MELO3C031832.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031832.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr06: 8218825 .. 8222571 (+)
RNA-Seq Expression	MELO3C031832.jh1
Synteny	MELO3C031832.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCATTTACCGACGGGGAGCATTCGTTGCCTCAGAAATCCTCACTTGGATCAGACGTCTTGGATCCAACTTCTCCTTGGACATGCATGTTTGGGTTTAGCCGATTCGAAGTCCCCTTGCCGCTCCACTTGTTGATTTATCGCTTGTAGTTAGCCTTACTGATTCACGTTTTCCTTTACTGATTCTAGATCAATGCTACACGCCACACTGTTTTGTGGCAATCGGTGCGGGTGGAGCATGGTAGGGAGGTAACACTAGTGTTGTTGTATTTTCTTTATTTATTTTTTTGATAGTCGATGATGAGTACTGCTGTTGTGGACTGAATTTGTTTAACGGATTTGCATTATTTATTTCATTTCTTACAATTTTGGTTGTGATATTTCTTCCTTTCGGTTGAAAAAAAATTCCTGTATGTCTGTTCTCATGTATTTTTCTTGTAAAAACTTTTGCTTCAATTCTTGTAAAAAAAAAATAGTTTGCAATGGTTATTTGTAAAATTTTCTCCTTCAATTCTTCTTTGTTTCTCTCTGTGAGGATCATATCTTTTGGCCCATTCTGCATTTGACTGTTATTTCCATTGACTGCCATTATGTACTTTCTTCTTTGTTTTGTTAATGTCTTCATTGACTCTTGTTATATGGAGAAATATTGGCGGCCCAAACCTACCATTTGTAGATTGTTTTGTCCCTTTAATGTATATGACAATATACCCTTTCTGTGGAAAATAGGGTACTGCCAATGGTTAGGGTTTAACCAAAGTTGTCACTTTTGTATGCTTTTACACTGTCCTTTGTAGAGATTCCCAGACTTTTTTTGTGTATGGTCATTCAAGGCATATTAACTTCCCTTAGACGCCCCTTATATATTCACCTTTCCTCTTTTGTTTTACCATACATTTTTGTGATTTCTATTGTTGTCTTGTTCTATCTTTTGCTACTTTATGTTCGGTTTTGAATTTTTTTCCCATATTTGCATCATTGTCAATTCGTGTTACCCTTCTTCTGCCTTGTTTTGTCTTATGGAATTCCTTTTACAAATCTCTTGTCTGTATGTATGTTTCTGCCTTCTTTTCTCACGTATGTTTGTGTCTTGGTTTCTCACCTACATTCCATATTTCCTTATTTGGTACTCAATTATGTTTTGGTGTATTCTCATGTAAGTTCTTTCCATATTTACATATTTCCATACTCACGTAAATTATCGATATTCACTTTATTTCATGCCTTGCGTGCATTCTTTGTCATTTCATTTGTCTGCTCATATGTTTTGTTCTATGTTTTTCCTACCTCCTCATTGATGTTTCTACGACTATGGAATCTGGTTCAACTTATTGAACCGATTTATTAACTCTGAGAATGCTTAACATATATTTTGAAAAATGATTTTTATGCATAAAAACTATTCTTTTAATAATCATCATTGAATTTTCATTTCGGGTCCTTGCTTCTACGTACAAGGTATGTAATCCTTCCGTTTTAGATTTATTTCTCTTCACATATCCTGCATTTAAATTACTTGACTTGTTTTCGGTGTTTGTTGTATCGTAACTTATTTACTTTTCGTATGCAGAATGTTTGTGGTCATCCCACCCTTGTAAGAGGTATTAAGGATTTGCCTTTGTTGTAGACTCAAATTTCATATTGTAAAGTATGCAATTTCACACTATTTGTAGCGTATAAACTATTGGTTTTGTAATTAATTTTGGTATGGACATTTCATCTATTTAATAAAAAGCATATTATTTTGTATTTTTTCTACGCTTACCAAGTTAGAAATTTGTGTTCGTTTCTTACATGGACATGGAATATAGTTTCTTTCGAATCTTACAACCCCAATGTCAAATTGTTTAGTACGTTTTTTCCTTTCCTACTACCTTATCATACCAATCATATCTGTAAAAGGTGAATTTCGTTCATTGAAACGTTATAGAACGAGGATTATACATATTTTTTGCATAACAATTTTTGAAATATAGTACATTTAAGACATAGTTTACTACACATTTCCCTCACATTATAATACCCGCTTAACTAAGTTGTGAGGAAAATCAAACTTCGGTTCTTAAAAACATGGTTAAGTAGTAATTATACAGTTGCATTTTTAAACAATTTAATCGCTACACCCTTTTAAAAAAGGTTTCAAATAACTTATGTTGTTGAAATAAAAATGAATGGCCGACCCTAATCAAACATTTTTCATATGTTTGATTTTAAAATTTTCGTTTATGTGGAAATTGGAAATTTTTCTTCAATGTGGATCTTTTGACAATGTATATTTTTTAGGAAATTTTTGGTACTTTCATATGGATCAATAAATCCTTATTGGAGTTCTATATGTATTCACATTGGCCCAACGTTAAATGCTCCAAACGTTGGATGCACTAATGATCAACAATAAGTGTATCCCACATACCCCGTCTGATACTAGGCATAGAATTAGGCAGCTTGCGTACTTTCAGATGATACACGAGTCTGATCTTGTGTGTCGACAAAGCACGTATATGGACAGGCGAACATTTGCTATTCTATGCCATATGCCTAGGACTGTAGATGGTCTTTGTTCGACAGAGATTGTCGATGTTGAGGAAATGGTTTCAATGTTCTTGCACATTCTTGTCCATGACGTGAAGAACTGCGTAATTCAGCGAGAATTTGTACAATCAGGTGAGACAGTATCTCGACATTTCAACCTCGTCTTGTTGGTTGTGCGACGTCTCCACAACAAGTTGATAAAGAAACCTGTGTCAATAACAAACAACTGCACAGATCAACGTTGGAAGTGTTTCGAGGTGCGTGTAGTAGAAGTATATTGTATGTTACGCATCAATACAGAAACCTAATGTAGGTGCATTCTTTTAAACTTCTAGAATTGTCTTGGGGCGTTGGACGGGACGTACAACAAGGTCAACATCCCCGCAGCAGATCGCCCTACGTTCAGAACGCGTAAGGGGAAAATTACGACTAATGTACTCGGCGTTTGCAACATTAAAGGGGATTTTGTATATGTCCTCGCCAGTTGAGAAGGATCCGCAGTAGACTCGCGGATTCTACCGGATGCCCTTGCACGACCCAACGGATTGCAAGTGCCAAAGGGTATTTACGATTTTGGTTTTATGAATGAGCCGTTTTGAAAGTGCATATCTAACGTGCATAATCCACGTGTTATTATCTGTGCGATGTGGGTTATCCAAACACTGAGAGATTTCTTGCCCTGTACAGAGGCCAAAGGTACCGCTTGCAAGAGTGGCGTGGTGCTGGAAATGCCCCAACTACTGCAAAGGAATACTTCAACATGAAGCACTCTTCTGCGAGGAATCTGATTGAGCGCGCGTTTGGTCTTCTAAAGGGTCATTGGGAAATACTTCGTGCGAAGTTGTACTATCCCCTTCAAGTGCAGTGTCGCATCATTCTAGCATGTTGCCTGCTGCACAATTTGATAAACAAGGAAATGCCCAATTGCGATGACATTGAAGACTTTGATGAGGAGGAGTCTGCGTACGCCACGACCAACGCTAGAGAACACATTCAGTACATTGAGACCACAAACGAATGGTCTTAATGGCGCGAAAAATTGGCTGAAGCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAAATTAGAACCCTTGCGATTGTATGCTAGTTTAAATGACATGTACTTTGTCCTTTTTCATATCTAATGTATACATGCATGATGTACAACAATAATTATAGGTCATAATATATGTTGTTATTTGTGCTTC

mRNA sequence

ATGGGTTTCATTTACCGACGGGGAGCATTCGTTGCCTCAGAAATCCTCACTTGGATCAGACGTCTTGGATCCAACTTCTCCTTGGACATGCATATCAATGCTACACGCCACACTGTTTTGTGGCAATCGGTGCGGGTGGAGCATGGTAGGGAGATGATACACGAGTCTGATCTTGTGTGTCGACAAAGCACGTATATGGACAGGCGAACATTTGCTATTCTATGCCATATGCCTAGGACTGTAGATGGTCTTTGTTCGACAGAGATTGTCGATGTTGAGGAAATGGTTTCAATGTTCTTGCACATTCTTGTCCATGACGTGAAGAACTGCGTAATTCAGCGAGAATTTGTACAATCAGGTGAGACAGTATCTCGACATTTCAACCTCGTCTTGTTGGTTGTGCGACGTCTCCACAACAAGTTGATAAAGAAACCTGTGTCAATAACAAACAACTGCACAGATCAACGTTGGAAGTGTTTCGAGAATTGTCTTGGGGCGTTGGACGGGACGTACAACAAGGTCAACATCCCCGCAGCAGATCGCCCTACGTTCAGAACGCGTAAGGGGAAAATTACGACTAATGTACTCGGCGTTTGCAACATTAAAGGGGATTTTGTATATGTCCTCGCCAGTTGAGAAGGATCCGCAGTAGACTCGCGGATTCTACCGGATGCCCTTGCACGACCCAACGGATTGCAAGTGCCAAAGGAGGCCAAAGGTACCGCTTGCAAGAGTGGCGTGGTGCTGGAAATGCCCCAACTACTGCAAAGGAATACTTCAACATGAAGCACTCTTCTGCGAGGAATCTGATTGAGCGCGCGTTTGGTCTTCTAAAGGGTCATTGGGAAATACTTCGTGCGAAGTTGTACTATCCCCTTCAAGTGCAGTGTCGCATCATTCTAGCATGTTGCCTGCTGCACAATTTGATAAACAAGGAAATGCCCAATTGCGATGACATTGAAGACTTTGATGAGGAGGAGTCTGCGTACGCCACGACCAACGCTAGAGAACACATTCAGTACATTGAGACCACAAACGAATGGTCTTAATGGCGCGAAAAATTGGCTGAAGCGATGTTCACCGAATGGCAGTTGCGTAACGCTTAAATTAGAACCCTTGCGATTGTATGCTAGTTTAAATGACATGTACTTTGTCCTTTTTCATATCTAATGTATACATGCATGATGTACAACAATAATTATAGGTCATAATATATGTTGTTATTTGTGCTTC

Coding sequence (CDS)

ATGGGTTTCATTTACCGACGGGGAGCATTCGTTGCCTCAGAAATCCTCACTTGGATCAGACGTCTTGGATCCAACTTCTCCTTGGACATGCATATCAATGCTACACGCCACACTGTTTTGTGGCAATCGGTGCGGGTGGAGCATGGTAGGGAGATGATACACGAGTCTGATCTTGTGTGTCGACAAAGCACGTATATGGACAGGCGAACATTTGCTATTCTATGCCATATGCCTAGGACTGTAGATGGTCTTTGTTCGACAGAGATTGTCGATGTTGAGGAAATGGTTTCAATGTTCTTGCACATTCTTGTCCATGACGTGAAGAACTGCGTAATTCAGCGAGAATTTGTACAATCAGGTGAGACAGTATCTCGACATTTCAACCTCGTCTTGTTGGTTGTGCGACGTCTCCACAACAAGTTGATAAAGAAACCTGTGTCAATAACAAACAACTGCACAGATCAACGTTGGAAGTGTTTCGAGAATTGTCTTGGGGCGTTGGACGGGACGTACAACAAGGTCAACATCCCCGCAGCAGATCGCCCTACGTTCAGAACGCGTAAGGGGAAAATTACGACTAATGTACTCGGCGTTTGCAACATTAAAGGGGATTTTGTATATGTCCTCGCCAGTTGA

Protein sequence

MGFIYRRGAFVASEILTWIRRLGSNFSLDMHINATRHTVLWQSVRVEHGREMIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCVIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTYNKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS

Homology

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BLAST of MELO3C031832.jh1 vs. NCBI nr
Match: KAA0033731.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (728), Expect = 3.27e-93
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 51  EMIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNC 110
           +MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNC
Sbjct: 33  QMIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNC 92

Query: 111 VIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGT 170
           VIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGT
Sbjct: 93  VIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGT 152

Query: 171 YNKVNIPAADRPTFRTR 187
           YNKVNIPAADRPTFRTR
Sbjct: 153 YNKVNIPAADRPTFRTR 169

[Close]

BLAST of MELO3C031832.jh1 vs. NCBI nr
Match: TYK27061.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 3.55e-88
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. NCBI nr
Match: KAA0043157.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 5.87e-88
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 1.06e-87
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 1.06e-87
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SWB4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G002050 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 1.58e-93
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 51  EMIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNC 110
           +MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNC
Sbjct: 33  QMIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNC 92

Query: 111 VIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGT 170
           VIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGT
Sbjct: 93  VIQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGT 152

Query: 171 YNKVNIPAADRPTFRTR 187
           YNKVNIPAADRPTFRTR
Sbjct: 153 YNKVNIPAADRPTFRTR 169

[Close]

BLAST of MELO3C031832.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DTQ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00550 PE=3 SV=1)

HSP 1 Score: 273 bits (697), Expect = 1.72e-88
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TMY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00200 PE=3 SV=1)

HSP 1 Score: 273 bits (697), Expect = 2.84e-88
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 273 bits (697), Expect = 5.12e-88
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 273 bits (697), Expect = 5.12e-88
Identity = 130/160 (81.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 52  MIHESDLVCRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCV 111
           MIHESDLVCRQST MDRRTFAILCH+ R V GL STEIVDVEEMV+MFLH+L HDVKN V
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 112 IQREFVQSGETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTY 171
           IQREFV+SGETVSRHFN+VLL V RL+ +LIK+PV +T+NC DQRWKCFENCLGALDGTY
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 145

Query: 172 NKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLAS 211
            KVN+PA DRPTFRTRKG+I TNVLGVC+ KGDFVYVLA 
Sbjct: 146 IKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAG 185

[Close]

BLAST of MELO3C031832.jh1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-14
Identity = 46/151 (30.46%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 60  CRQSTYMDRRTFAILCHMPRTVDGLCSTEIVDVEEMVSMFLHILVHDVKNCVIQREFVQS 119
           C ++  MD+  F  LC + +T   L  T  + +E  +++FL I+ H+++   +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 120 GETVSRHFNLVLLVVRRLHNKLIKKPVSITNNCTDQRWKCFENCLGALDGTYNKVNIPAA 179
           GET+SRHFN VL  V  +     +   +      D  +  F++C+G +D  +  V +   
Sbjct: 102 GETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPY--FKDCVGVVDSFHIPVMVGVD 161

Query: 180 DRPTFRTRKGKITTNVLGVCNIKGDFVYVLA 211
           ++  FR   G +T NVL   +    F YVLA
Sbjct: 162 EQGPFRNGNGLLTQNVLAASSFDLRFNYVLA 190

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BLAST of MELO3C031832.jh1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-07
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 160 FENCLGALDGTYNKVNIPAADRPTFRTRKGKITTNVLGVCNIKGDFVYVLA 211
           F++C+GA+D T+    +     P+FR RKG I+ N+L  CN   +F+YVL+
Sbjct: 22  FKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLS 72

The following BLAST results are available for this feature:

BLAST of MELO3C031832.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033731.1	3.27e-93	99.27	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27061.1	3.55e-88	81.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043157.1	5.87e-88	81.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	1.06e-87	81.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	1.06e-87	81.25	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]

BLAST of MELO3C031832.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031832.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWB4	1.58e-93	99.27	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTQ4	1.72e-88	81.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TMY2	2.84e-88	81.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	5.12e-88	81.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	5.12e-88	81.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C031832.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	4.4e-14	30.46	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	8.9e-07	41.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 41..206
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 41..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031832.jh1.t1	MELO3C031832.jh1.t1	mRNA