MELO3C031753.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031753.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 15851058 .. 15851261 (+)
RNA-Seq ExpressionMELO3C031753.jh1
SyntenyMELO3C031753.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGTGTACCTATTATACTTGCTCCAGTTCAAAGGAGACGTGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTTGGCATTTGGAACGGGATATTATGATTCAGGAGTCAATCGTTAG

mRNA sequence

ATGTATGGTGTACCTATTATACTTGCTCCAGTTCAAAGGAGACGTGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTTGGCATTTGGAACGGGATATTATGATTCAGGAGTCAATCGTTAG

Coding sequence (CDS)

ATGTATGGTGTACCTATTATACTTGCTCCAGTTCAAAGGAGACGTGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTTGGCATTTGGAACGGGATATTATGATTCAGGAGTCAATCGTTAG

Protein sequence

MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGYYDSGVNR
Homology
[Close]
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match: TYK01600.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 5.89e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
          MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY
Sbjct: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60

Query: 61 YDSGVNR 67
          YDSGVNR
Sbjct: 61 YDSGVNR 67

[Close]
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match: TYK25955.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 6.78e-29
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
          MY VPI+ APVQRRR LVQ+LDELEEVDQ+VEEVPP+TQTQSETGYVSP+MMM AFGT Y
Sbjct: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60

Query: 61 YDSGVNR 67
          Y  GV +
Sbjct: 61 YYPGVGQ 67

[Close]
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match: KAA0047564.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK14961.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 8.51e-29
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
          MY VPI+ APVQRR ALVQELDELEEVDQHVEEVP VTQTQSETGYVSPVMMM  FG GY
Sbjct: 1  MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60

Query: 61 YDSGVNR 67
          YD  V +
Sbjct: 61 YDPEVGQ 67

[Close]
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match: TYK05068.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 4.06e-28
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
           MY VPI+ APVQRR ALVQELD+LEEVDQHVEEVPPVTQTQS+ GYVSPVMMM  FG  Y
Sbjct: 99  MYDVPIVPAPVQRRHALVQELDQLEEVDQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTY 158

Query: 61  YDSGVNR 67
           YDSGV++
Sbjct: 159 YDSGVSQ 165

[Close]
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match: KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 6.15e-28
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
           MY VPI+ AP+QRRRALVQELDELEEVDQH+EEVPPVTQT+SET YVSP++MM AFGTGY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDSGVNR 67
           YD GV++
Sbjct: 337 YDPGVSQ 343

[Close]
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BR78 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001950 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 2.85e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
          MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY
Sbjct: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60

Query: 61 YDSGVNR 67
          YDSGVNR
Sbjct: 61 YDSGVNR 67

[Close]
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DR34 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00150 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 3.28e-29
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
          MY VPI+ APVQRRR LVQ+LDELEEVDQ+VEEVPP+TQTQSETGYVSP+MMM AFGT Y
Sbjct: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60

Query: 61 YDSGVNR 67
          Y  GV +
Sbjct: 61 YYPGVGQ 67

[Close]
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TX85 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00110 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 4.12e-29
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 1  MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
          MY VPI+ APVQRR ALVQELDELEEVDQHVEEVP VTQTQSETGYVSPVMMM  FG GY
Sbjct: 1  MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60

Query: 61 YDSGVNR 67
          YD  V +
Sbjct: 61 YDPEVGQ 67

[Close]
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1B6 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00380 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.96e-28
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
           MY VPI+ APVQRR ALVQELD+LEEVDQHVEEVPPVTQTQS+ GYVSPVMMM  FG  Y
Sbjct: 99  MYDVPIVPAPVQRRHALVQELDQLEEVDQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTY 158

Query: 61  YDSGVNR 67
           YDSGV++
Sbjct: 159 YDSGVSQ 165

[Close]
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.98e-28
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGY 60
           MY VPI+ AP+QRRRALVQELDELEEVDQH+EEVPPVTQT+SET YVSP++MM AFGTGY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDSGVNR 67
           YD GV++
Sbjct: 337 YDPGVSQ 343

The following BLAST results are available for this feature:
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01600.15.89e-40100.00GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK25955.16.78e-2979.10GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0047564.18.51e-2982.09GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK05068.14.06e-2880.60GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0051098.16.15e-2880.60serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
BLAST of MELO3C031753.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BR782.85e-40100.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3DR343.28e-2979.10GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TX854.12e-2982.09GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3C1B61.96e-2880.60GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7U7312.98e-2880.60Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
BLAST of MELO3C031753.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031753.jh1.t1MELO3C031753.jh1.t1mRNA