    
Sbjct: 61  TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120

Query: 148 ------------------------------------------------------------ 204
                                                                       
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180

[Close]

BLAST of MELO3C032289.jh1 vs. NCBI nr
Match: TYK02619.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 5.02e-58
Identity = 127/294 (43.20%), Postives = 145/294 (49.32%), Query Frame = 0


Query: 28  LNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSS 87
           +N+NK LP TP DTRH+IR+LAYF +IHE DLVC +STRMDR+TFAIL HLLR VAGLSS
Sbjct: 1   MNNNKRLPHTPSDTRHRIRELAYFCMIHESDLVCQQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMITMFLHVLVHDVKN------------------------------------- 147
           TEIVDVEEM+ MFLHVL HDVKN                                     
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 148 ------------------------------------------------------RYD--- 204
                                                                 RY    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

[Close]

BLAST of MELO3C032289.jh1 vs. NCBI nr
Match: KAA0045638.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (503), Expect = 2.76e-57
Identity = 126/294 (42.86%), Postives = 144/294 (48.98%), Query Frame = 0


Query: 28  LNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSS 87
           +N+NK LP TP DTRH+IR+LAYFR+IHE DLVC +STRMDR+TFAIL HLL  V GLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLINVVGLSS 60

Query: 88  TEIVDVEEMITMFLHVLVHDVKN------------------------------------- 147
           TEIVDVEEM+ MFLHVL HDVKN                                     
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 148 ------------------------------------------------------RYD--- 204
                                                                 RY    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

[Close]

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UCJ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00900 PE=3 SV=1)

HSP 1 Score: 225 bits (574), Expect = 5.07e-68
Identity = 145/356 (40.73%), Postives = 172/356 (48.31%), Query Frame = 0


Query: 1   MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV 60
           MDQQTLL VLTAFT+ QRQMLLTLE L+ND++ +  T +DTRH+I QLAYF +IHE DLV
Sbjct: 1   MDQQTLLVVLTAFTLVQRQMLLTLELLMNDSRRITHTSFDTRHRISQLAYFCVIHESDLV 60

Query: 61  CCESTRMDRQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHD------------- 120
           C +STRMDR+TFAIL HLL  ++GL S EIVDVE+M+  FLH+L HD             
Sbjct: 61  CRQSTRMDRRTFAILCHLLWTISGLLSIEIVDVEQMVATFLHILAHDELIKRPVPVTNNC 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 NDQRWKCFENCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGLCNMKGDFVYVLAGW 180

Query: 181 ----VKNR---------------------------------------------------- 204
               V +R                                                    
Sbjct: 181 KGFAVDSRILRDALARDNGLQVPKGYYYLCDAGYPNVEGFLDPYRGQREMAYCDDVGDVD 240

[Close]

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BB49 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001750 PE=3 SV=1)

HSP 1 Score: 216 bits (550), Expect = 2.24e-67
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV 60
           MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV
Sbjct: 1   MDQQTLLGVLTAFTMAQRQMLLTLEALLNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLV 60

Query: 61  CCESTRMDRQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNR 111
           CCESTRMD QTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNR
Sbjct: 61  CCESTRMDNQTFAILFHLLRIVAGLSSTEIVDVEEMITMFLHVLVHDVKNR 111

[Close]

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 4.14e-63
Identity = 133/334 (39.82%), Postives = 151/334 (45.21%), Query Frame = 0


Query: 28  LNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSS 87
           +ND++ +  TP DT H+IRQLAYFR IHE +LVCC+STRMDRQTF ILFHLLRIV+GLSS
Sbjct: 1   MNDSRRITHTPSDTHHRIRQLAYFRKIHESNLVCCQSTRMDRQTFTILFHLLRIVSGLSS 60

Query: 88  TEIVDVEEMITMFLHVLVHDVKNR------------------------------------ 147
           TEIVDVEEM+  FLHVL HDVKNR                                    
Sbjct: 61  TEIVDVEEMVATFLHVLAHDVKNRIIQREFVRSSETVSRYFNLILLAVVRIYEEFIERLI 120

Query: 148 ------------------------------------------------------------ 204
                                                                       
Sbjct: 121 SRTNNCNDQRWKCFENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFV 180

[Close]

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BWV2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00270 PE=3 SV=1)

HSP 1 Score: 200 bits (508), Expect = 2.43e-58
Identity = 127/294 (43.20%), Postives = 145/294 (49.32%), Query Frame = 0


Query: 28  LNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSS 87
           +N+NK LP TP DTRH+IR+LAYF +IHE DLVC +STRMDR+TFAIL HLLR VAGLSS
Sbjct: 1   MNNNKRLPHTPSDTRHRIRELAYFCMIHESDLVCQQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 88  TEIVDVEEMITMFLHVLVHDVKN------------------------------------- 147
           TEIVDVEEM+ MFLHVL HDVKN                                     
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 148 ------------------------------------------------------RYD--- 204
                                                                 RY    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

[Close]

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TS15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001490 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 1.34e-57
Identity = 126/294 (42.86%), Postives = 144/294 (48.98%), Query Frame = 0


Query: 28  LNDNKCLPQTPYDTRHKIRQLAYFRIIHEYDLVCCESTRMDRQTFAILFHLLRIVAGLSS 87
           +N+NK LP TP DTRH+IR+LAYFR+IHE DLVC +STRMDR+TFAIL HLL  V GLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLINVVGLSS 60

Query: 88  TEIVDVEEMITMFLHVLVHDVKN------------------------------------- 147
           TEIVDVEEM+ MFLHVL HDVKN                                     
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 148 ------------------------------------------------------RYD--- 204
                                                                 RY    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

The following BLAST results are available for this feature:

BLAST of MELO3C032289.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051365.1	1.05e-67	40.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065784.1	4.63e-67	99.10	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96523.1 retrotransposon p...	[more]
TYK04867.1	8.54e-63	39.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02619.1	5.02e-58	43.20	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045638.1	2.76e-57	42.86	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032289.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCJ1	5.07e-68	40.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BB49	2.24e-67	99.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BZA2	4.14e-63	39.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BWV2	2.43e-58	43.20	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TS15	1.34e-57	42.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C032289.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 124..203
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 124..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032289.jh1.t1	MELO3C032289.jh1.t1	mRNA