MELO3C031840 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031840
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Zinc finger BED domain-containing protein RICESLEEPER 1
Location	chr06: 7888545 .. 7890580 (-)
RNA-Seq Expression	MELO3C031840
Synteny	MELO3C031840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAACAACTAATAGAACATTTCTCAAATTGAAAGTTATCACCGATAAGGGTATAAAAAAATCGAATCGAACTGATGACCCGAATCGAACCAATTCAGTTCAGTTCGAATTGGGCCAGTTTCTAACAACAGTGTTATCGAACCGAACCGAACTGATTTGATTCCAGTCGGGTCGGGTCTAAAATTAATCGGTTAGGTTAAAAATAAGATAATTTTTTGTCTGCTCGCCTATTCGTGTATTTCGTCGCATTCCGTCTTCGTCTACTGCTCTGCATTTCGTTTTCGTGTACATTTCGTTTTCACCACTTCATTTCTTCACTTCTTCCATTCTCTGTTCGTCATTTTGTCTTCGCCCCATACCCCTGACTGTTCGTCATTTCGTTTTCGCCCTTCGCCCTTTCGTTGTCACTCGCCAGGTATCATTTTCACTATTTTCCTATCTCTTTGCTTTGTTGTCTATGAGTTTTTGTTGTTTAGAACACTATCCTCGAATAACTTCACTGGGTTTTGGTTGGAAGGAATTTTGGTTTAATTTTGTTATGAGTTTTGATTTCTTGAAAGTAGAAATAGTGTTTAATTTAGGATATGGCGTTGATACTGCCACTGAAAATAATGCCCAGGTGATAGTATTGATGTGTAAGTTATAATGTATTTGTTCATTAGTTTTCATTTAATATACTTGTTCATGTAATGTGAATTGGGGTATGACTACAGTTGTAAATTACAATAAGAGCAATAATCTTCTTTGGCTGCTATAGTTTTATTGTCATTGTGTTTGTCAATTTACAGAGGCTAATAGTTGAGGCCTGGGAGTGACACATGTGTTTGTTCCTTGTTTTTTAAGCCATTAACCCCCTTAATTTTATGCTATAATTTTATTGTCAATTAGACATATTGGAGCTGTGGCAGTATCAAATTCCATAATAGGAATGAGCCAAAGTTTCCTACCGTAGGACTATACAAGTTCTACTCTCTGAAACTTCACTTTCTACAAATTTTACCCCAGTGTGAACAAAGTTCTTATTATTTGTTTACTATTATCATCTTCTTCTTTCATGATTTTTAGAGTTGGGTTCTTATTGAACGTTTTCAATTCATCAGTAATCATTACATGTTTCGATCAGGTAGTCATTTTATTGATCTTAGAGCGATCTAACTTATATTAATTGACATCAAAATGGTGTTGAACGACATAGTGCACTTTGTTCTTCCCGTCCAAACATTTTTCTTTTATATATATATAGTTATTTTGCTCTACGTGTAATTATCAATTTGTTTCCATCTTATGATGACATTGTTTTATTTGTCGTTATTTTGCTATATGTGTAATTATCAATTTGTTTCCATCTCTTATGACGACATTGTTTTATTTGTCGTTATTTTTTCATGTGTGTAATTATCAATTTGTTTCCATCTTATGACAACGTTGTTTTATTTGTTGTCTCAGTCAAAATAATTTCACCTTTGGCTTTGTTTTCTATAGTGGATGTTGTTCAAAAAATCTTCTACTTTTGTTGTTCAATGATCATTAGTTAAAATTTGAGTGTTTTTTTCTGTGTGTTTTATTTGATGATAATTAGGATGACTTCATTCTCTGTAGACGAGACTTCAAAATAGAGTTGTTCTAGTCCAGTGTTAGGAAAAAGAAAATCGATTAAACTACCATCATCGGTATGGGAACATTTTATAAAAGTAGAAGGATGTGATCCTAAATATCCTAGGGCTGCTTGTAAACATTGTGGGGCTTCCTATGTTTGTGATTCCAAAAGAAATGGTACCACTAATTTAAAAAGACATTTAGAGAAATGTAAGATGTATGTAAATCCATTGGAAGATAATGTTGAAGGAGAGGGAGATTCTGAAAGTAGTATGATGGCTACATCCTTCACTCAAGAAAATTGTAGAACAATGTTTGCTAAGATGGTTATCTTGGATGAATTGTCATTTAAGTTTGTAGAAAGTGAAGGGTTTCACCAATTTTGCGGGCATTAAATCCCAAGTTTATGATTCCATCAAGAGTAATCGTTGCAAATGA

mRNA sequence

ATGATAACAACTAATAGAACATTTCTCAAATTGAAAGTTATCACCGATAAGGGTATAAAAAAATCGAATCGAACTGATGACCCGAATCGAACCAATTCAGTTCAGTTCGAATTGGGCCAGTTTCTAACAACAATAATTTTTTGTCTGCTCGCCTATTCGTGTATTTCGTCGCATTCCGTCTTCGTCTACTGCTCTGCATTTCGTTTTCGTGTACATTTCGTTTTCACCACTTCATTTCTTCACTTCTTCCATTCTCTGTTCGTCATTTTGTCTTCGCCCCATACCCCTGACTGTTCGTCATTTCGTTTTCGCCCTTCGCCCTTTCGTTGTCACTCGCCAGGATATGGCGTTGATACTGCCACTGAAAATAATGCCCAGACATATTGGAGCTGTGGCAGTATCAAATTCCATAATAGGAATGAGCCAAAGTTTCCTACCAGTTGGGTTCTTATTGAACGTTTTCAATTCATCAGTAATCATTACATGTTTCGATCAGGATGTGATCCTAAATATCCTAGGGCTGCTTGTAAACATTGTGGGGCTTCCTATGTTTGTGATTCCAAAAGAAATGGTACCACTAATTTAAAAAGACATTTAGAGAAATGTAAGATGTATGTAAATCCATTGGAAGATAATGTTGAAGGAGAGGGAGATTCTGAAAGTAGTATGATGGCTACATCCTTCACTCAAGAAAATTGTAGAACAATGTTTGCTAAGATGAAAGTGAAGGGTTTCACCAATTTTGCGGGCATTAAATCCCAAGTTTATGATTCCATCAAGAGTAATCGTTGCAAATGA

Coding sequence (CDS)

ATGATAACAACTAATAGAACATTTCTCAAATTGAAAGTTATCACCGATAAGGGTATAAAAAAATCGAATCGAACTGATGACCCGAATCGAACCAATTCAGTTCAGTTCGAATTGGGCCAGTTTCTAACAACAATAATTTTTTGTCTGCTCGCCTATTCGTGTATTTCGTCGCATTCCGTCTTCGTCTACTGCTCTGCATTTCGTTTTCGTGTACATTTCGTTTTCACCACTTCATTTCTTCACTTCTTCCATTCTCTGTTCGTCATTTTGTCTTCGCCCCATACCCCTGACTGTTCGTCATTTCGTTTTCGCCCTTCGCCCTTTCGTTGTCACTCGCCAGGATATGGCGTTGATACTGCCACTGAAAATAATGCCCAGACATATTGGAGCTGTGGCAGTATCAAATTCCATAATAGGAATGAGCCAAAGTTTCCTACCAGTTGGGTTCTTATTGAACGTTTTCAATTCATCAGTAATCATTACATGTTTCGATCAGGATGTGATCCTAAATATCCTAGGGCTGCTTGTAAACATTGTGGGGCTTCCTATGTTTGTGATTCCAAAAGAAATGGTACCACTAATTTAAAAAGACATTTAGAGAAATGTAAGATGTATGTAAATCCATTGGAAGATAATGTTGAAGGAGAGGGAGATTCTGAAAGTAGTATGATGGCTACATCCTTCACTCAAGAAAATTGTAGAACAATGTTTGCTAAGATGAAAGTGAAGGGTTTCACCAATTTTGCGGGCATTAAATCCCAAGTTTATGATTCCATCAAGAGTAATCGTTGCAAATGA

Protein sequence

MITTNRTFLKLKVITDKGIKKSNRTDDPNRTNSVQFELGQFLTTIIFCLLAYSCISSHSVFVYCSAFRFRVHFVFTTSFLHFFHSLFVILSSPHTPDCSSFRFRPSPFRCHSPGYGVDTATENNAQTYWSCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKRNGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFAGIKSQVYDSIKSNRCK

Homology

[Close]

BLAST of MELO3C031840 vs. NCBI nr
Match: TYK06161.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 9.1e-35
Identity = 78/125 (62.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCG SY CDSKR
Sbjct: 13  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGTSYACDSKR 72

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESS+MA SFTQENCR M A+M +     F 
Sbjct: 73  NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSLMAASFTQENCRKMLARMVILDELPFK 128

Query: 250 GIKSQ 255
            ++S+
Sbjct: 133 FVESE 128

[Close]

BLAST of MELO3C031840 vs. NCBI nr
Match: KAA0026183.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-34
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGASY CDSKR
Sbjct: 41  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGASYACDSKR 100

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSES++M  SFTQENCR M A+M +     F 
Sbjct: 101 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESNLMTASFTQENCRKMLARMVILDELPFK 156

Query: 250 GIKSQ 255
            ++S+
Sbjct: 161 FVESE 156

[Close]

BLAST of MELO3C031840 vs. NCBI nr
Match: TYK30776.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-34
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGASY CDSKR
Sbjct: 41  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGASYACDSKR 100

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSES++M  SFTQENCR M A+M +     F 
Sbjct: 101 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESNLMTASFTQENCRKMLARMVILDELPFK 156

Query: 250 GIKSQ 255
            ++S+
Sbjct: 161 FVESE 156

[Close]

BLAST of MELO3C031840 vs. NCBI nr
Match: ACX85638.1 (putative transposase [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-34
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGASY CDSKR
Sbjct: 13  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGASYACDSKR 72

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSES++M  SFTQENCR M A+M +     F 
Sbjct: 73  NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESNLMTASFTQENCRKMLARMVILDELPFK 128

Query: 250 GIKSQ 255
            ++S+
Sbjct: 133 FVESE 128

[Close]

BLAST of MELO3C031840 vs. NCBI nr
Match: KAA0055978.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 2.7e-34
Identity = 76/113 (67.26%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCG SY CDSKR
Sbjct: 13  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGISYACDSKR 72

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKV 243
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESS+MA SFTQENCR M A+M +
Sbjct: 73  NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSLMAASFTQENCRKMLARMVI 116

[Close]

BLAST of MELO3C031840 vs. ExPASy TrEMBL
Match: A0A5D3C2L4 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00130 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.4e-35
Identity = 78/125 (62.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCG SY CDSKR
Sbjct: 13  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGTSYACDSKR 72

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESS+MA SFTQENCR M A+M +     F 
Sbjct: 73  NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSLMAASFTQENCRKMLARMVILDELPFK 128

Query: 250 GIKSQ 255
            ++S+
Sbjct: 133 FVESE 128

[Close]

BLAST of MELO3C031840 vs. ExPASy TrEMBL
Match: A0A5A7SNJ1 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G001460 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-35
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGASY CDSKR
Sbjct: 41  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGASYACDSKR 100

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSES++M  SFTQENCR M A+M +     F 
Sbjct: 101 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESNLMTASFTQENCRKMLARMVILDELPFK 156

Query: 250 GIKSQ 255
            ++S+
Sbjct: 161 FVESE 156

[Close]

BLAST of MELO3C031840 vs. ExPASy TrEMBL
Match: A0A5D3E4G3 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001240 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-35
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGASY CDSKR
Sbjct: 41  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGASYACDSKR 100

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSES++M  SFTQENCR M A+M +     F 
Sbjct: 101 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESNLMTASFTQENCRKMLARMVILDELPFK 156

Query: 250 GIKSQ 255
            ++S+
Sbjct: 161 FVESE 156

[Close]

BLAST of MELO3C031840 vs. ExPASy TrEMBL
Match: D0UIX2 (Putative transposase OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 9.9e-35
Identity = 77/125 (61.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGASY CDSKR
Sbjct: 13  SCSSPVLGKRKPVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGASYACDSKR 72

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSES++M  SFTQENCR M A+M +     F 
Sbjct: 73  NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESNLMTASFTQENCRKMLARMVILDELPFK 128

Query: 250 GIKSQ 255
            ++S+
Sbjct: 133 FVESE 128

[Close]

BLAST of MELO3C031840 vs. ExPASy TrEMBL
Match: A0A5A7VNA7 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00030 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 77/127 (60.63%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 130 SCGSIKFHNRNEPKFPTSWVLIERFQFISNHYMFRSGCDPKYPRAACKHCGASYVCDSKR 189
           SC S     R   K P+S         +  H++   GCDPKYPRAACKHCGA Y CDSKR
Sbjct: 86  SCSSPMLGKRKSVKPPSS---------VWEHFIKVEGCDPKYPRAACKHCGAPYACDSKR 145

Query: 190 NGTTNLKRHLEKCKMYVNPLEDNVEGEGDSESSMMATSFTQENCRTMFAKMKVKGFTNFA 249
           NGTTNLKRHLEKCK YVNPLEDNVEGEGDSESS+MA SFTQENCR M A+M +     F 
Sbjct: 146 NGTTNLKRHLEKCKKYVNPLEDNVEGEGDSESSLMAASFTQENCRKMLARMVILDELPFK 203

Query: 250 GIKSQVY 257
            ++S+ +
Sbjct: 206 FVESEEF 203

The following BLAST results are available for this feature:

BLAST of MELO3C031840 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06161.1	9.1e-35	62.40	putative transposase [Cucumis melo var. makuwa]	[more]
KAA0026183.1	2.0e-34	61.60	putative transposase [Cucumis melo var. makuwa]	[more]
TYK30776.1	2.0e-34	61.60	putative transposase [Cucumis melo var. makuwa]	[more]
ACX85638.1	2.0e-34	61.60	putative transposase [Cucumis melo]	[more]
KAA0055978.1	2.7e-34	67.26	putative transposase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2L4	4.4e-35	62.40	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287...	[more]
A0A5A7SNJ1	9.9e-35	61.60	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G...	[more]
A0A5D3E4G3	9.9e-35	61.60	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343...	[more]
D0UIX2	9.9e-35	61.60	Putative transposase OS=Cucumis melo OX=3656 PE=4 SV=1	[more]
A0A5A7VNA7	1.3e-34	60.63	Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118...	[more]

BLAST of MELO3C031840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00614	bed5	coord: 162..205 e-value: 4.2E-6 score: 36.3
None	No IPR available	PANTHER	PTHR34396:SF1	OS03G0264950 PROTEIN	coord: 169..242
None	No IPR available	PANTHER	PTHR34396	OS03G0264950 PROTEIN-RELATED	coord: 169..242
IPR003656	Zinc finger, BED-type	PFAM	PF02892	zf-BED	coord: 174..201 e-value: 6.3E-5 score: 22.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031840.1	MELO3C031840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding