MELO3C031786 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031786
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr01: 15118414 .. 15119184 (+)
RNA-Seq Expression	MELO3C031786
Synteny	MELO3C031786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGGTCTTAACTATACACCATTGTTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTAGACCACCAACTCATAATGTGCAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTTAAGGGAAAAAACGTCAAACAGTATGCGCATGAAAATCTGTAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCTGGCAAACAGAAGGAAAAATATAATACTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAAAGTATAGAACTAGAAGAGAAAAATTAACTGTTAAAGGAAGATAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATGATGCAACTTATTTACAGAACGAACTCGAAAAGACTAAGAGTTTCTTAAGAAGTCAAGATAAGTTAGAAAAGAATCTTGAGACAATAGATAAGGAGATGTGACAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGAGGGTTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGATGGAATATTTTCTCGAGCTGGTCAATGATTTGAATACATCAATTGGGAAACGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTACGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCAATTCC

mRNA sequence

GGGAGGTCTTAACTATACACCATTGTTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTAGACCACCAACTCATAATGTGCAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTTAAGGGAAAAAACGTCAAACAGTATGCGCATGAAAATCTGTAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCTGGCAAACAGAAGGAAAAATATAATACTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAAAGTATAGAACTAGAAGAGAAAAATTAACTGTTAAAGGAAGATAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATGATGCAACTTATTTACAGAACGAACTCGAAAAGACTAAGAGTTTCTTAAGAAGTCAAGATAAGTTAGAAAAGAATCTTGAGACAATAGATAAGGAGATGTGACAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGAGGGTTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGATGGAATATTTTCTCGAGCTGGTCAATGATTTGAATACATCAATTGGGAAACGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTACGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCAATTCC

Coding sequence (CDS)

ATGGAATATTTTCTCGAGCTGGTCAATGATTTGAATACATCAATTGGGAAACGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTACGTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCAATTCC

Protein sequence

MEYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS

Homology

[Close]

BLAST of MELO3C031786 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.3e-21
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLELVNDLNTSIGKRETQIMDLEA NHSLRQTVD+LHLKMAERSEEYEILKNYV+S
Sbjct: 213 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDS 270

[Close]

BLAST of MELO3C031786 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLELVNDLNTSIGKRETQIMDLEA NHSL QTVDSLHLKMAERSEEYEILKNYV+S
Sbjct: 165 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDS 222

[Close]

BLAST of MELO3C031786 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNYV S
Sbjct: 188 EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVES 245

[Close]

BLAST of MELO3C031786 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 3.5e-19
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLELVNDLNTSI KRETQIMDLEA NHSLRQT+D+LHLKMAERSEEYEILKNY +S
Sbjct: 172 EYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNYADS 229

[Close]

BLAST of MELO3C031786 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 4.6e-19
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNY +S
Sbjct: 71  EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADS 128

[Close]

BLAST of MELO3C031786 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLELVNDLNTSIGKRETQIMDLEA NHSLRQTVD+LHLKMAERSEEYEILKNYV+S
Sbjct: 213 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDS 270

[Close]

BLAST of MELO3C031786 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.9e-21
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLELVNDLNTSIGKRETQIMDLEA NHSL QTVDSLHLKMAERSEEYEILKNYV+S
Sbjct: 165 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDS 222

[Close]

BLAST of MELO3C031786 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.9e-20
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNYV S
Sbjct: 188 EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYVES 245

[Close]

BLAST of MELO3C031786 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLELVNDLNTSI KRETQIMDLEA NHSLRQT+D+LHLKMAERSEEYEILKNY +S
Sbjct: 172 EYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNYADS 229

[Close]

BLAST of MELO3C031786 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 2   EYFLELVNDLNTSIGKRETQIMDLEAHNHSLRQTVDSLHLKMAERSEEYEILKNYVNS 60
           EYFLE VNDLNTSIGKRETQIMDLEA NHSLRQTVDSLHLKMAE SEEYEILKNY +S
Sbjct: 71  EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADS 128

The following BLAST results are available for this feature:

BLAST of MELO3C031786 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18656.1	8.3e-21	94.83	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	1.4e-20	94.83	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	2.0e-19	93.10	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0037780.1	3.5e-19	89.66	girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var...	[more]
KAA0060422.1	4.6e-19	91.38	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031786 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D533	4.0e-21	94.83	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	6.9e-21	94.83	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7V9X6	9.9e-20	93.10	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P...	[more]
A0A5D3DUG2	1.7e-19	89.66	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P...	[more]
A0A5A7UX37	2.2e-19	91.38	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE...	[more]

BLAST of MELO3C031786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031786.1	MELO3C031786.1	mRNA