MELO3C031776 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031776
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	GPI mannosyltransferase 1
Location	chr10: 7806224 .. 7806626 (+)
RNA-Seq Expression	MELO3C031776
Synteny	MELO3C031776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTAAATTCAACATCATCTTCTTCATCTCAGCCGCAGCCTCCCACTCTCATCTTCTTCTTCTTCGAAATCACACGGCCACTCCGCCCCTACCACTCTTCTCTCCATTGAGATCTCCGACGACAATCTCCCTCCGTCCGTTGAAGCCGCCACCTTCACCTTAGTTCTCCGTAAAGCTTCTGTTCGTCGTTAGCCAAAGCCGCCACATCCTGAGCCGTTCCCCTTTGCGTCAGCCATCTCCTATGCGTTGCGACATCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAACCGATGTTTGTCCACGAAGCTTCGACCGCCGTTGTCGCATCTCAACGAACCCAGCCGCCGTCACGATCTCCCATTCGCATGAAGCTTGTTGCACCATCCATCCTTCTCTGTAG

mRNA sequence

CCCTAAATTCAACATCATCTTCTTCATCTCAGCCGCAGCCTCCCACTCTCATCTTCTTCTTCTACCACTCTTCTCTCCATTGAGATCTCCGACGACAATCTCCCTCCGTCCGTTGAAGCCGCCACCTTCACCTTAGTTCTCCGTAAAGCTTCTGTTCGTCGTTAGCCAAAGCCGCCACATCCTGAGCCGTTCCCCTTTGCGTCAGCCATCTCCTATGCGTTGCGACATCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAACCGATGTTTGTCCACGAAGCTTCGACCGCCGTTGTCGCATCTCAACGAACCCAGCCGCCGTCACGATCTCCCATTCGCATGAAGCTTGTTGCACCATCCATCCTTCTCTGTAG

Coding sequence (CDS)

ATGTTTGTCCACGAAGCTTCGACCGCCGTTGTCGCATCTCAACGAACCCAGCCGCCGTCACGATCTCCCATTCGCATGAAGCTTGTTGCACCATCCATCCTTCTCTGT

Protein sequence

MFVHEASTAVVASQRTQPPSRSPIRMKLVAPSILLC

Homology

[Close]

BLAST of MELO3C031776 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 9.3e-07
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MFVHEASTAVVASQRTQ-PPSRSPIRMKLVAPSILLC 37
           MFVHEASTAVVAS RTQ PPSRSPIRM++VAPSILLC
Sbjct: 258 MFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLC 294

[Close]

BLAST of MELO3C031776 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-07
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   MFVHEASTAVVASQRTQ-PPSRSPIRMKLVAPSILLC 37
           MFVHEASTAVVAS RTQ PPSRSPIRM++VAPSILLC
Sbjct: 258 MFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLC 294

The following BLAST results are available for this feature:

BLAST of MELO3C031776 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059932.1	9.3e-07	89.19	GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1...	[more]

BLAST of MELO3C031776 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMR1	4.5e-07	89.19	GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MELO3C031776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031776.1	MELO3C031776.1	mRNA