MELO3C031902.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031902.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr06: 31128780 .. 31129013 (-)
RNA-Seq Expression	MELO3C031902.jh1
Synteny	MELO3C031902.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAATATCAAGAACTCGCCGGCGACGATATGGGTTTCCTAGCTGTGGGTCTCCATCGCTATGGGTCTCCTCGCCATGGGTCTCCGTCGTCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCGTGCGTCGTTGCTGTCGTTCGTGAGGGGAATGTGCGTGATGAAGGAAAGGGATGGATTTTGAAGAAGAAAAGTGAGAGATTTTG

mRNA sequence

AAAAAAGAAATATCAAGAACTCGCCGGCGACGATATGGGTTTCCTAGCTGTGGGTCTCCATCGCTATGGGTCTCCTCGCCATGGGTCTCCGTCGTCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCGTGCGTCGTTGCTGTCGTTCGTGAGGGGAATGTGCGTGATGAAGGAAAGGGATGGATTTTGAAGAAGAAAAGTGAGAGATTTTG

Coding sequence (CDS)

ATGGGTTTCCTAGCTGTGGGTCTCCATCGCTATGGGTCTCCTCGCCATGGGTCTCCGTCGTCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCGTGCGTCGTTGCTGTCGTTCGTGAGGGGAATGTGCGTGATGAAGGAAAGGGATGGATTTTGAAGAAGAAAAGTGAGAGATTT

Protein sequence

MGFLAVGLHRYGSPRHGSPSSRRKDVEMRRMGLRLGFSSCVVAVVREGNVRDEGKGWILKKKSERF

Homology

[Close]

BLAST of MELO3C031902.jh1 vs. NCBI nr
Match: KAA0034002.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 2.02e-30
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MGFLAVGLHRYGSPRHGSPSSRRKDVEMRRMGLRLGFSSCVVAVVREGNVRDEGKGWILK 60
          MG+LAVGLHRYGSPRHGSPSSRRKD+EMRRMGLRLGFSSCVV VV EGNV DEGKG ILK
Sbjct: 1  MGYLAVGLHRYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVVVLEGNVHDEGKGGILK 60

Query: 61 KKS 63
          K++
Sbjct: 61 KEN 63

[Close]

BLAST of MELO3C031902.jh1 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 9.21e-09
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1   MGFLAVGLHRYGSPRHGSPSSRRKDVEMRRMGLRLGFSSCVV 42
           +G   VGLHRY     GSP SRRKD+EMRR+GLRLGFS CV+
Sbjct: 67  IGLFVVGLHRY-----GSPLSRRKDIEMRRIGLRLGFSLCVI 103

[Close]

BLAST of MELO3C031902.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BST2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00060 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 9.79e-31
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MGFLAVGLHRYGSPRHGSPSSRRKDVEMRRMGLRLGFSSCVVAVVREGNVRDEGKGWILK 60
          MG+LAVGLHRYGSPRHGSPSSRRKD+EMRRMGLRLGFSSCVV VV EGNV DEGKG ILK
Sbjct: 1  MGYLAVGLHRYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVVVLEGNVHDEGKGGILK 60

Query: 61 KKS 63
          K++
Sbjct: 61 KEN 63

[Close]

BLAST of MELO3C031902.jh1 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.46e-09
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1   MGFLAVGLHRYGSPRHGSPSSRRKDVEMRRMGLRLGFSSCVV 42
           +G   VGLHRY     GSP SRRKD+EMRR+GLRLGFS CV+
Sbjct: 67  IGLFVVGLHRY-----GSPLSRRKDIEMRRIGLRLGFSLCVI 103

The following BLAST results are available for this feature:

BLAST of MELO3C031902.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034002.1	2.02e-30	87.30	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-...	[more]
KAA0033316.1	9.21e-09	66.67	transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri...	[more]

BLAST of MELO3C031902.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031902.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BST2	9.79e-31	87.30	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7STJ5	4.46e-09	66.67	Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of MELO3C031902.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031902.jh1.t1	MELO3C031902.jh1.t1	mRNA