MELO3C031993.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031993.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr06: 12301067 .. 12302268 (+)
RNA-Seq Expression	MELO3C031993.jh1
Synteny	MELO3C031993.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGATAGGCCTCATCGAGTGCCTCGTAGAGTTAGTCAATGCTGGTGGGTGGAGGTCCGACAACGGGACGTGTCGACTCGGATACCAAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAAATTCTAAGGTCCATGTTTCAACGATCGATAACCAAATAAAATTGTTGAAGAGAATGTTCCATGCAATTGTGGAGATGTATGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGGTGCGTTACTAGTCATTTGTGTGATTATTGTAGTATATTTCAAAAAATGGACTAAAAATGTATTATTGCACTTATACAGAGTCATCTGGCGGCTAAGGGCCTCTTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACGTGTTTAGCAAAGATCGTGCAACGGGAGGCCGGACTGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTACTGGGTATGAGACATTTGCCACTGTCGCTGCGTCGGATACGGACTTCCAACCTATGTACAATCAAAGATTGAACATGTCGCCTGGTGAATTGATGGGAACAAAAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTCAAGCGGGTCTAAACAGAAACGTGGAGGACAAGACACAGACAGTGGGGACGTACTTTGCACTGCGGTTGAGTATGGAAATGTACAATTGAACCGCATTGCTGAATGACTTGTCCTACAACGTCAAGACGCAAGCCAAGCACATCAAGAGGTTGTCCAACAGTTGGAGGCCATCCATGAGCTGACATTAATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATCACATGAAAGCTTTCCTTGAGGTTCCCGACAATATATAGTATCCGTACTGCAACATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTACTGGCTTTTTTTACTTGGACTATATGTTCTTCTTCTTACTTGTTTTGTCTTACTATCTAACGAACTTCTCTTTATGTTCAAGCTTTATGGTTTGTATTTTCATTTCGCTTTCCAATGTAATGATTTGATATTGTTTCATTATCGTATTAATGTACTATTTTCGTTCAA

mRNA sequence

GTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGATAGGCCTCATCGAGTGCCTCGTAGAGTTAGTCAATGCTGGTGGGTGGAGGTCCGACAACGGGACGTGTCGACTCGGATACCAAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAAATTCTAAGGTCCATGTTTCAACGATCGATAACCAAATAAAATTGTTGAAGAGAATGTTCCATGCAATTGTGGAGATGTATGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCTGGCGGCTAAGGGCCTCTTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACGTGTTTAGCAAAGATCGTGCAACGGGAGGCCGGACTGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTACTGGGTATGAGACATTTGCCACTGTCGCTGCGTCGGATACGGACTTCCAACCTATGTACAATCAAAGATTGAACATGTCGCCTGGTGAATTGATGGGAACAAAAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTCAAGCGGGTCTAAACAGAAACGTGGAGGACAAGACACAGACAGTGGGGACGTACTTTGCACTGCGGTTGAGTATGGAAATGTACAATTGAACCGCATTGCTGAATGACTTGTCCTACAACGTCAAGACGCAAGCCAAGCACATCAAGAGGTTGTCCAACAGTTGGAGGCCATCCATGAGCTGACATTAATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATCACATGAAAGCTTTCCTTGAGGTTCCCGACAATATATAGTATCCGTACTGCAACATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTACTGGCTTTTTTTACTTGGACTATATGTTCTTCTTCTTACTTGTTTTGTCTTACTATCTAACGAACTTCTCTTTATGTTCAAGCTTTATGGTTTGTATTTTCATTTCGCTTTCCAATGTAATGATTTGATATTGTTTCATTATCGTATTAATGTACTATTTTCGTTCAA

Coding sequence (CDS)

ATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGATAGGCCTCATCGAGTGCCTCGTAGAGTTAGTCAATGCTGGTGGGTGGAGGTCCGACAACGGGACGTGTCGACTCGGATACCAAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAAATTCTAAGGTCCATGTTTCAACGATCGATAACCAAATAAAATTGTTGAAGAGAATGTTCCATGCAATTGTGGAGATGTATGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACGATTGGGTCAAGAGTCATCTGGCGGCTAAGGGCCTCTTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACGTGTTTAGCAAAGATCGTGCAACGGGAGGCCGGACTGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTACTGGGTATGAGACATTTGCCACTGTCGCTGCGTCGGATACGGACTTCCAACCTATGTACAATCAAAGATTGAACATGTCGCCTGGTGAATTGATGGGAACAAAAACCGCTCGGGTAAGTGAAGGTAGGTATGTTTCAAGCGGGTCTAAACAGAAACGTGGAGGACAAGACACAGACAGTGGGGACGTACTTTGCACTGCGGTTGAGTATGGAAATGTACAATTGAACCGCATTGCTGAATGA

Protein sequence

MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSKVHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRLNMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE

Homology

[Close]

BLAST of MELO3C031993.jh1 vs. NCBI nr
Match: KAA0037173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK13900.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 489 bits (1259), Expect = 1.23e-174
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK
Sbjct: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL
Sbjct: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
           FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL
Sbjct: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE
Sbjct: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236

[Close]

BLAST of MELO3C031993.jh1 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 374 bits (960), Expect = 1.88e-128
Identity = 176/236 (74.58%), Postives = 197/236 (83.47%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MASSSRLPKH WTKEEE  L+ECLVELVNAGGWRSDNGT R GY NQL RMMAFKIP   
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIV EKE+FDDWVKSH  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESF D+GSNDP GY+ FA  AA DT+F PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+T RVSE R VSSGSK+KR G  TDSGD++CTA+EY N QL+RIAE
Sbjct: 181 NMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAE 236

[Close]

BLAST of MELO3C031993.jh1 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373 bits (958), Expect = 3.79e-128
Identity = 178/236 (75.42%), Postives = 198/236 (83.90%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MASSSRLPKH WTKEEE  L+ECLVELVNAGGWRSDNGT R GY NQL RMMAFKIP   
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIV EKE+FDDWVKSH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 236

[Close]

BLAST of MELO3C031993.jh1 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 372 bits (956), Expect = 1.89e-127
Identity = 180/236 (76.27%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE GL+ECLVELVNAGGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDW  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 234

[Close]

BLAST of MELO3C031993.jh1 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 372 bits (954), Expect = 3.82e-127
Identity = 180/236 (76.27%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE GL+ECLVELVNAGGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDW  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 234

[Close]

BLAST of MELO3C031993.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T2H9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00900 PE=4 SV=1)

HSP 1 Score: 489 bits (1259), Expect = 5.96e-175
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK
Sbjct: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL
Sbjct: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
           FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL
Sbjct: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE
Sbjct: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236

[Close]

BLAST of MELO3C031993.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 9.12e-129
Identity = 176/236 (74.58%), Postives = 197/236 (83.47%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MASSSRLPKH WTKEEE  L+ECLVELVNAGGWRSDNGT R GY NQL RMMAFKIP   
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIV EKE+FDDWVKSH  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESF D+GSNDP GY+ FA  AA DT+F PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+T RVSE R VSSGSK+KR G  TDSGD++CTA+EY N QL+RIAE
Sbjct: 181 NMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAE 236

[Close]

BLAST of MELO3C031993.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 373 bits (958), Expect = 1.84e-128
Identity = 178/236 (75.42%), Postives = 198/236 (83.90%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           MASSSRLPKH WTKEEE  L+ECLVELVNAGGWRSDNGT R GY NQL RMMAFKIP   
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIV EKE+FDDWVKSH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 236

[Close]

BLAST of MELO3C031993.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 372 bits (956), Expect = 9.17e-128
Identity = 180/236 (76.27%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE GL+ECLVELVNAGGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDW  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 234

[Close]

BLAST of MELO3C031993.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 372 bits (954), Expect = 1.85e-127
Identity = 180/236 (76.27%), Postives = 199/236 (84.32%), Query Frame = 0


Query: 1   MASSSRLPKHNWTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMAFKIPNSK 60
           M SSSRLPKH WTKEEE GL+ECLVELVNAGGWRSDNGT R GY NQLARMMAFKIP S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGL 120
           +H STID++IKL+KRMFHA+ EM GP C+GFGWNDE+KCIVAEKEVFDDW  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 FNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRL 180
            NKSF+HYDELSYVF KDRATGGR ESFAD+GSNDP GY+  A  A  DTDF PMY+  L
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPGELMGTKTARVSEGRYVSSGSKQKRGGQDTDSGDVLCTAVEYGNVQLNRIAE 236
           NMSP +LM T+TARVSE R VSSGSK+KR G  TDSGD++ TA+EYGN QL+RIAE
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 234

[Close]

BLAST of MELO3C031993.jh1 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-11
Identity = 44/151 (29.14%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 8   PKHNWTKEEEIGLIECLVELVNAGGWRSDNGTC-RLGYQNQLARMMAFKIPNSKVHVSTI 67
           P + WT +E     + L+EL+    WR  +G   +L  +++L   +  ++  +K H + +
Sbjct: 13  PYNQWTPDE----TDVLIELIRQ-NWRDSSGIIGKLTVESKLLPALNKRLGCNKNHKNYM 72

Query: 68  DNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFL 127
            +++K LK ++ + +++     +GFGW+ E K   A  EV+ D++K+H   K +  +S  
Sbjct: 73  -SRLKFLKNLYQSYLDL-KRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESID 132

Query: 128 HYDELSYVFSKDRATGGRTESFADVGSNDPT 158
           H+++L  +F    ATG    SFA VG +D T
Sbjct: 133 HFEDLQIIFGDVVATG----SFA-VGMSDST 151

[Close]

BLAST of MELO3C031993.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-07
Identity = 36/140 (25.71%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 12  WTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMA-FKIPNSKVHVSTIDNQI 71
           WT E +   IE +VE V  G    D+   +  ++       A FK    K     + N+ 
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGK---DVLKNRH 73

Query: 72  KLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDE 131
           K L+ +F ++  +     +GF W+D ++ +VA+  V+D+++K H  ++    KS   Y +
Sbjct: 74  KTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKD 133

Query: 132 LSYVFSKDRATGGRTESFAD 151
           L  V+S   +     ES ++
Sbjct: 134 LCLVYSDGMSEHKAEESISE 148

[Close]

BLAST of MELO3C031993.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 52.4 bits (124), Expect = 5.9e-07
Identity = 36/140 (25.71%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 12  WTKEEEIGLIECLVELVNAGGWRSDNGTCRLGYQNQLARMMA-FKIPNSKVHVSTIDNQI 71
           WT E +   IE +VE V  G    D+   +  ++       A FK    K     + N+ 
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGK---DVLKNRH 73

Query: 72  KLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDE 131
           K L+ +F ++  +     +GF W+D ++ +VA+  V+D+++K H  ++    KS   Y +
Sbjct: 74  KTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKD 133

Query: 132 LSYVFSKDRATGGRTESFAD 151
           L  V+S   +     ES ++
Sbjct: 134 LCLVYSDGMSEHKAEESISE 148

The following BLAST results are available for this feature:

BLAST of MELO3C031993.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037173.1	1.23e-174	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK13900.1 retrotransposon p...	[more]
KAA0047075.1	1.88e-128	74.58	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05082.1	3.79e-128	75.42	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035621.1	1.89e-127	76.27	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	3.82e-127	76.27	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]

BLAST of MELO3C031993.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031993.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2H9	5.96e-175	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U098	9.12e-129	74.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C1M0	1.84e-128	75.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DPR5	9.17e-128	76.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	1.85e-127	76.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C031993.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	8.7e-11	29.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	5.9e-07	25.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	5.9e-07	25.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..108 e-value: 1.2E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..217
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..152
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031993.jh1.t1	MELO3C031993.jh1.t1	mRNA