MELO3C032131 (gene) Melon (DHL92) v4

Overview
NameMELO3C032131
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein Ycf2-like
Locationchr06: 21573728 .. 21574364 (+)
RNA-Seq ExpressionMELO3C032131
SyntenyMELO3C032131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAGTACTTGAACTTTATGTTCAACATAAGTACTGCTGGCACCGATGATGATAGAATAAAAATGCTGTACTTTCTCAAGAGTTTTTTGATCCCTAGGCAAGAATGTCTAAGTATAGAGTGGATCACATCATTATGGTAGATGATGATGAACTATTTGATGGGTACCCATGTGGTAGAGTTACTTTTGAACTCTTAGTAGAGTTCATGAATAGGGTCATTTGTAGTAAGGGGCAAACAAGGATTTCGATGGGGGGGGGGGAGGGGATTTATTTTCCCCATTCTTGTTTGGGCTTATGAGGTAATCCCAACATTGAGTACCCTGCCTAACTTCTTTGCAACAAGGATTTCAAATGAAGTCCCTAGGATTATAAATTGAACAGCTGACACACAATCCAAATGGAAAGATTTAAAAGATAAGGTATTCGATTCGCCAATGGTATGTAAATCTTGTAATTTGTAGGAGTTTTGATATTCATAACAGTTTTAATATTTATAAAGTATTTTATTCCTTTTTGAAACAACTTGAAGTGTCCCCCATGCTCGCCACACCAATTGAAGTGAGAATGCCATACTTTGCACCATTCCTTGAGACAGAAAAAGATATACTCAAAGAAGCAGAAGATGAGCTTTGA

mRNA sequence

ATGAGGCAGTACTTGAACTTTATGTTCAACATAAGTACTGCTGGCACCGATGATGATAGAATAAAAATGCTGTACTTTCTCAAGAGTTTTTTGATCCCTAGGCAAGAATGTCTAAGTATAGAGTGGATCACATCATTATGGTAGATGATGATGAACTATTTGATGGGTACCCATGTGGTAGAGTTACTTTTGAACTCTTAGTAGAGTTCATGAATAGGGTCATTTGTATGTCCCCCATGCTCGCCACACCAATTGAAGTGAGAATGCCATACTTTGCACCATTCCTTGAGACAGAAAAAGATATACTCAAAGAAGCAGAAGATGAGCTTTGA

Coding sequence (CDS)

ATGTCTAAGTATAGAGTGGATCACATCATTATGGTAGATGATGATGAACTATTTGATGGGTACCCATGTGGTAGAGTTACTTTTGAACTCTTAGTAGAGTTCATGAATAGGGTCATTTGTATGTCCCCCATGCTCGCCACACCAATTGAAGTGAGAATGCCATACTTTGCACCATTCCTTGAGACAGAAAAAGATATACTCAAAGAAGCAGAAGATGAGCTTTGA

Protein sequence

MSKYRVDHIIMVDDDELFDGYPCGRVTFELLVEFMNRVICMSPMLATPIEVRMPYFAPFLETEKDILKEAEDEL
Homology
BLAST of MELO3C032131 vs. NCBI nr
Match: TYK13893.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC-----------MSPMLATPIEVRMPY 66
           DHIIMVDDDE+FDGYP GRV FELLV+FMNR +C           +SPM ATP EV +P+
Sbjct: 258 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTFLWGLEVSPMFATPDEVGIPF 317

Query: 67  FAPFLETEKDILKEAEDEL 75
           F PF+ETEKDILKEAEDEL
Sbjct: 318 FVPFIETEKDILKEAEDEL 336

BLAST of MELO3C032131 vs. NCBI nr
Match: KAA0037180.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC-----------MSPMLATPIEVRMPY 66
           DHIIMVDDDE+FDGYP GRV FELLV+FMNR +C           +SPM ATP EV +P+
Sbjct: 258 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTFLWGLEVSPMFATPDEVGIPF 317

Query: 67  FAPFLETEKDILKEAEDEL 75
           F PF+ETEKDILKEAEDEL
Sbjct: 318 FVPFIETEKDILKEAEDEL 336

BLAST of MELO3C032131 vs. NCBI nr
Match: KAA0050355.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVICMSPMLATPIEVRMPYFAPFLETEKDI 66
           D+I+MVDDDELFDGY  GRV FELLVEFMNR + +SPMLATP EV M YFAPFLE EKDI
Sbjct: 90  DYILMVDDDELFDGYAWGRVAFELLVEFMNRALEVSPMLATPNEVGMSYFAPFLEAEKDI 149

Query: 67  LKEAEDEL 75
           LKE EDEL
Sbjct: 150 LKEVEDEL 157

BLAST of MELO3C032131 vs. NCBI nr
Match: KAA0040869.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 8.8e-20
Identity = 56/92 (60.87%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC------------------------MS 66
           DHIIMVDDDE+FDGYP GRV FELLV+FMNR +C                        +S
Sbjct: 107 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGFIFPILAWAYELEVS 166

Query: 67  PMLATPIEVRMPYFAPFLETEKDILKEAEDEL 75
           PMLATP EV M +FAPF+ETEKDILKEAEDEL
Sbjct: 167 PMLATPDEVGMQFFAPFIETEKDILKEAEDEL 198

BLAST of MELO3C032131 vs. NCBI nr
Match: KAA0067175.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC---------------MSPMLATPIEV 66
           DHIIMVDDDE+FDGYP GRVTFELLV+FMN+V+                +S MLATP EV
Sbjct: 231 DHIIMVDDDEVFDGYPWGRVTFELLVDFMNKVVYSKGQTVFSSFLKQLEVSLMLATPDEV 290

Query: 67  RMPYFAPFLETEKDILKEAEDEL 75
            MP+FAPF+ETEKDILKE EDEL
Sbjct: 291 GMPFFAPFIETEKDILKETEDEL 313

BLAST of MELO3C032131 vs. ExPASy TrEMBL
Match: A0A5D3CPV6 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00820 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC-----------MSPMLATPIEVRMPY 66
           DHIIMVDDDE+FDGYP GRV FELLV+FMNR +C           +SPM ATP EV +P+
Sbjct: 258 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTFLWGLEVSPMFATPDEVGIPF 317

Query: 67  FAPFLETEKDILKEAEDEL 75
           F PF+ETEKDILKEAEDEL
Sbjct: 318 FVPFIETEKDILKEAEDEL 336

BLAST of MELO3C032131 vs. ExPASy TrEMBL
Match: A0A5A7T1D9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00930 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC-----------MSPMLATPIEVRMPY 66
           DHIIMVDDDE+FDGYP GRV FELLV+FMNR +C           +SPM ATP EV +P+
Sbjct: 258 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTFLWGLEVSPMFATPDEVGIPF 317

Query: 67  FAPFLETEKDILKEAEDEL 75
           F PF+ETEKDILKEAEDEL
Sbjct: 318 FVPFIETEKDILKEAEDEL 336

BLAST of MELO3C032131 vs. ExPASy TrEMBL
Match: A0A5A7U9S5 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00860 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVICMSPMLATPIEVRMPYFAPFLETEKDI 66
           D+I+MVDDDELFDGY  GRV FELLVEFMNR + +SPMLATP EV M YFAPFLE EKDI
Sbjct: 90  DYILMVDDDELFDGYAWGRVAFELLVEFMNRALEVSPMLATPNEVGMSYFAPFLEAEKDI 149

Query: 67  LKEAEDEL 75
           LKE EDEL
Sbjct: 150 LKEVEDEL 157

BLAST of MELO3C032131 vs. ExPASy TrEMBL
Match: A0A5A7THT9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00190 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 56/92 (60.87%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 7   DHIIMVDDDELFDGYPCGRVTFELLVEFMNRVIC------------------------MS 66
           DHIIMVDDDE+FDGYP GRV FELLV+FMNR +C                        +S
Sbjct: 107 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGFIFPILAWAYELEVS 166

Query: 67  PMLATPIEVRMPYFAPFLETEKDILKEAEDEL 75
           PMLATP EV M +FAPF+ETEKDILKEAEDEL
Sbjct: 167 PMLATPDEVGMQFFAPFIETEKDILKEAEDEL 198

BLAST of MELO3C032131 vs. ExPASy TrEMBL
Match: A0A5D3BRJ0 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00450 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 11 MVDDDELFDGYPCGRVTFELLVEFMNRVIC-----MSPMLATPIEVRMPYFAPFLETEKD 70
          MVDDDE+FDGYP GRV FELLV+FMNR IC     +SP+LATP EV MP+F PF+ETEKD
Sbjct: 1  MVDDDEVFDGYPWGRVAFELLVDFMNRAICSKMQTVSPILATPDEVGMPFFTPFIETEKD 60

Query: 71 ILKEAEDEL 75
          ILKEAEDEL
Sbjct: 61 ILKEAEDEL 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK13893.18.0e-2168.35protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0037180.18.0e-2168.35protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0050355.11.0e-2079.41protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0040869.18.8e-2060.87protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0067175.11.5e-1966.27protein Ycf2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CPV63.9e-2168.35Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00... [more]
A0A5A7T1D93.9e-2168.35Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00... [more]
A0A5A7U9S55.0e-2179.41Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G008... [more]
A0A5A7THT94.3e-2060.87Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00... [more]
A0A5D3BRJ07.3e-2075.36Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032131.1MELO3C032131.1mRNA