MELO3C031798 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031798
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr12: 9505371 .. 9506098 (+)
RNA-Seq Expression	MELO3C031798
Synteny	MELO3C031798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGTTGGCTATCATGCAGTTATGGTAGCCTCCGTAGTTTGAAGGGGTGGGTAGGATGCGAAGATTTTTGAAGTATTTTGAAGTTAGTTTTAGTGAAAATTTAGAGGAGTAAGTTATAAATGTGTGTGAGAGAAAGATATGTATCTCTTTCTAATCAAACCTATTTATGTTTTAGGGACTTAAACGATGGACAAGAGTTGGATGAAACTTAGAAATAAGTTCTCCCTTAAGTATAGACAGGGAGTGACCCAATTTTTAGAATTTGTCAAGTTTCACGTTGATGCCTATGGACGATTAAGGTGTCCATGCAAGAGATGTTTAAATTTAAGTTGAAGCTCATTAGAGGGTGTGGACGACATCTACTGACTATTGGAATATACCCTCTTACACAGAATGGGTGTATCATAGAGAGCCATTAAGCTTTAGAGGTACAGAAAATTTTGAAGAATGAACTAGTAGTAATCCTTTTGATGAAGGAACTAGTAGTAGGCAATTTAATGAAGAAGATGAAATGTTTGGTATGCTAAATGACTTACATGCCCCCATTGAACATGAAGAGGAAACAGAGTTATGTTGTTTGGAAAAATGAAATGCCGATGAATGTTGGGGTAAATATAGATGAAGATAGAACAAACAATATATTTCAGGACTTATTGAATGAAGCACGTAATGAGTTGTACCCAGGTTGTTCTGAATTTTCGTCGTTAAATTTTTTGGTTAAGTTGA

mRNA sequence

GTTTTGTTGGCTATCATGCAGTTATGGGACTTAAACGATGGACAAGAGTTGGATGAAACTTAGAAATAAGTTCTCCCTTAAGTATAGACAGGGAGTGACCCAATTTTTAGAATTTGTCAAGTTTCACGTTGATGCCTATGGACGATTAAGGTGTCCATGCAAGAGATGTTTAAATTTAAGTTGAAGCTCATTAGAGGGTGTGGACGACATCTACTGACTATTGGAATATACCCTCTTACACAGAATGGGTGTATCATAGAGAGCCATTAAGCTTTAGAGGTACAGAAAATTTTGAAGAATGAACTAGTAGTAATCCTTTTGATGAAGGAACTAGTAGTAGGCAATTTAATGAAGAAGATGAAATGTTTGGTATGCTAAATGACTTACATGCCCCCATTGAACATGAAGAGGAAACAGAGTTATGTTGTTTGGAAAAATGAAATGCCGATGAATGTTGGGGTAAATATAGATGAAGATAGAACAAACAATATATTTCAGGACTTATTGAATGAAGCACGTAATGAGTTGTACCCAGGTTGTTCTGAATTTTCGTCGTTAAATTTTTTGGTTAAGTTGA

Coding sequence (CDS)

ATGACTTACATGCCCCCATTGAACATGAAGAGGAAACAGAGTTATGTTGTTTGGAAAAATGAAATGCCGATGAATGTTGGGGTAAATATAGATGAAGATAGAACAAACAATATATTTCAGGACTTATTGAATGAAGCACGTAATGAGTTGTACCCAGGTTGTTCTGAATTTTCGTCGTTAAATTTTTTGGTTAAGTTG

Protein sequence

MTYMPPLNMKRKQSYVVWKNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL

Homology

[Close]

BLAST of MELO3C031798 vs. NCBI nr
Match: KAA0035646.1 (uncharacterized protein E6C27_scaffold285G003370 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 6  PLNMKRKQSYVVWKNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVK 65
          P+  K K      K+EMPMNVGV+IDEDRTNNIFQDLLNEARNE YPGCSEFSSLNFLVK
Sbjct: 5  PIEQKEKLEEHRLKDEMPMNVGVDIDEDRTNNIFQDLLNEARNEFYPGCSEFSSLNFLVK 64

Query: 66 L 67
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C031798 vs. NCBI nr
Match: KAA0064176.1 (CACTA transposable element [Cucumis melo var. makuwa] >TYK02853.1 CACTA transposable element [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 6  PLNMKRKQSYVVWKNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVK 65
          P+  + +   +  ++EMPMNVGV+IDEDRTNNIF DLLNE RNELYPGCSEFSSLNFLVK
Sbjct: 8  PIEHEEETEELRLEDEMPMNVGVDIDEDRTNNIFYDLLNEERNELYPGCSEFSSLNFLVK 67

Query: 66 L 67
          L
Sbjct: 68 L 68

[Close]

BLAST of MELO3C031798 vs. NCBI nr
Match: TYK18968.1 (uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19  KNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL 67
           ++EM MNVGVNIDED TNNIFQDLLN+ARNELYPGCSEFSSLNFLVKL
Sbjct: 207 EDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 254

[Close]

BLAST of MELO3C031798 vs. NCBI nr
Match: KAA0032061.1 (uncharacterized protein E6C27_scaffold223G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19 KNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL 67
          ++EM MNVGVNIDED TNNIFQDLLN+ARNELYPGCSEFSSLNFLVKL
Sbjct: 21 EDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 68

[Close]

BLAST of MELO3C031798 vs. NCBI nr
Match: KAA0056368.1 (uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19  KNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL 67
           ++EM MNVGVNIDED TNNIFQDLLN+ARNELYPGCSEFSSLNFLVKL
Sbjct: 133 EDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 180

[Close]

BLAST of MELO3C031798 vs. ExPASy TrEMBL
Match: A0A5A7T0C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003370 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-17
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 6  PLNMKRKQSYVVWKNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVK 65
          P+  K K      K+EMPMNVGV+IDEDRTNNIFQDLLNEARNE YPGCSEFSSLNFLVK
Sbjct: 5  PIEQKEKLEEHRLKDEMPMNVGVDIDEDRTNNIFQDLLNEARNEFYPGCSEFSSLNFLVK 64

Query: 66 L 67
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C031798 vs. ExPASy TrEMBL
Match: A0A5D3BT53 (CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00550 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.4e-16
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 6  PLNMKRKQSYVVWKNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVK 65
          P+  + +   +  ++EMPMNVGV+IDEDRTNNIF DLLNE RNELYPGCSEFSSLNFLVK
Sbjct: 8  PIEHEEETEELRLEDEMPMNVGVDIDEDRTNNIFYDLLNEERNELYPGCSEFSSLNFLVK 67

Query: 66 L 67
          L
Sbjct: 68 L 68

[Close]

BLAST of MELO3C031798 vs. ExPASy TrEMBL
Match: A0A5D3D5X7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00580 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19  KNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL 67
           ++EM MNVGVNIDED TNNIFQDLLN+ARNELYPGCSEFSSLNFLVKL
Sbjct: 207 EDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 254

[Close]

BLAST of MELO3C031798 vs. ExPASy TrEMBL
Match: A0A5A7UMP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001050 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19  KNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL 67
           ++EM MNVGVNIDED TNNIFQDLLN+ARNELYPGCSEFSSLNFLVKL
Sbjct: 133 EDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 180

[Close]

BLAST of MELO3C031798 vs. ExPASy TrEMBL
Match: A0A5A7SR78 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00250 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 19 KNEMPMNVGVNIDEDRTNNIFQDLLNEARNELYPGCSEFSSLNFLVKL 67
          ++EM MNVGVNIDED TNNIFQDLLN+ARNELYPGCSEFSSLNFLVKL
Sbjct: 21 EDEMAMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKL 68

The following BLAST results are available for this feature:

BLAST of MELO3C031798 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C031798 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035646.1	2.1e-17	78.69	uncharacterized protein E6C27_scaffold285G003370 [Cucumis melo var. makuwa]	[more]
KAA0064176.1	1.5e-15	72.13	CACTA transposable element [Cucumis melo var. makuwa] >TYK02853.1 CACTA transpos...	[more]
TYK18968.1	3.4e-15	89.58	uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa]	[more]
KAA0032061.1	3.4e-15	89.58	uncharacterized protein E6C27_scaffold223G00250 [Cucumis melo var. makuwa]	[more]
KAA0056368.1	3.4e-15	89.58	uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0C5	1.0e-17	78.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BT53	7.4e-16	72.13	CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3D5X7	1.7e-15	89.58	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UMP4	1.7e-15	89.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SR78	1.7e-15	89.58	DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of MELO3C031798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031798.1	MELO3C031798.1	mRNA