MELO3C031987 (gene) Melon (DHL92) v4

Overview
NameMELO3C031987
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr01: 20214166 .. 20214494 (+)
RNA-Seq ExpressionMELO3C031987
SyntenyMELO3C031987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATTAGTCCTCTTATATGTTTCTACATTGGTTAGTGGCATCATCCTGACAGAACACTTAGACAGTTTGGTATTCAACAAGATGTTCCACATGGCTGTAATACTGAACCATTGTTGCACGACATTAACCTGAGGACTGCTGATTGGTCAGATAAAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTTACAACTACAAGACCTCCAATTGGGCAATTTGATATGGATGTAACTCAAGAATACATCTATTGGTACAAAAACATTACCAGGCTCTATATCACCTAATCGAGAGCTACTGTGGGTCTCTGGTACACATTTAA

mRNA sequence

ACAATTAGTCCTCTTATATGTTTCTACATTGGTTAGTGGCATCATCCTGACAGAACACTTAGACAGTTTGGTATTCAACAAGATGTTCCACATGGCTGTAATACTGAACCATTGTTGCACGACATTAACCTGAGGACTGCTGATTGGTCAGATAAAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTTACAACTACAAGACCTCCAATTGGGCAATTTGATATGGATGTAACTCAAGAATACATCTATTGGTACAAAAACATTACCAGGCTCTATATCACCTAATCGAGAGCTACTGTGGGTCTCTGGTACACATTTAA

Coding sequence (CDS)

ATGCGATGGCTAAATCGCAGAAGGTTTACAACTACAAGACCTCCAATTGGGCAATTTGATATGGATGTAACTCAAGAATACATCTATTGGTACAAAAACATTACCAGGCTCTATATCACCTAA

Protein sequence

MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT
Homology
BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0055863.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK24087.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0

Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
          MRW NRRRFTTTRPPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 44 MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYIT 83

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYI 40
          MRWLNRRRFT  RPP+ QFDMDVTQEYI WYKNITRLYI
Sbjct: 58 MRWLNRRRFTAIRPPVEQFDMDVTQEYINWYKNITRLYI 96

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0039599.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNIT+LYIT
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYIT 261

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRWLNRRRFT T P + QFDMDVTQEYI+WYKNITRLYIT
Sbjct: 65  MRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYIT 104

BLAST of MELO3C031987 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 9.0e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYIT 292

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5D3DKG5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00590 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0

Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
          MRW NRRRFTTTRPPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 44 MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYIT 83

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5A7U9Y2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00310 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYI 40
          MRWLNRRRFT  RPP+ QFDMDVTQEYI WYKNITRLYI
Sbjct: 58 MRWLNRRRFTAIRPPVEQFDMDVTQEYINWYKNITRLYI 96

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5A7TEE9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00760 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNIT+LYIT
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYIT 261

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRWLNRRRFT T P + QFDMDVTQEYI+WYKNITRLYIT
Sbjct: 65  MRWLNRRRFTATGPLVEQFDMDVTQEYIHWYKNITRLYIT 104

BLAST of MELO3C031987 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0

Query: 1   MRWLNRRRFTTTRPPIGQFDMDVTQEYIYWYKNITRLYIT 41
           MRW NRRRFT T PPI QFDMDVTQEYI+WYKNI++LYIT
Sbjct: 744 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYIT 783

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055863.13.7e-1287.50serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0051227.12.4e-1187.18mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0039599.13.1e-1185.00serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0050408.14.0e-1185.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0036767.19.0e-1182.50serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKG51.8e-1287.50Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7U9Y21.1e-1187.18Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TEE91.5e-1185.00Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7U5582.0e-1185.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DUI14.4e-1182.50Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031987.1MELO3C031987.1mRNA