MELO3C032056.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032056.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 16253252 .. 16258591 (-)
RNA-Seq ExpressionMELO3C032056.jh1
SyntenyMELO3C032056.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTTTGCGAAGCGCACACCACCCGCGATCGCAGCCGACCCGAATTCCCGACCCGCGCCCCTTCAGCCGCCAATCCTCGCAGATCGAAAGTCGACCTGCGTCTCTCAAGCCGCACTCTATTTCTTCCGCGTGTCGCCTCCATCCATCGTGCTCCAGCTAAACGCAGCCATCGTGAAGTTCCACCGGTCACCGCTGTCTCTGCCGCCTACCCTGCCGGTCGTCCCAAGCGAATCGTCCGTCGGACCCGTGCCTCCAACCACTCGAATCTGGAAACCCATGCACCGTGCCTCGTTCACGCGTGAATCTGACCCGACTGTGCCTCCAGCTCCGTGACCCGAGCCGCATCCATTCGCGTTGAGCCACACGCGCACAGCGCCTGTACCGCTAGCCGAGCCGCGCCTGCGTCCGAGTCGAGCTGTGTCGTGCCTCCTTCCTTCCAGTCGAGCCGCCAAGCCCTTTTGAGCCACCTAGCATTTTTCGATCCTTTCCCCACCTATCGTTGGTAAGTTTTTGGTAATTTTGTTGGGTTTTTGGCATACTCAACGAAGAGTAATTTTGGTTTTTTAAATAATTTAATTTTGGATTAAATTAAATTATCTTTCTGAAAGGGTCGGTTGGACCAATTGGAGTTTGGAGCGTGGGATTTCTCGAGTTAAAGGAATTTATTGCAACCTTGATCTTCGGTAAGTTGCTTCAAATAATTCTTGGACTTTGTCCCGTGAAGGTTAGGTTATTAATTGTTGTTCCTAACCATCTAGGACTCGTGACTTGGGAAGCGTGTGATTTTACTGTTAGAATTCGACTGAGCAAATCTACAGGTAAGAGATTTCTACTACTAGCTCTACGACTAGAATCATGAGACTGCATGCATTCCTAGTTATGCACGTTGAGGATTAAACTGTAGAACGATATGTCAATTAATGAGGGCATGATGTGACTGATGATGTGATTTGATATGATGGCATGGTTTAATGTGATGACGTGGCTTGTTATGACCTTATGTTTGGACATTGTGATGAGATGTGATATGATGATTAGCCGTGATATGATTACGTTATGATGCTATGCTATATGTATGATGTGGTTAAGGTGCATGTTAGCTTACCCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATGACCACCTATTTAAGACTGTGTAGTCGACGCGACCGCCAGTCTAGCATTGATATAGAGATGATTCGAGCGATTCGACGGGATCCTCGCAGCCCGATTATCTTAGGGCTTCCTCCAGATACGCTACAGACTAGATTGTCCTAGGTGTTCCTTCGGGTCACCGAAGACCAGATTTTGTTCCTACGGGACATGTTGCACGTGTTCGGGAACATGCCAGTTCTTGGGTACCATTTTCAGAACTCTAATAGGAAGTTAACAGACACCTAGTGAGACTAGTAGTGGGTCCCTTACTGAGTATTTTATACTCACTATTTCCATTTCATGTTTTTCAGGTAGAGGCAGAGGTAAGGGCAAGGGCAAACTAGCGAGCGACCAGAAGTGACCGTGGCAAGCCATAGGGATCTCTGCTTTCGCTTTACCCCCCCAATTTAAACTTTTAGTATTTGAATTTTTATTATTCTTTATTTATTATTTCGTTTCTTTAAAAGTAGATAGGGCTCGAGTAAGATTTTAATATTTGTTTACATTTTGCACATTACCCTGATTTGGTTCTTAAATAAATAAAATTTTGAGGTTTGTTCGTTTTAGCCAAACTTTATAACTTTGTTTCTGTCATTTACATTTAGTAATGGCTTCGAATTAGTATAAGGAGTTGGGCTGTTACAATTACGTTTCCTAATAAGTTTCCAATTCTCTTAGTATTTACGTTACCTAATAAGTTTACGACTAGCTCATTTTCAAGTCCTCCATATACCAAGAATGCATCTTTAGTTCTTCTCAAGTACTTAAGGATATTTTTCATTGTTGTCCATTGTGTTTCACCTAGATCTGATTGATATCTACTAGTTAAACTCAACATGCATGATACATCTGGTCAAGTACATAACATGCCATACATGATGTAACCCATAGCCGAAGCATATAGAATCGTTTGCATTCTTCCCCGCTAATCTTGTGTCTTTGGATACTGATTCTTGTAGAGACATATGCCTTGTTCTATTCACAAGAATCCTCTCTTAGAATTATGCATACTAAACCTTTTTAGTATTTTTTTAATATAAGCAATTTGACTTAGGCCTAAAATTCTTTTAGATCTATCTCTATAGATCTTGATGCCTAAAATATAAGTATCCTCACCCAAGTCTTTCATCGAAAGACATTTACCTAACCAAAAATCAATAGTCTGCAAGGTAGGTACATCATTTCCAATAACCAATATATCATGGATGTAAAGCACGAGTAAAACAATTATGCTTCCACTGACTTTCTTGTTAACACAAGGCTCATCTTTAATTTTTATAAACCCAAACTCTTGGACTGTGTCATCAAAACAAAGATTCCAGCTCCTTGAAGCTTGTTTCAATCCATAAATAGATCTTTGAAGTTTTCACACTTTATTAGCATTTTGTGGGTCGAAAAAACCCTTAGGTTGTGCTATGTACACATCCTCCATGAGATTTTTGTTAAGAAATGATATTTTGACATCCATTTATCATATTTCATAATCATAATATGCAATAATGGCAAGAAGAATTCTAATAGACTTAAGCATTGCGATCAGTGAAAAAGTGTCATCCTAGTCCACAAGTTTTTCGAAAACCCTTCACAATCAAACATGCTTTGTAAGTGTGCACATTTCCATCCATGTTAGTTTTCTTCTTGAAAACCCATTTACATCTGATGGTTTTTATACGTTCAAATGCATCAATTAAGAACCATACTTGATTATTATACATGGATTACAATTCAAACTTCATGGCTTCAAGCAACTTTTCTAAATCTGAACTCGTCATGGCCTTTTGACATGATGTGGGTTGATCATCATGAATAATCACCATGTCATTATTAGATGTCATGAGAAATTCATATCTTTGAGGTTCATGACAAGATCTAATAGATCTTTGAATCTATTGTGTTATTGATTCTGGTATCGGTTCCGGCTCCTGTTCATTCATGGCATTTGATTTTGAGATTGATTTAACTTCTTCAAGAATCTCACTCGGTTCAGCGTTTATTTGCAAGTTTTAAATTTCTTCAAGTTGAACTTTACTCCCACTAGCTCTCTTGGAAATAAATTATCTTTCCAAGAAAGTGTCATTTCGAGCAACAAACACTTTGCTTTCAGAAGGGAGATAAAAGTAATATCCTTTAGTCTCCTTAGAATATCCCACAATACACATTTTTAGATTTGGATGCTAGCTTATTAGAAATATGACACTTCACATAAGCTTTACAAACCCAAGTCTTCATAAAGAAAATCTAGGACAGCTCACAACTTATAGCTCGTATATGGTATCTTTTAAATCGATTTTGTCAGATTTTGGTTTAGTATAAACACTGCAATCTTTAATGCATAACCCTGAAATAAAATTGGAAGGACCACTTGACTTATCTTAAATCGAATCATATCTAATAAAGTTTAATTATTTTTTTCAGGTACACCATTCCACTGCAGCGTACACGGTGGAGTCAATAGTGATACAATTCCACATTCTCTAAGATAGTCAATGAATTATTGACTTAAATACTCACCTCCTTGATCAGATCAAAGTTTTTTAATAATCTTGCATAGTTGATTTTGTACTTCACTCTTGAAAGTTTAAAGCAATTCAAAAGTTTCAGATTTATGTTTCATTAAGTAAACATAACCAAATCTACTGAAATCATTAGTAAACGTGACAAAGTAATATTAACCTCCTCTAGTAGGTGAGCTGATTGGTCCACATACCTGACTATGTATAAGACTTAACAACTCAGTGGTCCTTTTACCCTTTCGAGAAAAAAGACTCTTTGTCATTTTCTCTAACAAACACGATTCACAGAGTTCAAATGATTCAAAATAAAAAAGAATCTAAAAGTCCATCCTTATGAAGCCTAGGAATGTGTTTCTCGTTTACCTGTCCCAAACGACAATGCTAGAAGTAGGTTGGATTCAAATCATTTGATTTAAATTTCTCAGTATTAATGTTATAGATAGACTTGTAATTAGATGATTCAATATACGGAATATAAAGATCATTCATGAAACAACCATTGTCATAAAAGATGTCTTCTCTGAACATATAGAAAGGATGTTATTCTCAATAACAAACCTAAAACCATCCAAATCCAAACATGAAATTCAAATAATGTATTTGCTCTTAGCAGATACAAAATAACAATTATTTAGTTCTAAAACAAGTCTAAAAGGTAAAGTTAGATCATAAGTCCCAACAACTAATGCACCAACTCTTGTTCCTTTCCCGACTCATAGATACACTTAACCTTTAGCCAATGTCCTACTGCTTCTTAGACCTTGTATATTTCCACAAATGTAAGCACCAAATCTGGTATCTAATACCCAAGATGTAGGATTAGAAGTAGATAAATTGACTTCTATAACAAAGATACTTGAAGTCGAAGGGACAATTTCTTGGGTGGCTTAGGCTCTTTTGGTTTGGGTCTTGACTTTTAGTTCTTTAGTTCTACTAGTTAAAGTGGATAGTTCCTCTTTTAATGCCTAATTTCCTTACAATGATAACACTCTTCTTCCTTGGGTGGCTTAGGCTCTTTTGGTTTGGGTCTTAACCTAGGTACAACAAAAGCATCAACTTTTGATGTCTTGATAGCAACTTTGACATTACCCTTTCCTTGATCATGTCCCCTCTTCTTGAGATTCTTCCCTTTTTGCACCATCAAAACCTCAAAACTAGACTTGATGTTTAATGCAGCAGTTTTCAGCATCCCATGCAACTCAATAAAACTCTTCTTCATCCATGGATATTGGAACTCATCAGAAATTGATCAAAAGTATTAGGCAGGAATTAGAGAACAATAACAATTGCAAGCTTGTGACTAATGTCAAGTCCTAGCCTTTTTAGTTGCTCAAGATAACTCTTCATTTTTAGAACATGAGGGCTAACTAGACTATTCTTAGCCAGCTTGTAGTTGAAAAAAGCTTTGATGGTGTTGAACCTCTCTTGTCTTGCTTTTGAAACATTGCTTTCAGTTGACCATTGATTGTGAAGGCATCTATTTCCTCGAATTGCTTCTAATGCTCCGAGTTCATCCATGCAAGCACGAGGTAGGTGGCATCAGTGCAGTCATTGTAATGCTTACTATAAGCATCCTTCTAAGCCTTAGTTCGTTGCTACTGCCTCAGGTTCCTCATCAGGGAGAGCCTCATCCAGGACATACAACTTTCTTTCCTATTTGA

mRNA sequence

ATGAAGGTTTGCGAAGCGCACACCACCCGCGATCGCAGCCGACCCGAATTCCCGACCCGCGCCCCTTCAGCCGCCAATCCTCGCAGATCGAAAGTCGACCTGCGTCTCTCAAGCCGCACTCTATTTCTTCCGCGTGTCGCCTCCATCCATCGTGCTCCAGCTAAACGCAGCCATCGTGAAGTTCCACCGGTCACCGCTGTCTCTGCCGCCTACCCTGCCGGTCGTCCCAAGCGAATCGTCCGTCGGACCCGTGCCTCCAACCACTCGAATCTGGAAACCCATGCACCGTGCCTCGTTCACGCGTGAATCTGACCCGACTGTGCCTCCAGCTCCGTGACCCGAGCCGCATCCATTCGCGTTGAGCCACACGCGCACAGCGCCTGTACCGCTAGCCGAGCCGCGCCTGCGTCCGAGTCGAGCTGTGTCGTGCCTCCTTCCTTCCAGTCGAGCCGCCAAGCCCTTTTGAGCCACCTAGCATTTTTCGATCCTTTCCCCACCTATCGGTCGGTTGGACCAATTGGAGTTTGGAGCGTGGGATTTCTCGAGTTAAAGGAATTTATTGCAACCTTGATCTTCGGACTCGTGACTTGGGAAGCGTGTGATTTTACTGTTAGAATTCGACTGAGCAAATCTACAGGTAAGAGATTTCTAGTACACCATTCCACTGCAGCGTACACGGTGGAGTCAATATTGACCATTGATTGTGAAGGCATCTATTTCCTCGAATTGCTTCTAATGCTCCGAGTTCATCCATGCAAGCACGAGGTAGGTGGCATCAGTGCAGTCATTGTAATGCTTACTATAAGCATCCTTCTAAGCCTTAGTTCGTTGCTACTGCCTCAGGTTCCTCATCAGGGAGAGCCTCATCCAGGACATACAACTTTCTTTCCTATTTGA

Coding sequence (CDS)

ATGAAGGTTTGCGAAGCGCACACCACCCGCGATCGCAGCCGACCCGAATTCCCGACCCGCGCCCCTTCAGCCGCCAATCCTCGCAGATCGAAAGTCGACCTGCGTCTCTCAAGCCGCACTCTATTTCTTCCGCGTGTCGCCTCCATCCATCGTGCTCCAGCTAAACGCAGCCATCGTGAAGTTCCACCGGTCACCGCTGTCTCTGCCGCCTACCCTGCCGGTCGTCCCAAGCGAATCGTCCGTCGGACCCGTGCCTCCAACCACTCGAATCTGGAAACCCATGCACCGTGCCTCGTTCACGCGTGA

Protein sequence

MKVCEAHTTRDRSRPEFPTRAPSAANPRRSKVDLRLSSRTLFLPRVASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLETHAPCLVHA
Homology
[Close]
BLAST of MELO3C032056.jh1 vs. NCBI nr
Match: KAA0056808.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.27e-09
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 47  ASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLETHAP 96
           ASI  AP KR HREV  V AV  AYPA RP+RI+RRTRAS+H NL+T AP
Sbjct: 58  ASIRCAPTKRRHREVLSVAAVFVAYPADRPERIIRRTRASSHLNLKTPAP 107

[Close]
BLAST of MELO3C032056.jh1 vs. NCBI nr
Match: TYJ99930.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.27e-09
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 47  ASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLETHAP 96
           ASI  AP KR HREV  V AV  AYPA RP+RI+RRTRAS+H NL+T AP
Sbjct: 58  ASIRCAPTKRRHREVLSVAAVFVAYPADRPERIIRRTRASSHLNLKTPAP 107

[Close]
BLAST of MELO3C032056.jh1 vs. NCBI nr
Match: TYK00158.1 (hypothetical protein E5676_scaffold2510G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 9.33e-06
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 36  LSSRTLFLPRVASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLET 93
           L + + FL R ASI R PAK SHRE P V AV   YPA RP+   RRTR ++  N +T
Sbjct: 76  LQAASRFLSRAASIRRTPAKCSHREAPLVAAVFVVYPADRPELTGRRTRTASRPNPKT 133

[Close]
BLAST of MELO3C032056.jh1 vs. NCBI nr
Match: KAA0053182.1 (hypothetical protein E6C27_scaffold1192G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 9.52e-06
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 36  LSSRTLFLPRVASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLET 93
           L + + FL R ASI R PAK SHRE P V AV   YPA RP+   RRTR ++  N +T
Sbjct: 76  LQAASRFLSRAASIRRTPAKCSHREAPLVAAVFVVYPADRPELTGRRTRTASRPNPKT 133

[Close]
BLAST of MELO3C032056.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BJD4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00600 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.10e-09
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 47  ASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLETHAP 96
           ASI  AP KR HREV  V AV  AYPA RP+RI+RRTRAS+H NL+T AP
Sbjct: 58  ASIRCAPTKRRHREVLSVAAVFVAYPADRPERIIRRTRASSHLNLKTPAP 107

[Close]
BLAST of MELO3C032056.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UNY7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G001100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.10e-09
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 47  ASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLETHAP 96
           ASI  AP KR HREV  V AV  AYPA RP+RI+RRTRAS+H NL+T AP
Sbjct: 58  ASIRCAPTKRRHREVLSVAAVFVAYPADRPERIIRRTRASSHLNLKTPAP 107

[Close]
BLAST of MELO3C032056.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BM16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00500 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.52e-06
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 36  LSSRTLFLPRVASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLET 93
           L + + FL R ASI R PAK SHRE P V AV   YPA RP+   RRTR ++  N +T
Sbjct: 76  LQAASRFLSRAASIRRTPAKCSHREAPLVAAVFVVYPADRPELTGRRTRTASRPNPKT 133

[Close]
BLAST of MELO3C032056.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UBS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00030 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.61e-06
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 36  LSSRTLFLPRVASIHRAPAKRSHREVPPVTAVSAAYPAGRPKRIVRRTRASNHSNLET 93
           L + + FL R ASI R PAK SHRE P V AV   YPA RP+   RRTR ++  N +T
Sbjct: 76  LQAASRFLSRAASIRRTPAKCSHREAPLVAAVFVVYPADRPELTGRRTRTASRPNPKT 133

The following BLAST results are available for this feature:
BLAST of MELO3C032056.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056808.12.27e-0968.00ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ99930.12.27e-0968.00ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK00158.19.33e-0651.72hypothetical protein E5676_scaffold2510G00500 [Cucumis melo var. makuwa][more]
KAA0053182.19.52e-0651.72hypothetical protein E6C27_scaffold1192G00030 [Cucumis melo var. makuwa][more]
BLAST of MELO3C032056.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032056.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BJD41.10e-0968.00Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UNY71.10e-0968.00Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BM164.52e-0651.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UBS44.61e-0651.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C032056.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032056.jh1.t1MELO3C032056.jh1.t1mRNA