MELO3C032010.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032010.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr06: 13532932 .. 13533402 (-)
RNA-Seq ExpressionMELO3C032010.jh1
SyntenyMELO3C032010.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAATTGATAATGAGAGGGAAGAAATCATGTGGCATGGGATCATGAGAAATAAAATAGTAAAGTAAGAGATAAGGTACTTAAGTTTTTAGAAAATAAAAATAAAATTAACTATACCTTTAATGTCGGTTTTAAACCGACATTAAAGCTCTCTCTTTAATATCGATTTAAAACCGACATTAAACATCCGCATTTTAAAAAGTGACACTAAAGTTCCGTTTTTATTTTTCCAACCGACATTAAAGGGCATATTTCTTCTAGTGTAATACTTTATTTCTAATTTTCATAACTTGCTCATTATGCTTAATATTGCATTTTATATTTCCTTGTTGGTGTAGAGTATTAATAACAACAATACTCTTCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGGAGGGTGGTTGTTGAAGGTCGATGGGCCTCAAATGATCCTAAAGTTACTGTTCACCATGTACAAAGCCTAA

mRNA sequence

ATGGAAGAAATTGATAATGAGAGGGAAGAAATCATGTGGCATGGGATCATGAGAAATAAAATAAGTATTAATAACAACAATACTCTTCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGGAGGGTGGTTGTTGAAGGTCGATGGGCCTCAAATGATCCTAAAGTTACTGTTCACCATGTACAAAGCCTAA

Coding sequence (CDS)

ATGGAAGAAATTGATAATGAGAGGGAAGAAATCATGTGGCATGGGATCATGAGAAATAAAATAAGTATTAATAACAACAATACTCTTCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGGAGGGTGGTTGTTGAAGGTCGATGGGCCTCAAATGATCCTAAAGTTACTGTTCACCATGTACAAAGCCTAA

Protein sequence

MEEIDNEREEIMWHGIMRNKISINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMYKA
Homology
BLAST of MELO3C032010.jh1 vs. NCBI nr
Match: XP_008439329.1 (PREDICTED: uncharacterized protein LOC103484152 isoform X1 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 1.86e-08
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 22  SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMY 61
           SIN+NNTLRKCTL        WLLKVDG QMILKLLFTM+
Sbjct: 62  SINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKLLFTMF 101

BLAST of MELO3C032010.jh1 vs. NCBI nr
Match: XP_008439330.1 (PREDICTED: uncharacterized protein LOC103484152 isoform X2 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 1.86e-08
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 22  SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMY 61
           SIN+NNTLRKCTL        WLLKVDG QMILKLLFTM+
Sbjct: 62  SINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKLLFTMF 101

BLAST of MELO3C032010.jh1 vs. NCBI nr
Match: KAA0050424.1 (uncharacterized protein E6C27_scaffold175G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.27e-07
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 22  SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMY 61
           SIN+NNTLRKCTL        WLLKVDG QMILKLLFTM+
Sbjct: 250 SINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKLLFTMF 289

BLAST of MELO3C032010.jh1 vs. NCBI nr
Match: KAA0037120.1 (uncharacterized protein E6C27_scaffold379G00240 [Cucumis melo var. makuwa] >TYK13953.1 uncharacterized protein E5676_scaffold832G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 5.72e-06
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0

Query: 11 IMWHGIMRNKISINNNNTLRKCTLLDWGGTG 41
          +  + I  + +SINNNNTLRKCTLLDWGGTG
Sbjct: 21 VATNSIGTSPLSINNNNTLRKCTLLDWGGTG 51

BLAST of MELO3C032010.jh1 vs. NCBI nr
Match: KAA0043591.1 (uncharacterized protein E6C27_scaffold320G00220 [Cucumis melo var. makuwa] >TYK29769.1 uncharacterized protein E5676_scaffold2208G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 3.28e-05
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0

Query: 21 ISINNNNTLRKCTLLDWGGTG 41
          +SINNNNTLRKCTLLDWGGTG
Sbjct: 8  MSINNNNTLRKCTLLDWGGTG 28

BLAST of MELO3C032010.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AZ75 (uncharacterized protein LOC103484152 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484152 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.01e-09
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 22  SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMY 61
           SIN+NNTLRKCTL        WLLKVDG QMILKLLFTM+
Sbjct: 62  SINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKLLFTMF 101

BLAST of MELO3C032010.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AYI6 (uncharacterized protein LOC103484152 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484152 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.01e-09
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 22  SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMY 61
           SIN+NNTLRKCTL        WLLKVDG QMILKLLFTM+
Sbjct: 62  SINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKLLFTMF 101

BLAST of MELO3C032010.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U5B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00120 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.17e-08
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 22  SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMY 61
           SIN+NNTLRKCTL        WLLKVDG QMILKLLFTM+
Sbjct: 250 SINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKLLFTMF 289

BLAST of MELO3C032010.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CQ15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001550 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.77e-06
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0

Query: 11 IMWHGIMRNKISINNNNTLRKCTLLDWGGTG 41
          +  + I  + +SINNNNTLRKCTLLDWGGTG
Sbjct: 21 VATNSIGTSPLSINNNNTLRKCTLLDWGGTG 51

BLAST of MELO3C032010.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E1Y4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00260 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.59e-05
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0

Query: 21 ISINNNNTLRKCTLLDWGGTG 41
          +SINNNNTLRKCTLLDWGGTG
Sbjct: 8  MSINNNNTLRKCTLLDWGGTG 28

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008439329.11.86e-0872.50PREDICTED: uncharacterized protein LOC103484152 isoform X1 [Cucumis melo][more]
XP_008439330.11.86e-0872.50PREDICTED: uncharacterized protein LOC103484152 isoform X2 [Cucumis melo][more]
KAA0050424.11.27e-0772.50uncharacterized protein E6C27_scaffold175G00120 [Cucumis melo var. makuwa][more]
KAA0037120.15.72e-0667.74uncharacterized protein E6C27_scaffold379G00240 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0043591.13.28e-0595.24uncharacterized protein E6C27_scaffold320G00220 [Cucumis melo var. makuwa] >TYK2... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AZ759.01e-0972.50uncharacterized protein LOC103484152 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3AYI69.01e-0972.50uncharacterized protein LOC103484152 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7U5B06.17e-0872.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CQ152.77e-0667.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E1Y41.59e-0595.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032010.jh1.t1MELO3C032010.jh1.t1mRNA