MELO3C032210 (gene) Melon (DHL92) v4

Overview
NameMELO3C032210
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description60S ribosomal protein L9-like
Locationchr06: 26810945 .. 26813663 (+)
RNA-Seq ExpressionMELO3C032210
SyntenyMELO3C032210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAGGGCAAAATCGGGTTTATGGAAACCCTAAAACTAGGGTTTCCATAACCCTAGTACCAAACGCGTGTAGGGTTACAATGCTAATCTGCCACCCAGGGGTCTCGTTTGGCCCCTGGTTTTGGAATCAAGTGCGTCTGGCCCACAGTCTAAATGTAAGGGATTAAGAAAAGGGGTAAATTATGGGGTTTCAACATTTTTACGAAATAAAAAAAGAAAAAAAATCTCTATCCTCTTAATTTCTTCCAGATCTCTCATCATCTCTCTCCCTATCTCTTCTTCACGTTCTCATTCAAACCCTAGCGTCTTCATCTCCTCTACGTCTCTTCATCTCCTCATTTAATTTCTCTTCTTTCGTCAAGAATCTTTCGACTGAGGTCTCTTTTTCTTTTTCTCATACAAAGAAGCAACAGTAAAAGGAAATCGAATCCCGTCGGAGAAAAGACAGATTTATTCACGGGTCTGTGCTATTTTAACATTTTTTTTTCTGTATTGCTTTGTTCCACTTTTTTTGTTTGTTCTATCTTTTCTATTCTGCATTTTGTTGTAAGGTTCTTTTTTCTGTATTTTTTCCTGTTTTGCATGCATTTCTTTGTTGTAAGGTTCTTTTTTTTTCTTTTCTGTAATGCATGCATTTCTTTGTTGGAAGGTTCTTTTTTTTTTGTGTTTTTTTTATGTAATTCAATAAGGTTCTCTTTTTTTTTTGTTTTTTTTTTCTGGAATTCAGTAAGGTTCTTTTTTCCTTTTTTTTCCTTCTATTCTGTATTGCAATATACACTTTTTGTTTTTTGTTTTTTTAATTTTTTATTACTTTTCTAAATAAATATATTAAAAATAAGAAAGTGATATACTATAACTCTCCATGGCAGTGTTTTGTATGTGTTAGATAATCTGATTCTCGCTTACTTTCTTATTATTACTGAAAAGTTTATTTCTTATAGAGAAAAGAAAAACAAGTTGGAATTGGAGTTACTATTTTTTTTAATTCATTTTTTTTAGTGCGGCATGCTTAGATGTTGTCCTTGGTTCAAATTTCATTGAGTAGTTTGCACTAGATAGGATATTTCCCATGCATTGTCGTGAATTTGTTATGAACCATGTTTCTTTGCCTTATTTTGCAGAAATGTCATGTCAAGAACAAGGATATATGGAAGTTCCTTGATGGTATCTATGTCAGCGAGAAGGGAACCATAGTTGGAGCAGATGAGTGATCAATACAATTGTAAGTTATATCTGCACTTTGTTTCAAGAGTTTGTTCTCTTTCGAAATTGTTCTTTTTTTCATGACTAATAGCTTAATTTTGTGATGTTTCTTTTTGTGTCCGCCCTTTGAAAATACATTACATTTTTGTTTTATGATAATTTTTAGTTAAGGCATAAAAACAATGCTCAGTAACCGATTTTTCACTTGATTTTTGCTTACGAATCTAATAATAATGATCTTAGGTTCTTCATGTGTGCATTGCATTAACATTATATTGATCGTGAATTTTTGATTGTACGAAGCTTAGATGCTCATTAACCATTTATTTTAAAACATCAAACTTCAATTTTTTATTACTCTTCTAAATTAAAGTTTGTAAATCATTTGCAATTGTGAAACATTTTGGTTATTTGTTTGTTTTAAAACATCGAGCTTTAATCTTTTTATTACTTTTCTAAATCAAAGTTTGTAAATCAAGTTTGTGTAGTCTTAGTGTTGATTAAGTTTTAAAATATTTTGGTTACCCTTGATTTGTTTATTTGGTAGTTGAGAAATTTAAATTTGATAAAATAAATTTGAGTGATTTGACGGTGTATAATTGTAGTTGAGAGAGATTTAAATTTATAAATCTTATTTTTATTTATATATGGGGTAGTTATATTTGTATTAAAAAAATTAATGTTTACTTTTGGTAGTTGAGACATTTAAATTTTGGAAATCTTAATTTTATTTTATTTGTATTTAATACATAGTACTTATTATTTTTTCATTTATTAATGGTAGTTGAGTGATTTGAAAGGAAAAATTTATTAGTTCAAACATCCATTTGTTTTAAATATAACACTTCTCCTTCATTTTTAAACACACAACCTCTTTGGTTTGTATCTAAAATTTACTTTCTTTGACGTTGAGGTCATAACATTCTCCCATATCTTTGAGTGGTACCTATTTTACATTTATTTTATATAGACTTTGTTTTATATATATTATTATCTTATTTTTTTTTCCTTATACTATTATTTTCCTTCTTTTTCATTGTTCTTTGATACTTTTTTTGGGTATGTATATTTTACTTTGTTAATGTGGACTTTTCTTTGTTTTTCAACTATCAAGAAGTAAGCTCAATTGTACTAGTTTCACTTATCTCATTTCATTGACTGTTTTATTTATTTATTTCTTTTGTAGGTTTGTCTTAGCCTTGCATAGACACACACCATTACGTAATATGCTCTTTTTTTTTCCTACATTTGTATATAAACTTTTGCGTTTTTAATTTCTTTGTTAGTACATTCATGTTTTGTATATTATGATTGTGTTATATTTGTCAAATTATTTGTTTTAACTTTTGAGAATACTTTGTGTGGAATTTAATTTGTAAGATTACTTTTTTCTTTTTTAAGTTAATTTATATTGTTCACTTGTAGTAATTAAACAGGAGGGCTACACATGTTTTTTTATAAAAAAAATACTCACTTGAAATCTTTGTTTGTGAATAACAATAATTCTGATTT

mRNA sequence

ATGGAGGGAGGGCAAAATCGGGTTTATGGAAACCCTAAAACTAGGGTTTCCATAACCCTAGTACCAAACGCGTGTAGGGTTACAATGCTAATCTGCCACCCAGGGGTCTCGTTTGGCCCCTGGTTTTGGAATCAAGTGCGTCTGGCCCACAATCTCTCATCATCTCTCTCCCTATCTCTTCTTCACGTTCTCATTCAAACCCTAGCGTCTTCATCTCCTCTACGTCTCTTCATCTCCTCATTTAATTTCTCTTCTTTCGTCAAGAATCTTTCGACTGAGAAATGTCATGTCAAGAACAAGGATATATGGAAGTTCCTTGATGGTATCTATGTCAGCGAGAAGGGAACCATAGTTGGAGCAGATGAGTGATCAATACAATTGTTTGTCTTAGCCTTGCATAGACACACACCATTACGTAATATGCTCTTTTTTTTTCCTACATTTGTATATAAACTTTTGCGTTTTTAATTTCTTTGTTAGTACATTCATGTTTTGTATATTATGATTGTGTTATATTTGTCAAATTATTTGTTTTAACTTTTGAGAATACTTTGTGTGGAATTTAATTTGTAAGATTACTTTTTTCTTTTTTAAGTTAATTTATATTGTTCACTTGTAGTAATTAAACAGGAGGGCTACACATGTTTTTTTATAAAAAAAATACTCACTTGAAATCTTTGTTTGTGAATAACAATAATTCTGATTT

Coding sequence (CDS)

ATGGAGGGAGGGCAAAATCGGGTTTATGGAAACCCTAAAACTAGGGTTTCCATAACCCTAGTACCAAACGCGTGTAGGGTTACAATGCTAATCTGCCACCCAGGGGTCTCGTTTGGCCCCTGGTTTTGGAATCAAGTGCGTCTGGCCCACAATCTCTCATCATCTCTCTCCCTATCTCTTCTTCACGTTCTCATTCAAACCCTAGCGTCTTCATCTCCTCTACGTCTCTTCATCTCCTCATTTAATTTCTCTTCTTTCGTCAAGAATCTTTCGACTGAGAAATGTCATGTCAAGAACAAGGATATATGGAAGTTCCTTGATGGTATCTATGTCAGCGAGAAGGGAACCATAGTTGGAGCAGATGAGTGA

Protein sequence

MEGGQNRVYGNPKTRVSITLVPNACRVTMLICHPGVSFGPWFWNQVRLAHNLSSSLSLSLLHVLIQTLASSSPLRLFISSFNFSSFVKNLSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE
Homology
[Close]
BLAST of MELO3C032210 vs. NCBI nr
Match: KAA0060669.1 (hypothetical protein E6C27_scaffold22G005640 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 94  KCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           KCHVKNKD+WKFLDGIYVSEKGTIVGADE
Sbjct: 86  KCHVKNKDMWKFLDGIYVSEKGTIVGADE 114

[Close]
BLAST of MELO3C032210 vs. NCBI nr
Match: XP_008462900.1 (PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >KAA0056651.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa] >TYK04612.1 60S ribosomal protein L9-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTIVGADE
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIVGADE 195

[Close]
BLAST of MELO3C032210 vs. NCBI nr
Match: XP_038897570.1 (60S ribosomal protein L9-like [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTIVG DE
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIVGGDE 195

[Close]
BLAST of MELO3C032210 vs. NCBI nr
Match: XP_004137145.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN53768.1 hypothetical protein Csa_014503 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTI+G DE
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIIGEDE 195

[Close]
BLAST of MELO3C032210 vs. NCBI nr
Match: XP_022968434.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTIVG +E
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIVGEEE 195

[Close]
BLAST of MELO3C032210 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 5.6e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTI 118
           L  +KCHVKNKDI KFLDGIYVS+KGTI
Sbjct: 159 LINQKCHVKNKDIRKFLDGIYVSDKGTI 186

[Close]
BLAST of MELO3C032210 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIV 119
           L  +KCHVK KDI KFLDGIYVSEKG +V
Sbjct: 162 LINQKCHVKKKDIRKFLDGIYVSEKGAVV 190

[Close]
BLAST of MELO3C032210 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.2e-05
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTI 118
           L  +KCHVK KDI KFLDGIYVSEKG I
Sbjct: 163 LINQKCHVKKKDIRKFLDGIYVSEKGKI 190

[Close]
BLAST of MELO3C032210 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 48.1 bits (113), Expect = 8.0e-05
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIV 119
           L  +KCHVK KDI KFLDGIYVSEK  IV
Sbjct: 163 LINQKCHVKKKDIRKFLDGIYVSEKSKIV 191

[Close]
BLAST of MELO3C032210 vs. ExPASy Swiss-Prot
Match: Q3SYR7 (60S ribosomal protein L9 OS=Bos taurus OX=9913 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 97  VKNKDIWKFLDGIYVSEKGTIVGADE 123
           VKNKDI KFLDGIYVSEKGT+  ADE
Sbjct: 167 VKNKDIRKFLDGIYVSEKGTVQQADE 192

[Close]
BLAST of MELO3C032210 vs. ExPASy TrEMBL
Match: A0A5A7V4K4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005640 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 94  KCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           KCHVKNKD+WKFLDGIYVSEKGTIVGADE
Sbjct: 86  KCHVKNKDMWKFLDGIYVSEKGTIVGADE 114

[Close]
BLAST of MELO3C032210 vs. ExPASy TrEMBL
Match: A0A1S3CHZ9 (60S ribosomal protein L9-like OS=Cucumis melo OX=3656 GN=LOC103501171 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTIVGADE
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIVGADE 195

[Close]
BLAST of MELO3C032210 vs. ExPASy TrEMBL
Match: A0A5D3C0B3 (60S ribosomal protein L9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00160 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTIVGADE
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIVGADE 195

[Close]
BLAST of MELO3C032210 vs. ExPASy TrEMBL
Match: A0A0A0KW25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124900 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTI+G DE
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIIGEDE 195

[Close]
BLAST of MELO3C032210 vs. ExPASy TrEMBL
Match: A0A6J1HZM6 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.9e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIVGADE 123
           L  +KCHVKNKDI KFLDGIYVSEKGTIVG +E
Sbjct: 163 LINQKCHVKNKDIRKFLDGIYVSEKGTIVGEEE 195

[Close]
BLAST of MELO3C032210 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 48.5 bits (114), Expect = 4.4e-06
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTI 118
           L  +KCHVK KDI KFLDGIYVSEKG I
Sbjct: 163 LINQKCHVKKKDIRKFLDGIYVSEKGKI 190

[Close]
BLAST of MELO3C032210 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIV 119
           L  +KCHVK KDI KFLDGIYVSEK  IV
Sbjct: 163 LINQKCHVKKKDIRKFLDGIYVSEKSKIV 191

[Close]
BLAST of MELO3C032210 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 0 

Query: 90  LSTEKCHVKNKDIWKFLDGIYVSEKGTIV 119
           L  +KCHVK KDI KFLDGIYVSEK  IV
Sbjct: 163 LINQKCHVKKKDIRKFLDGIYVSEKSKIV 191

The following BLAST results are available for this feature:
BLAST of MELO3C032210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060669.12.8e-0796.55hypothetical protein E6C27_scaffold22G005640 [Cucumis melo var. makuwa][more]
XP_008462900.11.8e-0687.88PREDICTED: 60S ribosomal protein L9-like [Cucumis melo] >XP_016902942.1 PREDICTE... [more]
XP_038897570.15.4e-0684.8560S ribosomal protein L9-like [Benincasa hispida][more]
XP_004137145.19.1e-0681.8260S ribosomal protein L9 [Cucumis sativus] >KGN53768.1 hypothetical protein Csa_... [more]
XP_022968434.12.0e-0581.8260S ribosomal protein L9-like [Cucurbita maxima][more]
BLAST of MELO3C032210 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P492105.6e-0682.1460S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S... [more]
P307071.6e-0575.8660S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1[more]
Q9SZX96.2e-0578.5760S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1[more]
P492098.0e-0575.8660S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3[more]
Q3SYR71.8e-0484.6260S ribosomal protein L9 OS=Bos taurus OX=9913 GN=RPL9 PE=2 SV=1[more]
BLAST of MELO3C032210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V4K41.4e-0796.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CHZ98.9e-0787.8860S ribosomal protein L9-like OS=Cucumis melo OX=3656 GN=LOC103501171 PE=3 SV=1[more]
A0A5D3C0B38.9e-0787.8860S ribosomal protein L9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A0A0KW254.4e-0681.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124900 PE=3 SV=1[more]
A0A6J1HZM69.9e-0681.8260S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111467681 PE=3 S... [more]
BLAST of MELO3C032210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10450.14.4e-0678.57Ribosomal protein L6 family [more]
AT1G33120.15.7e-0675.86Ribosomal protein L6 family [more]
AT1G33140.15.7e-0675.86Ribosomal protein L6 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 74..122
e-value: 1.5E-8
score: 36.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032210.1MELO3C032210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome