MELO3C031988 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031988
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr08: 27234305 .. 27234832 (-)
RNA-Seq Expression	MELO3C031988
Synteny	MELO3C031988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCATGTTTTCAATTGCATTGTCGTTTCCAAACATGGTGCATATGTATGTGACTGTGAGTAAGGTAGATTTGACTGTAAAAACTTAAATGTAGAACCAGAATATGTTGAAGAATATGTTGATGTTGACTCGGAGTCAGATGCACAACCAATGTGCCATAAAGAAGAAATGGTAGCTAACAACGAATATAGAGAGTTTAGAACAGAAACTGATGACGAATTCGAAGAGATGCACTTCAATGGCCGTGAATATGAAGTTCCATCCAATACATTCATTGAGTTGGACATGAATGCAGTAGATAGCATTCAGGAACATGATCCAATTATAGTTTTGATGGTGACCGACAACACGAAATTGTACAAGGGAATGATTTGTGAAAACAAAGAAATATTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGTACCATATGAAGTAGTAGAGTCAACACCGACAAAGTGAGTCATCCGATGTAAGAAGTCAAACGAAGGTTGCAGATGGAGACTTCATGCAATAA

mRNA sequence

ATGAACACCATGTTTTCAATTGCATTGTCGTTTCCAAACATGGTGCATATGTATGTGACTGTGAGTAAGGTAGATTTGACTGTAAAAACTTAAATGTAGAACCAGAATATGTTGAAGAATATGTTGATGTTGACTCGGAGTCAGATGCACAACCAATGTGCCATAAAGAAGAAATGGTAGCTAACAACGAATATAGAGAGTTTAGAACAGAAACTGATGACGAATTCGAAGAGATGCACTTCAATGGCCGTGAATATGAAGTTCCATCCAATACATTCATTGAGTTGGACATGAATGCAGTAGATAGCATTCAGGAACATGATCCAATTATAGTTTTGATGGTGACCGACAACACGAAATTGTACAAGGGAATGATTTGTGAAAACAAAGAAATATTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGTACCATATGAAGTAGTAGAGTCAACACCGACAAAGTGAGTCATCCGATGTAAGAAGTCAAACGAAGGTTGCAGATGGAGACTTCATGCAATAA

Coding sequence (CDS)

ATGTGCCATAAAGAAGAAATGGTAGCTAACAACGAATATAGAGAGTTTAGAACAGAAACTGATGACGAATTCGAAGAGATGCACTTCAATGGCCGTGAATATGAAGTTCCATCCAATACATTCATTGAGTTGGACATGAATGCAGTAGATAGCATTCAGGAACATGATCCAATTATAGTTTTGATGGTGACCGACAACACGAAATTGTACAAGGGAATGATTTGTGAAAACAAAGAAATATTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGTACCATATGAAGTAGTAGAGTCAACACCGACAAAGTGA

Protein sequence

MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIVLMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK

Homology

[Close]

BLAST of MELO3C031988 vs. NCBI nr
Match: TYJ97998.1 (uncharacterized protein E5676_scaffold487G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV
Sbjct: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
           LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK
Sbjct: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 105

[Close]

BLAST of MELO3C031988 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 9.5e-44
Identity = 90/105 (85.71%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSNTF +LDMNAVD+IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENKE++QHMVKCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.6e-43
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSNTF +LDMNAVD IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENK++LQHMVKCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 3.6e-43
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSNTF +LDMNAVD IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENK++LQHMVKCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.7e-43
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSN F +LDMNAVD IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENKE+LQHM+KCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. ExPASy TrEMBL
Match: A0A5D3BII2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00210 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.3e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV
Sbjct: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
           LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK
Sbjct: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 105

[Close]

BLAST of MELO3C031988 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.6e-44
Identity = 90/105 (85.71%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSNTF +LDMNAVD+IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENKE++QHMVKCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSNTF +LDMNAVD IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENK++LQHMVKCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSNTF +LDMNAVD IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENK++LQHMVKCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTK 198

[Close]

BLAST of MELO3C031988 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-43
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MCHKEEMVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSIQEHDPIIV 60
           +CH+EEMVA NEY EFRTETDDEFEEM F+G EYEVPSN F +LDMNAVD IQEHDPIIV
Sbjct: 94  VCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIV 153

Query: 61  LMVTDNTKLYKGMICENKEILQHMVKCFAIKSHVPYEVVESTPTK 106
            MVTDNTKLY GMICENKE+LQHM+KCFAIKSH PYEVVESTPTK
Sbjct: 154 PMVTDNTKLYTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTK 198

The following BLAST results are available for this feature:

BLAST of MELO3C031988 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97998.1	1.9e-52	100.00	uncharacterized protein E5676_scaffold487G00210 [Cucumis melo var. makuwa]	[more]
KAA0034014.1	9.5e-44	85.71	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
KAA0036768.1	3.6e-43	85.71	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	3.6e-43	85.71	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0040476.1	4.7e-43	84.76	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of MELO3C031988 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BII2	9.3e-53	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SS31	4.6e-44	85.71	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	1.7e-43	85.71	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T1X8	1.7e-43	85.71	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DIM2	2.3e-43	84.76	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of MELO3C031988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031988.1	MELO3C031988.1	mRNA