MELO3C031958 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031958
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr09: 4743792 .. 4744100 (-)
RNA-Seq Expression	MELO3C031958
Synteny	MELO3C031958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACAGCCATTATGTCATCGTCATATCCACGTAATAATTTTATGGAGACGAACGCTATATTGCTCGAGCTTGAGGACGATTTAGATAACATGGCGGGAGGGTCGTCGTCTGTGGGCGACAATACAGGTGAGTCTAAGAATTTTCTTCATTTTAACTTACGATTATTTCATGTTCTTTTTTCTAACATTATATGTTATTATCGATTTATTGAGAATGATCTTCTTCTCAACAACCTGCGACTCCGACTCCTAGGAGACGTGCACAATCTCGACTCTTGGAGTTAGAGCACCACGTTGCAATAAATG

mRNA sequence

ATGTCCACAGCCATTATGTCATCGTCATATCCACGTAATAATTTTATGGAGACGAACGCTATATTGCTCGAGCTTGAGGACGATTTAGATAACATGGCGGGAGGGTCGTCGTCTGTGGGCGACAATACAGGTGAGTCTTCTTCTCAACAACCTGCGACTCCGACTCCTAGGAGACGTGCACAATCTCGACTCTTGGAGTTAGAGCACCACGTTGCAATAAATG

Coding sequence (CDS)

ATGTCCACAGCCATTATGTCATCGTCATATCCACGTAATAATTTTATGGAGACGAACGCTATATTGCTCGAGCTTGAGGACGATTTAGATAACATGGCGGGAGGGTCGTCGTCTGTGGGCGACAATACAGGTGAGTCTTCTTCTCAACAACCTGCGACTCCGACTCCTAGGAGACGTGCACAATCTCGACTCTTGGAGTTAGAGCACCACGTTGCAATAAAT

Protein sequence

MSTAIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRRRAQSRLLELEHHVAIN

Homology

[Close]

BLAST of MELO3C031958 vs. NCBI nr
Match: KAA0038961.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-22
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MST--AIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRR 60
           MST   IMSSSY RNNFMET+A+ LE E+DLDN+AGGSSS+GDNT  SSSQQPATPTPRR
Sbjct: 100 MSTLYTIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRR 159

Query: 61  RAQSRLLELEHHVAIN 75
           RAQSRLLELE HVAIN
Sbjct: 160 RAQSRLLELERHVAIN 175

[Close]

BLAST of MELO3C031958 vs. NCBI nr
Match: KAA0032327.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 5   IMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPA--TPTPRRRAQS 64
           IMSSSYPRNNFMET+AI LE EDDL N+AGGSSSV DNT  SSSQQPA  TPTPRRRAQS
Sbjct: 168 IMSSSYPRNNFMETDAIFLEFEDDLYNIAGGSSSVDDNTTRSSSQQPATPTPTPRRRAQS 227

Query: 65  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 228 RLLELECHVAIN 239

[Close]

BLAST of MELO3C031958 vs. NCBI nr
Match: TYK15043.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   TAIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRRRAQS 62
           TAIMSSSYPRNNFMET+A+ LE EDDLDN+ G S SVGDNTG SSSQQPATPT RR AQS
Sbjct: 253 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTG-SSSQQPATPTLRRCAQS 312

Query: 63  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 313 RLLELERHVAIN 323

[Close]

BLAST of MELO3C031958 vs. NCBI nr
Match: TYJ99419.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 5   IMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPA--TPTPRRRAQS 64
           IMSSSYPRNNFMET+AI LE EDDL N+AGGSSSV DNT  SSSQQPA  TPTPRRRAQS
Sbjct: 165 IMSSSYPRNNFMETDAIFLEFEDDLYNIAGGSSSVDDNTTRSSSQQPATPTPTPRRRAQS 224

Query: 65  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 225 RLLELECHVAIN 236

[Close]

BLAST of MELO3C031958 vs. NCBI nr
Match: KAA0054221.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   TAIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRRRAQS 62
           TAIMSSSYPRNNFMET+A+ LE EDDLDN+ G S SVGDNTG SSSQQPATPT RR AQS
Sbjct: 240 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTG-SSSQQPATPTLRRCAQS 299

Query: 63  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 300 RLLELERHVAIN 310

[Close]

BLAST of MELO3C031958 vs. ExPASy TrEMBL
Match: A0A5A7TBG7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00370 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MST--AIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRR 60
           MST   IMSSSY RNNFMET+A+ LE E+DLDN+AGGSSS+GDNT  SSSQQPATPTPRR
Sbjct: 100 MSTLYTIMSSSYQRNNFMETDAMFLEFENDLDNIAGGSSSLGDNTAGSSSQQPATPTPRR 159

Query: 61  RAQSRLLELEHHVAIN 75
           RAQSRLLELE HVAIN
Sbjct: 160 RAQSRLLELERHVAIN 175

[Close]

BLAST of MELO3C031958 vs. ExPASy TrEMBL
Match: A0A5D3CT09 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00870 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.6e-21
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   TAIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRRRAQS 62
           TAIMSSSYPRNNFMET+A+ LE EDDLDN+ G S SVGDNTG SSSQQPATPT RR AQS
Sbjct: 253 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTG-SSSQQPATPTLRRCAQS 312

Query: 63  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 313 RLLELERHVAIN 323

[Close]

BLAST of MELO3C031958 vs. ExPASy TrEMBL
Match: A0A5A7SSE5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001860 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.6e-21
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 5   IMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPA--TPTPRRRAQS 64
           IMSSSYPRNNFMET+AI LE EDDL N+AGGSSSV DNT  SSSQQPA  TPTPRRRAQS
Sbjct: 168 IMSSSYPRNNFMETDAIFLEFEDDLYNIAGGSSSVDDNTTRSSSQQPATPTPTPRRRAQS 227

Query: 65  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 228 RLLELECHVAIN 239

[Close]

BLAST of MELO3C031958 vs. ExPASy TrEMBL
Match: A0A5A7UL05 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001630 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.6e-21
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   TAIMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPATPTPRRRAQS 62
           TAIMSSSYPRNNFMET+A+ LE EDDLDN+ G S SVGDNTG SSSQQPATPT RR AQS
Sbjct: 240 TAIMSSSYPRNNFMETDAMFLEFEDDLDNITGASLSVGDNTG-SSSQQPATPTLRRCAQS 299

Query: 63  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 300 RLLELERHVAIN 310

[Close]

BLAST of MELO3C031958 vs. ExPASy TrEMBL
Match: A0A5D3BKF1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00050 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.6e-21
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 5   IMSSSYPRNNFMETNAILLELEDDLDNMAGGSSSVGDNTGESSSQQPA--TPTPRRRAQS 64
           IMSSSYPRNNFMET+AI LE EDDL N+AGGSSSV DNT  SSSQQPA  TPTPRRRAQS
Sbjct: 165 IMSSSYPRNNFMETDAIFLEFEDDLYNIAGGSSSVDDNTTRSSSQQPATPTPTPRRRAQS 224

Query: 65  RLLELEHHVAIN 75
           RLLELE HVAIN
Sbjct: 225 RLLELECHVAIN 236

The following BLAST results are available for this feature:

BLAST of MELO3C031958 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038961.1	5.5e-22	81.58	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0032327.1	1.8e-20	84.72	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK15043.1	1.8e-20	83.33	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ99419.1	1.8e-20	84.72	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0054221.1	1.8e-20	83.33	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031958 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBG7	2.7e-22	81.58	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CT09	8.6e-21	83.33	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SSE5	8.6e-21	84.72	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UL05	8.6e-21	83.33	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BKF1	8.6e-21	84.72	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C031958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031958.1	MELO3C031958.1	mRNA