MELO3C031822.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C031822.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Protein Ycf2-like
Location	chr06: 22172144 .. 22174322 (-)
RNA-Seq Expression	MELO3C031822.jh1
Synteny	MELO3C031822.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAGTTTATTTGATCTTTCTTAATTCTCTCTCCCCACTCTATCAGCTACACATATTTCTTCTCCATTTTTCTCCAATCTCTCTGTCTCTCACTCTCTTTCCACTCAACTTTTCTCCACTGTCTACCATCCTCATTTCTCTCTCCACTCTTCTCTTCTCAATCTCGCTCTCACATCCTCCTTTCTTACCTCTATAAAATAATCATTTTCTCTTTCGCCCACACAAATGACAATTCTTCTTTTTCCTAAAGAAAAAGAAAAAGAAAAAAAAAAAAAACTCAAAGGGGTTGGAAGAGAGAAATTCTTCAGCGAGAGAGGGTTAAAAATCCTTCAACGAGAGAGGATTTAAATTCTTCAATGCGAATGGTACCAAAAAGGTGTGAATCTCTCCCTTCAACTCTCTCTTTAGTTTATTTTAGGGTTGATAAAAAAAAATAGCAAAATTAAATGTTTATTTTGGATAAATGATAATTTTATTTTTAAATTATCAAAATAACAAAACAGATAATTTTTAAATAATAAATGAGAAAAAAATGCATTAAATGCCCCTACCTAATTGACAAGTGTGTTTTCTAAATACAATTGTAACATAGTCCAAAAATATTCTATAATTAATACAAACTACGCATCCACACTTGAATATTCTAATTTTCCCCCAAAAAAGAAAATAAACCATCTTCTGCATGCAACCACTTTACATGCCATTCATTAGTTGGAGTTTGAAATCCGTATCATATATCACATTTGCAACATTCACATCTTCTACAATATATCCCATTATGCATCTCCTTCTTCACTTTTGAAAACACTAGAATTTCTTTGTGCCATCTCCTTTCCTTCATATCTTTGTTCCTTCAAATCTTCGATTAGCATCTCCGTTGTCTCAAATCTTCGTTTGTGCCGCCATCTCCGTCTTTCCTTCGTTTCGGTTGACTATTAAGATCGCTTTCCACCATTTCCTTTTGGCCTCCGTTTAGGTATGCAAACGTTTGTATTCAACCGTTCGTTTCCTTTTGTTTCCCTTCAACATAATCCGCTTCAAATTCAACATTCAAGTTTTAGGTTTGCTATATTATTTCAAGTCTTCAAATCTTCAATCTTTACGCTTTTCATCTTCAGGTTCGCTTCACCGTTTTCGATACCATCAATCTTCAATCTTCTATTCGTTTTCAAATCGATGAGTTATTCTTTTTTCTTCTTTGGATTTGTCCCCTATTCTCACATTTTCTACAGGTAGATAAAAAATATCCCGTTCTAAAATTTTCTTCTTAAGATTTGTCCCGTGTTCTAACATTCTCTGCATCTGTTTTCAATGTTCTTCTTGACCTGTGTTCTTCTATTTTGAAAATAGAGTACTGACTTTTTTTTTTTACGTAAATGTTAAATTTATAGATACAATTGAACGGGTATTTTATAATTTATTTGTTTATTTTAATCTTCCTAAAAGAAAGGGTATAAAATATGAACAGATATACTCTTTATTTTAGGAAGATTAATTGGGATTTGTTGTGTACTTATAAATATATATTGTTCTTATAAATTTTAGAGAATATAAAGATGAAAAAGAGGAAGGGAGAGGTCAGAACAAGAACAAGTGACCGGTTAAGAGCTGTGGGGATCACTGGTTCCAAGAAACGATTGCAAATTGGAATTCAAACTCTGTCGAGTTCTTCTGACGAGGTACTAATCTATACTTTTAAGAATTATCAAAAGTTGTAGATGTTTATAGCTTTTTCTATGCCTATCAGAAAACAGAAAATATAATGGGAGAGGGATCGGGGAGCAAGCGGGAGAGTCCAGGAACTTCAAAAAAGAGGGGGAGGATTGAACTGCCAAAAGAAGACGTCATTGTATAGAAGAAACAAAGGATAAAAAGCTTGGTAAACTGCAGATTGATTTTCCAATGAGTTGTGGTCTGTTAGGTTTCAACAAAGCTTATTTATGTTGTTGCCTGTGTAGGTTTCAAGAAGGCGAGTTTACAGAAGGAAAGAAACAAAAAGAGATTGAAGGAAAGGTGTGTGTTCCCCTTTGTTGTACTTGAATTATGTATTATATAAATTGATTATAACTTTGACAAACAGGAAGATACTGAAAGCGAAAGCGAATAGGAGTAACAAGTAGAAGAAGATGAAGAAGTAGAAGAAGATGAACAACAAGAAGAAGATAAACAAGTAGAA

mRNA sequence

AAAAAAAGTTTATTTGATCTTTCTTAATTCTCTCTCCCCACTCTATCAGCTACACATATTTCTTCTCCATTTTTCTCCAATCTCTCTGTCTCTCACTCTCTTTCCACTCAACTTTTCTCCACTGTCTACCATCCTCATTTCTCTCTCCACTCTTCTCTTCTCAATCTCGCTCTCACATCCTCCTTTCTTACCTCTATAAAATAATCATTTTCTCTTTCGCCCACACAAATGACAATTCTTCTTTTTCCTAAAGAAAAAGAAAAAGAAAAAAAAAAAAAACTCAAAGGGGTTGGAAGAGAGAAATTCTTCAGCGAGAGAGGGTTAAAAATCCTTCAACGAGAGAGGATTTAAATTCTTCAATGCGAATGGTACCAAAAAGAGAATATAAAGATGAAAAAGAGGAAGGGAGAGGTCAGAACAAGAACAAGTGACCGGTTAAGAGCTGTGGGGATCACTGGTTCCAAGAAACGATTGCAAATTGGAATTCAAACTCTGTCGAGTTCTTCTGACGAGAAAACAGAAAATATAATGGGAGAGGGATCGGGGAGCAAGCGGGAGAGTCCAGGAACTTCAAAAAAGAGGGGGAGGATTGAACTGCCAAAAGAAGACGTCATTGTATAGAAGAAACAAAGGATAAAAAGCTTGGTTTCAAGAAGGCGAGTTTACAGAAGGAAAGAAACAAAAAGAGATTGAAGGAAAGGAAGATACTGAAAGCGAAAGCGAATAGGAGTAACAAGTAGAAGAAGATGAAGAAGTAGAAGAAGATGAACAACAAGAAGAAGATAAACAAGTAGAA

Coding sequence (CDS)

ATGAAAAAGAGGAAGGGAGAGGTCAGAACAAGAACAAGTGACCGGTTAAGAGCTGTGGGGATCACTGGTTCCAAGAAACGATTGCAAATTGGAATTCAAACTCTGTCGAGTTCTTCTGACGAGAAAACAGAAAATATAATGGGAGAGGGATCGGGGAGCAAGCGGGAGAGTCCAGGAACTTCAAAAAAGAGGGGGAGGATTGAACTGCCAAAAGAAGACGTCATTGTATAG

Protein sequence

MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGTSKKRGRIELPKEDVIV

Homology

[Close]

BLAST of MELO3C031822.jh1 vs. NCBI nr
Match: TYK28605.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.31e-23
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK KGE++TRTSDRLRA GITGS+K L  GIQ L SSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. NCBI nr
Match: KAA0033297.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.18e-22
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MK+ +GE++TRTSDRLRA GITGS+K L  GIQ LSSSS+E+TE+IM EGSG K+ESPGT
Sbjct: 1  MKRGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKKESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R +  KE+  V
Sbjct: 61 SKKRVRTKTKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. NCBI nr
Match: KAA0064135.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.10e-22
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK KGE++TRTSDRLRA GITGS+K L  GIQ L SSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. NCBI nr
Match: TYK26024.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.04e-21
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK +GE++TRTSDRLRA GITGS+K L  GIQ LSSSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. NCBI nr
Match: KAA0067175.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 2.37e-21
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK +GE++TRTSDRLRA GITGS+K L  GIQ LSSSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEDTV 76

[Close]

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DZ37 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00170 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.34e-24
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK KGE++TRTSDRLRA GITGS+K L  GIQ L SSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SVE9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001080 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.73e-23
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MK+ +GE++TRTSDRLRA GITGS+K L  GIQ LSSSS+E+TE+IM EGSG K+ESPGT
Sbjct: 1  MKRGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKKESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R +  KE+  V
Sbjct: 61 SKKRVRTKTKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VE08 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00540 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.47e-22
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK KGE++TRTSDRLRA GITGS+K L  GIQ L SSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGKGEIKTRTSDRLRAAGITGSRKSLATGIQNLLSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DR12 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00300 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.04e-22
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK +GE++TRTSDRLRA GITGS+K L  GIQ LSSSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEATV 76

[Close]

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VN68 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002520 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.15e-21
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MKKRKGEVRTRTSDRLRAVGITGSKKRLQIGIQTLSSSSDEKTENIMGEGSGSKRESPGT 60
          MKK +GE++TRTSDRLRA GITGS+K L  GIQ LSSSS+E+TE+IM EGSG KRESPGT
Sbjct: 1  MKKGRGEIKTRTSDRLRAAGITGSRKSLPTGIQNLSSSSEERTEDIMAEGSGGKRESPGT 60

Query: 61 SKKRGRIELPKEDVIV 76
          SKKR R E  KE+  V
Sbjct: 61 SKKRVRTETKKEEDTV 76

The following BLAST results are available for this feature:

BLAST of MELO3C031822.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28605.1	1.31e-23	71.05	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0033297.1	1.18e-22	67.11	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0064135.1	5.10e-22	71.05	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK26024.1	1.04e-21	71.05	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0067175.1	2.37e-21	71.05	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031822.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ37	6.34e-24	71.05	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G0...	[more]
A0A5A7SVE9	5.73e-23	67.11	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00...	[more]
A0A5A7VE08	2.47e-22	71.05	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00...	[more]
A0A5D3DR12	5.04e-22	71.05	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G0...	[more]
A0A5A7VN68	1.15e-21	71.05	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002...	[more]

BLAST of MELO3C031822.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031822.jh1.t1	MELO3C031822.jh1.t1	mRNA