MELO3C031842 (gene) Melon (DHL92) v4

Overview
NameMELO3C031842
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr06: 22968266 .. 22968473 (-)
RNA-Seq ExpressionMELO3C031842
SyntenyMELO3C031842
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGAGAAAGCTATGAGTAGGGAGGACGCGATAGCGGCGCAGGTGATTGAGCTTATGGAGGCCATCCTAAACCTTACTATGGTGGAGAAGAGTAAGTGCGTCATGATAGTGAATCAGAAGGTGTCAATCATAAGAAGTTTTATCAAGATGTCTGATCCAATGAAGATTGCTTACTGCAGGGTCTTTCTTGGCAGTGACCCGTGA

mRNA sequence

ATGGGCGGAGAAAGCTATGAGTAGGGAGGACGCGATAGCGGCGCAGGTGATTGAGCTTATGGAGGCCATCCTAAACCTTACTATGGTGGAGAAGAGTAAGTGCGTCATGATAGTGAATCAGAAGGTGTCAATCATAAGAAGTTTTATCAAGATGTCTGATCCAATGAAGATTGCTTACTGCAGGGTCTTTCTTGGCAGTGACCCGTGA

Coding sequence (CDS)

ATGAGTAGGGAGGACGCGATAGCGGCGCAGGTGATTGAGCTTATGGAGGCCATCCTAAACCTTACTATGGTGGAGAAGAGTAAGTGCGTCATGATAGTGAATCAGAAGGTGTCAATCATAAGAAGTTTTATCAAGATGTCTGATCCAATGAAGATTGCTTACTGCAGGGTCTTTCTTGGCAGTGACCCGTGA

Protein sequence

MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLGSDP
Homology
[Close]
BLAST of MELO3C031842 vs. NCBI nr
Match: KAA0038274.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           MSREDA+AAQVIEL+EAILNLTM EKS CV++VNQKVS++RSFIKMSD MK AYCR+ LG
Sbjct: 114 MSREDAMAAQVIELIEAILNLTMAEKSNCVVLVNQKVSLMRSFIKMSDSMKAAYCRILLG 173

Query: 61  SD 63
            D
Sbjct: 174 GD 175

[Close]
BLAST of MELO3C031842 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           MS ED +AAQVIEL++AI NLTM EKSKCVM+VNQKVS++RSFIKM D MK AYCRV LG
Sbjct: 130 MSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLG 189

Query: 61  SDP 64
            DP
Sbjct: 190 GDP 192

[Close]
BLAST of MELO3C031842 vs. NCBI nr
Match: KAA0046506.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 9.5e-15
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           ++REDA+ AQVIE M++I +LTM EKSKCV+IV +KVS++R+FIKMSDPMK+AYCRV LG
Sbjct: 145 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 204

Query: 61  SDP 64
            DP
Sbjct: 205 YDP 207

[Close]
BLAST of MELO3C031842 vs. NCBI nr
Match: TYK28753.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 9.5e-15
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           ++REDA+ AQVIE M++I +LTM EKSKCV+IV +KVS++R+FIKMSDPMK+AYCRV LG
Sbjct: 137 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 196

Query: 61  SDP 64
            DP
Sbjct: 197 YDP 199

[Close]
BLAST of MELO3C031842 vs. NCBI nr
Match: TYJ98397.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 4   EDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLGSD 63
           EDA+AAQVIELMEAI NLTM EKSK +MIVNQKVS++RSFIKM D MK+AY RV LGSD
Sbjct: 98  EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 156

[Close]
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match: A0A5A7T479 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001300 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-17
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           MSREDA+AAQVIEL+EAILNLTM EKS CV++VNQKVS++RSFIKMSD MK AYCR+ LG
Sbjct: 114 MSREDAMAAQVIELIEAILNLTMAEKSNCVVLVNQKVSLMRSFIKMSDSMKAAYCRILLG 173

Query: 61  SD 63
            D
Sbjct: 174 GD 175

[Close]
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-16
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           MS ED +AAQVIEL++AI NLTM EKSKCVM+VNQKVS++RSFIKM D MK AYCRV LG
Sbjct: 130 MSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLG 189

Query: 61  SDP 64
            DP
Sbjct: 190 GDP 192

[Close]
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match: A0A5D3DYD1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001030 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           ++REDA+ AQVIE M++I +LTM EKSKCV+IV +KVS++R+FIKMSDPMK+AYCRV LG
Sbjct: 137 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 196

Query: 61  SDP 64
            DP
Sbjct: 197 YDP 199

[Close]
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match: A0A5A7TWZ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00010 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1   MSREDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLG 60
           ++REDA+ AQVIE M++I +LTM EKSKCV+IV +KVS++R+FIKMSDPMK+AYCRV LG
Sbjct: 145 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 204

Query: 61  SDP 64
            DP
Sbjct: 205 YDP 207

[Close]
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match: A0A5D3BGZ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001460 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 4   EDAIAAQVIELMEAILNLTMVEKSKCVMIVNQKVSIIRSFIKMSDPMKIAYCRVFLGSD 63
           EDA+AAQVIELMEAI NLTM EKSK +MIVNQKVS++RSFIKM D MK+AY RV LGSD
Sbjct: 98  EDAMAAQVIELMEAISNLTMAEKSKGIMIVNQKVSLMRSFIKMFDLMKVAYYRVILGSD 156

The following BLAST results are available for this feature:
BLAST of MELO3C031842 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038274.15.9e-1779.03retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048148.11.1e-1576.19retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... [more]
KAA0046506.19.5e-1569.84retrotransposon protein [Cucumis melo var. makuwa][more]
TYK28753.19.5e-1569.84retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ98397.11.0e-1379.66retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C031842 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T4792.9e-1779.03Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TYU45.4e-1676.19Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DYD14.6e-1569.84Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TWZ44.6e-1569.84Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BGZ95.1e-1479.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C031842 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031842.1MELO3C031842.1mRNA