MELO3C032023 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032023
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Nicastrin
Location	chr06: 13340975 .. 13341561 (+)
RNA-Seq Expression	MELO3C032023
Synteny	MELO3C032023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATCCGACGGACTCCGATTTGATAGAAAGAACACCCAAATCATCATCCATGTCTTCCCAGTTTCTCTACCTCCTTCTGTTTCTTACTTCTCTTCGTCTCTCTTCATCAGGTATGTTCAAAGAGAAATAGCTATCAATTTTTTTTGTTTCAATGTCTTCTTATTGCTCGTTGGATATGAATGCCAATCAGTGTTGACGTCTTGTGTATAAATTACTTCCAATTTCGTATTCTGTATAGTTTATTGGCAGCTAAAGGGTGCATTGTTTGCAGCAATTAGTTGCCGTTTTGATACTTTATATATGCATTTCACCACCGAATGTTTTGTTGTACGTGTTTTGTTTGCTTAAACGCTGGTTTCTCTGCTTCCCTTCAAGTTCTCATTGCATATACATCATATTTTTTTAACCAGTGGAGTTACTATTCCATCCCCACCAAGCTTATTCTATGGTTCATACTCTTCTGATGCCTCTCTGCCGAACTCCCCAAACTATCCTATCATGTGGCAGAAGGTTGGAAGAACATTTTTAGATGTTGCTGTTCCCATTGTATGGTTGATTACTGTTGCTACATCGTTTGGCTGA

mRNA sequence

ATGAACGATCCGACGGACTCCGATTTGATAGAAAGAACACCCAAATCATCATCCATGTCTTCCCAGTTTCTCTACCTCCTTCTGTTTCTTACTTCTCTTCGTCTCTCTTCATCAGTTACTATTCCATCCCCACCAAGCTTATTCTATGGTTCATACTCTTCTGATGCCTCTCTGCCGAACTCCCCAAACTATCCTATCATGTGGCAGAAGGTTGGAAGAACATTTTTAGATGTTGCTGTTCCCATTGTATGGTTGATTACTGTTGCTACATCGTTTGGCTGA

Coding sequence (CDS)

ATGAACGATCCGACGGACTCCGATTTGATAGAAAGAACACCCAAATCATCATCCATGTCTTCCCAGTTTCTCTACCTCCTTCTGTTTCTTACTTCTCTTCGTCTCTCTTCATCAGTTACTATTCCATCCCCACCAAGCTTATTCTATGGTTCATACTCTTCTGATGCCTCTCTGCCGAACTCCCCAAACTATCCTATCATGTGGCAGAAGGTTGGAAGAACATTTTTAGATGTTGCTGTTCCCATTGTATGGTTGATTACTGTTGCTACATCGTTTGGCTGA

Protein sequence

MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSSVTIPSPPSLFYGSYSSDASLPNSPNYPIMWQKVGRTFLDVAVPIVWLITVATSFG

Homology

[Close]

BLAST of MELO3C032023 vs. NCBI nr
Match: XP_008457117.1 (PREDICTED: nicastrin isoform X2 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

[Close]

BLAST of MELO3C032023 vs. NCBI nr
Match: XP_008457115.1 (PREDICTED: nicastrin isoform X1 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

[Close]

BLAST of MELO3C032023 vs. ExPASy TrEMBL
Match: A0A1S3C4C7 (Nicastrin OS=Cucumis melo OX=3656 GN=LOC103496866 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

[Close]

BLAST of MELO3C032023 vs. ExPASy TrEMBL
Match: A0A1S3C4S1 (Nicastrin OS=Cucumis melo OX=3656 GN=LOC103496866 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

The following BLAST results are available for this feature:

BLAST of MELO3C032023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457117.1	6.7e-09	100.00	PREDICTED: nicastrin isoform X2 [Cucumis melo]	[more]
XP_008457115.1	6.7e-09	100.00	PREDICTED: nicastrin isoform X1 [Cucumis melo]	[more]

BLAST of MELO3C032023 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C4C7	3.3e-09	100.00	Nicastrin OS=Cucumis melo OX=3656 GN=LOC103496866 PE=3 SV=1	[more]
A0A1S3C4S1	3.3e-09	100.00	Nicastrin OS=Cucumis melo OX=3656 GN=LOC103496866 PE=3 SV=1	[more]

BLAST of MELO3C032023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032023.1	MELO3C032023.1	mRNA