MELO3C031967 (gene) Melon (DHL92) v4

Overview
NameMELO3C031967
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionU11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1
Locationchr06: 11228298 .. 11233062 (+)
RNA-Seq ExpressionMELO3C031967
SyntenyMELO3C031967
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGGTTCTCTTTCTTTTCTCTCAATTCATTTTAAGGAAGTCTTTTGAGGTAGAAAGAGGGAGCATAGTGAGATTTGGTCTTTGGTTAGGTTTCTCGTCACCCTTTAGGGTGTTTTGGTGGCATGTTTTCTTTTTGTATGTCTTTTTATTCTTTCACTTTTTTCCAATGAAAGTCGTTGATATCATAAAAAAAAATCACAAAGAAAACGGTCGTGCAGACTAGGTAACAATTGTTTTTGTCGAGCTTGATTGAATGTAGATAACTGTATATCCTTCACATAAGCATAATTTGTCGAGGTTGATTGAAAGTACACATACAATTTCTAGCTTCTTCAGACGATACAAAGATATGGTGTACATATCATTCAGGAAAGAAATTCTGTGTATTATATTCATGTGTTTATTCAAGATATTTCTAAAGGTTTATTTATGACTAATAATTGTTCTCATATACCAAGTGACTTGAAATTGGACATTCATTTTCTTTGCTTGGGTTGTCATTTCAGATTTTCTGTAGTTTTAAAAAGATAGTTATTAATTAAGTGTTGAATAAAATGCATTAATCTTTAAGTTCATATGTTAGACTTCTGTTACAATATAAATGAAGATTCATACTTGATGAGCAAATACAGGACATGCTTTGGTGATATCTACTGGAACTCTATTGAAGAAAATAGCTTATGAGCATAATATAGCAGATGCACAGTCTTAGTATATTAGGTGTTGTTATGATATGTGGTGCCTTTAGGCAACTTGTAGGAAGCCATTTTTACTACGAATCGTGATATTACACAGGTAATCTTCAACCCTCTTCAGTTTTACTCATTCTTAAAGCCAACAATGAAAAATGTACTTCAGATAACCATTATGTTCTTTCCATTCTCCTCTTTATTGCTAGCCTAATTTACCTTCACCTATCACCTCATCCTCATTTCTGCAAATTTTTTAAAGTTCCTCATTTTTGCTCCTTAACGTTCTTCAGTTTTATTTGAAATATAAATAAAGATTATCTTATTCAAAAACATTTCTAACTCGTAATTACATTTTTGTATATTTGAATGTATCCAATAATAGATGCTTAAAATTCAATCAATGGTTAAAAGCATAGTTTTTATCTAAGGTTGAGACAGTGGCACAATTTAGTGTTGTATTTCTTATATTTGCTCTAGGACTGGAGTTTTCTTTGACAAAGGTACACTTTTTAATTGGGAGTTTTATTTCTTTACTTAATGAATGTGTTAAAATTTTCCTTATGAGTTAAATACCTAGACTTATAGATAATTTTCTCTGCAATTAAAAGTTGTGGGAGCTTTGACTGTTTTTTGAGGTTTTCTACGGATCATCATATTTATGTTCTTGATTTTTACTGTTGTTATAGGTCATTCTTCTAGTAGTGTCTCCATATAAATTTTTAGTTTTGGCTTCTGCATAGAAAATTTTGTATTGATGATAGTTATTAATCCTATTGATTTAAAACTAGATATGTGCCTATGATTTATATGTGTTTTTTTAAAGGATATGGTATTGTTCGTGTTGAATTTATCACTAAAAAACGTTTGCTGTAAGAGACAAAGTAAGAAATTGTTATTACATCAAGTTTTGGAAATATCTCCTATCTTTCATTTATATTTGTTGTTTAATTTCAAGTTTAGAAAAAAGTAACAACTTGATCTACTTTTAAGAGTTTTGATTTTTTTTTTTTAGAATTAAAAGTTTTGATTTAGTACTTATAGTTTGGTTAAATTTTCAATGTCGACTCTATGGTTTGAATTTAATTTTAAGTCTCTATGATCTAAAATTTCATTTTTTGTATTCCATAATTTAGTATGTGGTTTTTTTTTCACTGTTACTGAGGTGGTTATTGAAGGCTTAAAAATTTGAGGAAAAATTGAGATTCTCTATAGGATAGAAATAATATTGTGATCCAGAAGTTACGGGGTTGAAAATGATATGTCTGATTTTTATGGATTGTGTTCTTTAATTATTGGGTAAGTCAAGATTTTTAGGTTTAGTTTGGTCCTTGGAACTATTTTCTTTTCTGACTTCACTATGTGAATGACTTTTTAAAATGAAAATATGATTGTTGTTGTAAGTTCTTATTACCTTCTCTATCATTAAATTGGCCTCTCTATATATAAATGCATGTATTATTAAAAGTAGTATGCTGTTATCTTTATATACAATGGTACTTTTGAGCAAAGAAACTTTGACGCTTGGATCTGGTTATATCCTAATGATAGTAGTAGTTGGTAATATATTTTTCCAGGTCATTTTCTACTAGAGGAGGATGATAAGTTTCTAAATAAGGTTTGAGCTACAGTTCAGGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATATAGATGCTGTCAAGGATGCCATTGCTACTATTGAGGTCTCTAGGAAGACTATTCCAACTTACCCTGAATCAAGGAATCCAATATTTAAGTCTCTATCAACTATGGTTAGTGGAATGGCGAATCATCCCTTCATTTGGTGCCTTTTCATTATGGCTCTTTGGCGTAAATTTTTCTAACTTTTAACTTGACAAGGCGGATGTGTGTTTCTAAGAGAATCATTGCCGATCTGTATAAAATGAGTGTGTGCTATTAATAATGTAGGAAGGAAGTTGCATTACGTCAGAGAGAGGTAGTTACAACATCAAATACGTAACATTTATGATCGTGAACATAAGGAAGGTTAGCTCTCACCATTGAAATAATTAGTGCATTGAAGTTGCTAAGATGCCATATTTTTTTGCAACTTTTATCAATGGATGGAACTATAAAGATCCTGAAAACTCCTTAGTAAGTAACATCATCTCTCAACACTCCTTGTAAAATTGATGTATGCATTCTTCAAATGATTTAGATTGTGTTGAGAAATGATGGATGATTAATAATGTGAACAAGTTCATTGGATTCAAAAGCATATATTCATCAATGTGTGACATTCAAGAAAATTGCGGACTTTGCTATATGTGATATTTGCTAAAATAGCATTCTGGACAATAGTAGCTGGAATTTTTTATTTGATTACGGATGAGTACAAATCATTACTCGTAAGCTTTCTTTTTCATTTGTTATGTTTTGAAGATTTGAATGAAGGCTACCTAAATAGTCTTTCCATTATTCTTTCTTGTGGTGGGTGGTCCTCCAAGTTATTTATAAGTTAGAAATTTTGTTTTAGTTTAAGAAAAAGTTACAGAACTTATATATTCATCTTGAATTAGGACAAAATAGTAAGGCTTTTTTTTTTTTAATTTTATTGACCACCTCTTGCAGGGCCTGTTATCGAACAATTTTTTTTATTTTTAAATTAACTTCAAGTTCTGCTACTTTTTGTTTTTTAAAATTTTAAAATTTCTTTTTTGATATTTTTATACATTCGTAAAAAGTATATTATAAAAAGTTTATCAAACACCTTTTGTAGGGCCTATTAACGAGCATGGTTCTTCAAGTAGGCAATCTGATGCTAAAGCTTAAGCTCATAACGACTTAGTTTAAGGTAAAAGGATTGGACATGACACATAACATAGCTGAGACTTGAGATTCTTCATATTATCTTTGCGTTTAATTTGAACTTTTTAGAATATTTTCTTTTGGGAGAGTATGTCTTCTCTTTACGTCTAGTTTTAGGAATGTTGCATTTCTTTCATAGTAATGAGTAATGGTTTATTAATTGATGATGATGTTGGATATTGATTATGCCCGTCTTTCCTCTCTTAATTATTGCAGTTTTTCTTCCCATATTTTCTTGTCCAAAGATCACCATTTGTGCATCCAATTGCAGTTCTTCAGCTAATTTGGTTTCTGTAGGTTTTGGTTTCCATTAATATTTTAATTCTGCATTGCTAAATGCAATATATCACTCTTCATAAAAAAATTTGAAGAACTTATCAAGAAAGCTATGTTTTCCTCTCCCTTTCTCATACCCAATTGTTGATAACCTTGGCTTTTTCCTTTTCATTTTCATGTTTTGTAGCTATTTACCCAAGGCATACTGGAAATGTTTTTCATGTAATAGCCAATAGGATGCCATATTTATTATTTATTCACAAAGTTCATTTGTTGTTTGCAGTCTGTTGCCACATTTTTCAATCAGGTTATGGTAGCAATAGGAGAAAATACCGTGGGCCCTGGTGTGGTGTTTTTTTTTTTTAAGATTTTAAATAAAAATCTTTGTGATAATGTGGTTTGCTTTGAACCTTTTTTTTTTCAAATAAGCTGGATTCTGTTTTTTACATTTTTGTTTTGTTTGTGATATGTGTATTGAATTATGCAGGTTTTGGTTGCGAGGAGTTGCAATGGTATATTTGTATATATTTTTTACTTCAGTAGAGGTAGCTTGACATTGAGTTTAGGGAATCTGCTAATGAACAGGGACGGAGGTAATGGAATTTTCTAAAGTTAATATATTTCTTGTAGTACTTGTTAGAATTCTAAAGATTAAATGGTTTATTTTGATATTGTTTGTAGAATGATTGAAGTCATATCGGGTTGAAAGCTAAGCCACTGTGTAGATAGCCAGACGATCGTTGAAGGTTGAAGACTGAGAAAGCATTTAGGATTTCTTATTTAAATCTTGTATTAGGATCTTTTTTCATGTACTGTTGTAGAATGTATATATAAATACAATATTAAGATTTCATTTTGTGTATGCAAATGTAAAAGACAAATATTAAAGTTTCTAAAATAATATTAATTTTATTGA

mRNA sequence

ATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGACGATACAAAGATATGGTGTACATATCATTCAGGAAAGAAATTCTGTGTATTATATTCATGTGTTTATTCAAGATATTTCTAAAGGTCATTTTCTACTAGAGGAGGATGATAAGTTTCTAAATAAGGAGGAACGTCAAGCCCTTGCTGCAGCTGATATAGATGCTGTCAAGGATGCCATTGCTACTATTGAGGTCTCTAGGAAGACTATTCCAACTTACCCTGAATCAAGGAATCCAATATTTAAGTCTCTATCAACTATGGAAGGAAGTTGCATTACGTCAGAGAGAGGTAGTTACAACATCAAATACGTAACATTTATGATCGTGAACATAAGGAAGCTATTTACCCAAGGCATACTGGAAATGTTTTTCATGTTTTGGTTGCGAGGAGTTGCAATGCTTGACATTGAGTTTAGGGAATCTGCTAATGAACAGGGACGGAGAATGATTGAAGTCATATCGGGTTGAAAGCTAAGCCACTGTGTAGATAGCCAGACGATCGTTGAAGGTTGAAGACTGAGAAAGCATTTAGGATTTCTTATTTAAATCTTGTATTAGGATCTTTTTTCATGTACTGTTGTAGAATGTATATATAAATACAATATTAAGATTTCATTTTGTGTATGCAAATGTAAAAGACAAATATTAAAGTTTCTAAAATAATATTAATTTTATTGA

Coding sequence (CDS)

ATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGACGATACAAAGATATGGTGTACATATCATTCAGGAAAGAAATTCTGTGTATTATATTCATGTGTTTATTCAAGATATTTCTAAAGGTCATTTTCTACTAGAGGAGGATGATAAGTTTCTAAATAAGGAGGAACGTCAAGCCCTTGCTGCAGCTGATATAGATGCTGTCAAGGATGCCATTGCTACTATTGAGGTCTCTAGGAAGACTATTCCAACTTACCCTGAATCAAGGAATCCAATATTTAAGTCTCTATCAACTATGGAAGGAAGTTGCATTACGTCAGAGAGAGGTAGTTACAACATCAAATACGTAACATTTATGATCGTGAACATAAGGAAGCTATTTACCCAAGGCATACTGGAAATGTTTTTCATGTTTTGGTTGCGAGGAGTTGCAATGCTTGACATTGAGTTTAGGGAATCTGCTAATGAACAGGGACGGAGAATGATTGAAGTCATATCGGGTTGA

Protein sequence

MANIIVAQLLYLDAIDPNKTIQRYGVHIIQERNSVYYIHVFIQDISKGHFLLEEDDKFLNKEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSYNIKYVTFMIVNIRKLFTQGILEMFFMFWLRGVAMLDIEFRESANEQGRRMIEVISG
Homology
[Close]
BLAST of MELO3C031967 vs. NCBI nr
Match: KAA0037113.1 (hypothetical protein E6C27_scaffold379G00140 [Cucumis melo var. makuwa] >TYK13963.1 hypothetical protein E5676_scaffold832G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-29
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 59  LNKEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY 118
           + +EERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY
Sbjct: 23  VQEEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY 82

Query: 119 NIKYVTFMIVNIRKL 134
           NIKYVTFMIVNIRK+
Sbjct: 83  NIKYVTFMIVNIRKV 97

[Close]
BLAST of MELO3C031967 vs. NCBI nr
Match: XP_016899131.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 232 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 291

[Close]
BLAST of MELO3C031967 vs. NCBI nr
Match: KAA0048935.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 261 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 320

[Close]
BLAST of MELO3C031967 vs. NCBI nr
Match: XP_031737698.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 234 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 293

[Close]
BLAST of MELO3C031967 vs. NCBI nr
Match: XP_008437978.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo] >TYK17633.1 U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 232 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 291

[Close]
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match: A0A5D3CQ23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001670 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 59  LNKEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY 118
           + +EERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY
Sbjct: 23  VQEEERQALAAADIDAVKDAIATIEVSRKTIPTYPESRNPIFKSLSTMEGSCITSERGSY 82

Query: 119 NIKYVTFMIVNIRKL 134
           NIKYVTFMIVNIRK+
Sbjct: 83  NIKYVTFMIVNIRKV 97

[Close]
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match: A0A5D3D0C0 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005040 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-13
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 232 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 291

[Close]
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match: A0A5A7U5M4 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001550 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-13
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 261 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 320

[Close]
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match: A0A0A0L417 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121010 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-13
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 234 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 293

[Close]
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match: A0A1S3AVD0 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483235 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-13
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 42  IQDISK-GHFLLEEDDKFLNK-------EERQALAAADIDAVKDAIATIEVSRKTIPTYP 99
           IQ + K GHFL EEDDKFL K       EERQALAAAD DA KDAIAT EVSRKT+PTYP
Sbjct: 232 IQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTYP 291

The following BLAST results are available for this feature:
BLAST of MELO3C031967 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037113.12.9e-2994.67hypothetical protein E6C27_scaffold379G00140 [Cucumis melo var. makuwa] >TYK1396... [more]
XP_016899131.11.9e-1272.31PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cu... [more]
KAA0048935.11.9e-1272.31U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucumis melo ... [more]
XP_031737698.11.9e-1272.31U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucumis sativ... [more]
XP_008437978.11.9e-1272.31PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cu... [more]
BLAST of MELO3C031967 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CQ231.4e-2994.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D0C09.1e-1372.31U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel... [more]
A0A5A7U5M49.1e-1372.31U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel... [more]
A0A0A0L4179.1e-1372.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121010 PE=4 SV=1[more]
A0A1S3AVD09.1e-1372.31U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel... [more]
BLAST of MELO3C031967 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031967.1MELO3C031967.1mRNA