MELO3C031884 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031884
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 27233798 .. 27234239 (-)
RNA-Seq Expression	MELO3C031884
Synteny	MELO3C031884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATATCGAATGTAAGACTTCATGATGTTGTATGATCCAAAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGATACATAATACGTACGATCTACCTGTTGTACCGACACCAGTTCATAGGGGATGTATTTGAGTGAAAGAAGCTGAACTAGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCTTATGACATAGACATAGAGTCAAACTGGTTATGGTAGTCCAATGATGCCGATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAA

mRNA sequence

CAGATATCGAATGTAAGACTTCATGATGTTGTATGATCCAAAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGATACATAATACGTACGATCTACCTGTTGTACCGACACCAGTTCATAGGGGATGTATTTGAGTGAAAGAAGCTGAACTAGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCTTATGACATAGACATAGAGTCAAACTGGTTATGGTAGTCCAATGATGCCGATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAA

Coding sequence (CDS)

ATGATGCCGATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAA

Protein sequence

MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEVPNRQ

Homology

[Close]

BLAST of MELO3C031884 vs. NCBI nr
Match: KAA0060605.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK02266.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 6.3e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
          MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL
Sbjct: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60

Query: 61 IEVPNRQ 68
          IEVPNRQ
Sbjct: 61 IEVPNRQ 67

[Close]

BLAST of MELO3C031884 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           MM MP FGAGYCD+EV  GYYD+G+ PLSSYMDVGP  SYMHGHGR +GEHNEYLYHEA 
Sbjct: 49  MMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAP 108

Query: 61  IEVPNRQ 68
            +V +RQ
Sbjct: 109 ADVSDRQ 115

[Close]

BLAST of MELO3C031884 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+EV IGYYD+ V PLSSYMDVGP TSYM+GHGR +GEHNEYLYHEA 
Sbjct: 398 MTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAP 457

Query: 61  IEVPNRQ 68
            +V +RQ
Sbjct: 458 TDVSDRQ 464

[Close]

BLAST of MELO3C031884 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M+ MP FG GYCD EV+  YYDSGV P SSYMDVGP TSYMHGH  D+GEHNEYLYHEA 
Sbjct: 117 MIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAP 176

Query: 61  IEVPNRQ 68
            EV +RQ
Sbjct: 177 TEVSDRQ 183

[Close]

BLAST of MELO3C031884 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+EVD GYYD GV   SSYM+VGP  SYMHGHGR +GEHNEYLYHEAL
Sbjct: 49  MTMMPTFGAGYCDSEVDTGYYDVGVGSSSSYMNVGPSASYMHGHGRGYGEHNEYLYHEAL 108

Query: 61  IEVPNR 67
            +V +R
Sbjct: 109 ADVSDR 114

[Close]

BLAST of MELO3C031884 vs. ExPASy TrEMBL
Match: A0A5A7V414 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00670 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-33
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
          MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL
Sbjct: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60

Query: 61 IEVPNRQ 68
          IEVPNRQ
Sbjct: 61 IEVPNRQ 67

[Close]

BLAST of MELO3C031884 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           MM MP FGAGYCD+EV  GYYD+G+ PLSSYMDVGP  SYMHGHGR +GEHNEYLYHEA 
Sbjct: 49  MMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAP 108

Query: 61  IEVPNRQ 68
            +V +RQ
Sbjct: 109 ADVSDRQ 115

[Close]

BLAST of MELO3C031884 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.2e-22
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+EV IGYYD+ V PLSSYMDVGP TSYM+GHGR +GEHNEYLYHEA 
Sbjct: 398 MTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAP 457

Query: 61  IEVPNRQ 68
            +V +RQ
Sbjct: 458 TDVSDRQ 464

[Close]

BLAST of MELO3C031884 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.8e-21
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M+ MP FG GYCD EV+  YYDSGV P SSYMDVGP TSYMHGH  D+GEHNEYLYHEA 
Sbjct: 117 MIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAP 176

Query: 61  IEVPNRQ 68
            EV +RQ
Sbjct: 177 TEVSDRQ 183

[Close]

BLAST of MELO3C031884 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+EVD GYYD GV   SSYM+VGP  SYMHGHGR +GEHNEYLYHEAL
Sbjct: 49  MTMMPTFGAGYCDSEVDTGYYDVGVGSSSSYMNVGPSASYMHGHGRGYGEHNEYLYHEAL 108

Query: 61  IEVPNR 67
            +V +R
Sbjct: 109 ADVSDR 114

The following BLAST results are available for this feature:

BLAST of MELO3C031884 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060605.1	6.3e-33	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	1.3e-22	74.63	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	1.9e-21	74.63	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	1.6e-20	73.13	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK16354.1	2.1e-20	72.73	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of MELO3C031884 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V414	3.0e-33	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	6.4e-23	74.63	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	9.2e-22	74.63	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	7.8e-21	73.13	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CZG9	1.0e-20	72.73	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of MELO3C031884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031884.1	MELO3C031884.1	mRNA