MELO3C031987 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031987
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr01: 20214166 .. 20214494 (+)
RNA-Seq Expression	MELO3C031987
Synteny	MELO3C031987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATTAGTCCTCTTATATGTTTCTACATTGGTTAGTGGCATCATCCTGACAGAACACTTAGACAGTTTGGTATTCAACAAGATGTTCCACATGGCTGTAATACTGAACCATTGTTGCACGACATTAACCTGAGGACTGCTGATTGGTCAGATAAAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTTACAACTACAAGACCTCCAATTGGGCAATTTGATATGGATGTAACTCAAGAATACATCTATTGGTACAAAAACATTACCAGGCTCTATATCACCTAATCGAGAGCTACTGTGGGTCTCTGGTACACATTTAA

mRNA sequence

ACAATTAGTCCTCTTATATGTTTCTACATTGGTTAGTGGCATCATCCTGACAGAACACTTAGACAGTTTGGTATTCAACAAGATGTTCCACATGGCTGTAATACTGAACCATTGTTGCACGACATTAACCTGAGGACTGCTGATTGGTCAGATAAAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTTACAACTACAAGACCTCCAATTGGGCAATTTGATATGGATGTAACTCAAGAATACATCTATTGGTACAAAAACATTACCAGGCTCTATATCACCTAATCGAGAGCTACTGTGGGTCTCTGGTACACATTTAA

Coding sequence (CDS)

ATGCGATGGCTAAATCGCAGAAGGTTTACAACTACAAGACCTCCAATTGGGCAATTTGATATGGATGTAACTCAAGAATACATCTATTGGTACAAAAACATTACCAGGCTCTATATCACCTAA

Protein sequence

MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT

Homology

[Close]

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0055863.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK24087.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
          MRW NRRRFTTTRPPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 44 MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYIT 83

[Close]

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYI 40
          MRWLNRRRFT  RPP+ QFDMDVTQEYI WYKNITRLYI
Sbjct: 58 MRWLNRRRFTAIRPPVEQFDMDVTQEYINWYKNITRLYI 96

[Close]

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0039599.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNIT+LYIT
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYIT 261

[Close]

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRWLNRRRFT T P + QFDMDVTQEYI+WYKNITRLYIT
Sbjct: 65  MRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYIT 104

[Close]

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 9.0e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYIT 292

[Close]

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5D3DKG5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00590 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
          MRW NRRRFTTTRPPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 44 MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYIT 83

[Close]

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5A7U9Y2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00310 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYI 40
          MRWLNRRRFT  RPP+ QFDMDVTQEYI WYKNITRLYI
Sbjct: 58 MRWLNRRRFTAIRPPVEQFDMDVTQEYINWYKNITRLYI 96

[Close]

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5A7TEE9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00760 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNIT+LYIT
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYIT 261

[Close]

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRWLNRRRFT T P + QFDMDVTQEYI+WYKNITRLYIT
Sbjct: 65  MRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYIT 104

[Close]

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYIT 783

The following BLAST results are available for this feature:

BLAST of MELO3C031987 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055863.1	3.7e-12	87.50	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0051227.1	2.4e-11	87.18	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0039599.1	3.1e-11	85.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0050408.1	4.0e-11	85.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0036767.1	9.0e-11	82.50	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of MELO3C031987 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKG5	1.8e-12	87.50	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7U9Y2	1.1e-11	87.18	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TEE9	1.5e-11	85.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7U558	2.0e-11	85.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DUI1	4.4e-11	82.50	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO3C031987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031987.1	MELO3C031987.1	mRNA