Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTTTGTATTTACTTATTCAATTTTTGTTTTCTATGTCCACATGCATTATGTCGTCGTCATATCCACGTCATAATTTTTTGGAGACGGATACTATGTTCCTCGAGTTAGATAACTTTGCGGGAGGGTCGTCGTCAGTCGACGACAATGTGGGTGAGTATAATAGTTTCTTTCATTTTAACTTACGATTATTTCATTTTTTTCTCCAACACTATATGTTATTATCGATTTATTGAGCAGGATCGTCTTTTCAACAACCTAGGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAGTACATGGACGCATTCCGATGACGATCGCCCCTGGTACGAAGAAACCTATTTCTCCACACGCCGTTCGCTTCAACCAAGCGATAGGCGTGCGCGAGTGAAAGACATTTTCCGTCTGCTGCCTTAAGTGGACGGACGCGGATGGACGTTGGCAGAGAATACATTGAAGGTTGTCAAGGGCAACCTCCAGGTAATTAAGTCCACTACACATTCATGATTTCATTTGAAACATATTTAAGTTAAGCAATCTAATGTGTTATTTTTGTAATGTGTAGCGATTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTCTAAAAAGTTTTGGGCCTACTGTCACAAACACTTTAAAAAGTACAGCGACCCCGAGGAGGCTCATGCCAACCTACCAAACATATTGGTTGGACGTTATGAGGATTGA
mRNA sequence
GTGTTTGTATTTACTTATTCAATTTTTGTTTTCTATGTCCACATGCATTATGTCGTCGTCATATCCACGTCATAATTTTTTGGAGACGGATACTATGTTCCTCGAGTTAGATAACTTTGCGGGAGGGTCGTCGTCAGTCGACGACAATGTGGGATCGTCTTTTCAACAACCTAGGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAGTACATGGACGCATTCCGATGACGATCGCCCCTGTGGACGGACGCGGATGGACGTTGGCAGAGAATACATTGAAGGTTGTCAAGGGCAACCTCCAGCGATTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTCTAAAAAGTTTTGGGCCTACTGTCACAAACACTTTAAAAAGTACAGCGACCCCGAGGAGGCTCATGCCAACCTACCAAACATATTGGTTGGACGTTATGAGGATTGA
Coding sequence (CDS)
ATGTCCACATGCATTATGTCGTCGTCATATCCACGTCATAATTTTTTGGAGACGGATACTATGTTCCTCGAGTTAGATAACTTTGCGGGAGGGTCGTCGTCAGTCGACGACAATGTGGGATCGTCTTTTCAACAACCTAGGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAGTACATGGACGCATTCCGATGACGATCGCCCCTGTGGACGGACGCGGATGGACGTTGGCAGAGAATACATTGAAGGTTGTCAAGGGCAACCTCCAGCGATTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTCTAAAAAGTTTTGGGCCTACTGTCACAAACACTTTAAAAAGTACAGCGACCCCGAGGAGGCTCATGCCAACCTACCAAACATATTGGTTGGACGTTATGAGGATTGA
Protein sequence
MSTCIMSSSYPRHNFLETDTMFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED
Homology
BLAST of MELO3C032027.jh1 vs. NCBI nr
Match:
KAA0060720.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK01463.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 285 bits (728), Expect = 1.39e-96
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 21 MFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVD 80
MFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVD
Sbjct: 1 MFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVD 60
Query: 81 GRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDP 140
GRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDP
Sbjct: 61 GRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDP 120
Query: 141 EEAHANLPNILVGRYED 157
EEAHANLPNILVGRYED
Sbjct: 121 EEAHANLPNILVGRYED 137
BLAST of MELO3C032027.jh1 vs. NCBI nr
Match:
KAA0038905.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 199 bits (507), Expect = 2.61e-62
Identity = 109/152 (71.71%), Postives = 119/152 (78.29%), Query Frame = 0
Query: 16 LETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGR 75
+ETD MFL+ LDN AGGSSSV DN GSS QQ T TPRRRAQSRLLELERHVA++GR
Sbjct: 1 METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TSTPRRRAQSRLLELERHVAINGR 60
Query: 76 IPMTIAP-----VDGRGWT-LAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKK 135
IPMTIAP + WT + ++VVKG+LQRFFVLDFNDQAMNRFVEHQMLTT K+
Sbjct: 61 IPMTIAPGAEKPISPHAWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKE 120
Query: 136 FWAYCHKHFKKYSDPEEAHANLPNILVGRYED 157
F A CHKHFKKYSDPEEA AN PN LVGR ED
Sbjct: 121 FRADCHKHFKKYSDPEEARANPPNALVGRDED 151
BLAST of MELO3C032027.jh1 vs. NCBI nr
Match:
TYJ99698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 200 bits (508), Expect = 1.43e-60
Identity = 113/187 (60.43%), Postives = 125/187 (66.84%), Query Frame = 0
Query: 2 STCIMSSSYPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQS 61
S ++ SY R +F+ETD MFL+ LDN AGGSSSV DN S Q TPTPRRRAQS
Sbjct: 88 SATLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQS 147
Query: 62 RLLELERHVAVHGRIPMTIAP--------------------------VDGRGWT-LAENT 121
RLLELERHVA++GRIPMTIAP V WT +
Sbjct: 148 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREY 207
Query: 122 LKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNI 157
++VVKG+LQRFFVLDFNDQAMNRFVEHQMLTT K+F A CHKHFKKYSDPEEA AN PN
Sbjct: 208 IEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNA 267
BLAST of MELO3C032027.jh1 vs. NCBI nr
Match:
KAA0041610.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK19647.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 199 bits (506), Expect = 4.36e-60
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 0
Query: 1 MSTCIMSSSYPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQ 60
M+TCIMSSSYP HNFLE DTMFLE LDN GGSS SS QQP TPTPRR Q
Sbjct: 104 MNTCIMSSSYPCHNFLEIDTMFLEFQDELDNLTGGSSWWV--TISSSQQPMTPTPRRYVQ 163
Query: 61 SRLLELERHVAVHGRIPMTIAPVDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVE 120
S+LLELERH+AVHGRIPMTIA GR + ++VVK +LQRFFVL+FNDQAMNRFVE
Sbjct: 164 SQLLELERHIAVHGRIPMTIASEVGREY------IEVVKDDLQRFFVLNFNDQAMNRFVE 223
Query: 121 HQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNIL 151
HQ+LTT K+FW CH+HFKKYS+PEEA N PNIL
Sbjct: 224 HQILTTFKEFWVDCHRHFKKYSEPEEARGNPPNIL 250
BLAST of MELO3C032027.jh1 vs. NCBI nr
Match:
KAA0062622.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 191 bits (484), Expect = 3.22e-59
Identity = 102/151 (67.55%), Postives = 115/151 (76.16%), Query Frame = 0
Query: 16 LETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGR 75
+ETD MFL+ LDN AGGSSSV DN GSS QQ TPTPR+RAQSRLLELERHV ++GR
Sbjct: 1 METDDMFLQFEDDLDNIAGGSSSVGDNTGSSSQQT-TPTPRKRAQSRLLELERHVTINGR 60
Query: 76 IPMTIAP-----VDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKF 135
IPMTIAP + + ++VVKG+LQR FV+DFNDQAMNRFVEHQMLTT K+F
Sbjct: 61 IPMTIAPGTEKPISPHWADIGREYIEVVKGDLQRLFVIDFNDQAMNRFVEHQMLTTFKEF 120
Query: 136 WAYCHKHFKKYSDPEEAHANLPNILVGRYED 157
CH+HFKKYSDPEEA AN PN LVGR ED
Sbjct: 121 RTDCHRHFKKYSDPEEARANPPNALVGRDED 150
BLAST of MELO3C032027.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7V073 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00060 PE=4 SV=1)
HSP 1 Score: 285 bits (728), Expect = 6.73e-97
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 21 MFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVD 80
MFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVD
Sbjct: 1 MFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVD 60
Query: 81 GRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDP 140
GRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDP
Sbjct: 61 GRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDP 120
Query: 141 EEAHANLPNILVGRYED 157
EEAHANLPNILVGRYED
Sbjct: 121 EEAHANLPNILVGRYED 137
BLAST of MELO3C032027.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TBZ0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00730 PE=4 SV=1)
HSP 1 Score: 199 bits (507), Expect = 1.26e-62
Identity = 109/152 (71.71%), Postives = 119/152 (78.29%), Query Frame = 0
Query: 16 LETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGR 75
+ETD MFL+ LDN AGGSSSV DN GSS QQ T TPRRRAQSRLLELERHVA++GR
Sbjct: 1 METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQT-TSTPRRRAQSRLLELERHVAINGR 60
Query: 76 IPMTIAP-----VDGRGWT-LAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKK 135
IPMTIAP + WT + ++VVKG+LQRFFVLDFNDQAMNRFVEHQMLTT K+
Sbjct: 61 IPMTIAPGAEKPISPHAWTDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKE 120
Query: 136 FWAYCHKHFKKYSDPEEAHANLPNILVGRYED 157
F A CHKHFKKYSDPEEA AN PN LVGR ED
Sbjct: 121 FRADCHKHFKKYSDPEEARANPPNALVGRDED 151
BLAST of MELO3C032027.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3BNG3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00960 PE=4 SV=1)
HSP 1 Score: 200 bits (508), Expect = 6.95e-61
Identity = 113/187 (60.43%), Postives = 125/187 (66.84%), Query Frame = 0
Query: 2 STCIMSSSYPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQS 61
S ++ SY R +F+ETD MFL+ LDN AGGSSSV DN S Q TPTPRRRAQS
Sbjct: 88 SATLVIMSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQS 147
Query: 62 RLLELERHVAVHGRIPMTIAP--------------------------VDGRGWT-LAENT 121
RLLELERHVA++GRIPMTIAP V WT +
Sbjct: 148 RLLELERHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREY 207
Query: 122 LKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNI 157
++VVKG+LQRFFVLDFNDQAMNRFVEHQMLTT K+F A CHKHFKKYSDPEEA AN PN
Sbjct: 208 IEVVKGDLQRFFVLDFNDQAMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNA 267
BLAST of MELO3C032027.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TE89 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00360 PE=4 SV=1)
HSP 1 Score: 199 bits (506), Expect = 2.11e-60
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 0
Query: 1 MSTCIMSSSYPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQ 60
M+TCIMSSSYP HNFLE DTMFLE LDN GGSS SS QQP TPTPRR Q
Sbjct: 104 MNTCIMSSSYPCHNFLEIDTMFLEFQDELDNLTGGSSWWV--TISSSQQPMTPTPRRYVQ 163
Query: 61 SRLLELERHVAVHGRIPMTIAPVDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVE 120
S+LLELERH+AVHGRIPMTIA GR + ++VVK +LQRFFVL+FNDQAMNRFVE
Sbjct: 164 SQLLELERHIAVHGRIPMTIASEVGREY------IEVVKDDLQRFFVLNFNDQAMNRFVE 223
Query: 121 HQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNIL 151
HQ+LTT K+FW CH+HFKKYS+PEEA N PNIL
Sbjct: 224 HQILTTFKEFWVDCHRHFKKYSEPEEARGNPPNIL 250
BLAST of MELO3C032027.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7V322 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001320 PE=4 SV=1)
HSP 1 Score: 191 bits (484), Expect = 1.56e-59
Identity = 102/151 (67.55%), Postives = 115/151 (76.16%), Query Frame = 0
Query: 16 LETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGR 75
+ETD MFL+ LDN AGGSSSV DN GSS QQ TPTPR+RAQSRLLELERHV ++GR
Sbjct: 1 METDDMFLQFEDDLDNIAGGSSSVGDNTGSSSQQT-TPTPRKRAQSRLLELERHVTINGR 60
Query: 76 IPMTIAP-----VDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKF 135
IPMTIAP + + ++VVKG+LQR FV+DFNDQAMNRFVEHQMLTT K+F
Sbjct: 61 IPMTIAPGTEKPISPHWADIGREYIEVVKGDLQRLFVIDFNDQAMNRFVEHQMLTTFKEF 120
Query: 136 WAYCHKHFKKYSDPEEAHANLPNILVGRYED 157
CH+HFKKYSDPEEA AN PN LVGR ED
Sbjct: 121 RTDCHRHFKKYSDPEEARANPPNALVGRDED 150
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0060720.1 | 1.39e-96 | 100.00 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK01463.1 CACTA en-... | [more] |
KAA0038905.1 | 2.61e-62 | 71.71 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
TYJ99698.1 | 1.43e-60 | 60.43 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
KAA0041610.1 | 4.36e-60 | 69.03 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK19647.1 CACTA en-... | [more] |
KAA0062622.1 | 3.22e-59 | 67.55 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V073 | 6.73e-97 | 100.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7TBZ0 | 1.26e-62 | 71.71 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5D3BNG3 | 6.95e-61 | 60.43 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7TE89 | 2.11e-60 | 69.03 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7V322 | 1.56e-59 | 67.55 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
Match Name | E-value | Identity | Description | |