MELO3C031723.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031723.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranspos_assoc domain-containing protein
Locationchr06: 13971253 .. 13972123 (-)
RNA-Seq ExpressionMELO3C031723.jh1
SyntenyMELO3C031723.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGTTTTGGCTATCCTGCAGTTATAGTAGCCTTTAGTTCAATTCTAGTAGTTTATTTTCTTAGTAGTTTTGAATAACATTGTTGTTGATTTGGAATGACTATTATGCAGTTATAGTAGCCTTTTTTTTATTTTGAATTTGTTTGTATTTCTAAGGGTTTGAAAGGGTGGTAATAGGGTAGCTTGTAAGGTAGCATTGTTAGAACGGGTGGGTAGGATGCAAAGATTAAAATTGTTTGTGGTTAATTAGGTTGTGGTGACTATCTTGCAGTTATGATAGCCTCTATAGTTTGAAGTTAGTTTTAGTGAACAATTTTGGGAGATTGTATATTTAGGGGAGTAAGTTTAGGATATGAGAGGAAAATGATATGCTTCTAATCAGACCTATTTATGTTTTAGGGACTTAAAATGGACAAGGGTCGGATGAAACTTAGGAATAAGTTTTTTTTTTAGTATAGAGAGAGAATGGCTCAATTTCTAGACGTTGTCAAGGTTCACGTTGATGCCAATGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTCAAATTGGAACTCACTAAAGGGTGTGGAACGACATCTACAGACTATTGAAATTATATCCCCCTACTACATAGAATGGGTGTTCATAGAGAGTCGATTAGCTTTAGAGGTACAAAAAACTTAAAGAAAAGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAGTATGCAGTTTGATGAAAAAGATAATATATTCAGTATGCTGAATAATTTACAAGTCCCGAACACGAAGAGGAAATGAAGGAAAGTCGTTTGGAGGATGAAATGTCGAGGAATATTGGGATAGATATAAATGAAGATACAACAAACATATTTCAAGGCTTA

mRNA sequence

ATTTGTTTTGGCTATCCTGCAGTTATAGGACTTAAAATGGACAAGGGTCGGATGAAACTTAGGAATAAGTTTTTTTTTTAGTATAGAGAGAGAATGGCTCAATTTCTAGACGTTGTCAAGGTTCACGTTGATGCCAATGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTCAAATTGGAACTCACTAAAGGGTGTGGAACGACATCTACAGACTATTGAAATTATATCCCCCTACTACATAGAATGGGTGTTCATAGAGAGTCGATTAGCTTTAGAGGTACAAAAAACTTAAAGAAAAGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAGTATGCAGTTTGATGAAAAAGATAATATATTCAGTATGCTGAATAATTTACAAGTCCCGAACACGAAGAGGAAATGAAGGAAAGTCGTTTGGAGGATGAAATGTCGAGGAATATTGGGATAGATATAAATGAAGATACAACAAACATATTTCAAGGCTTA

Coding sequence (CDS)

ATGGCTCAATTTCTAGACGTTGTCAAGGTTCACGTTGATGCCAATGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTCAAATTGGAACTCACTAAAGGGTGTGGAACGACATCTACAGACTATTGAAATTATATCCCCCTACTACATAGAATGGGTGTTCATAGAGAGTCGATTAGCTTTAGAGGTACAAAAAACTTAA

Protein sequence

MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRLALEVQKT
Homology
BLAST of MELO3C031723.jh1 vs. NCBI nr
Match: KAA0056368.1 (uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 6.93e-19
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
          + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYYIEWV+
Sbjct: 20 VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYIEWVY 73

BLAST of MELO3C031723.jh1 vs. NCBI nr
Match: TYJ99928.1 (uncharacterized protein E5676_scaffold701G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 8.32e-19
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1   MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
           + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYY EWV+
Sbjct: 77  VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYTEWVY 130

BLAST of MELO3C031723.jh1 vs. NCBI nr
Match: KAA0038080.1 (uncharacterized protein E6C27_scaffold36G002950 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.02e-18
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
          + QFL+V K  VDA  RIRCPCKRCMNSNWNSL+GVER L TI   SPYY EWV+
Sbjct: 20 VTQFLEVAKFLVDAYRRIRCPCKRCMNSNWNSLEGVERRLLTIGT-SPYYTEWVY 73

BLAST of MELO3C031723.jh1 vs. NCBI nr
Match: KAA0050852.1 (uncharacterized protein E6C27_scaffold404G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.46e-18
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1   MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRL 60
           + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYY EW   E  +
Sbjct: 98  VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYTEWDISEDEI 157

Query: 61  ALEV 64
             +V
Sbjct: 158 CDQV 160

BLAST of MELO3C031723.jh1 vs. NCBI nr
Match: TYK16353.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 2.36e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1  MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
          + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYY EWV+
Sbjct: 20 VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYTEWVY 73

BLAST of MELO3C031723.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UMP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001050 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.35e-19
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
          + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYYIEWV+
Sbjct: 20 VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYIEWVY 73

BLAST of MELO3C031723.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BP89 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00540 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.03e-19
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1   MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
           + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYY EWV+
Sbjct: 77  VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYTEWVY 130

BLAST of MELO3C031723.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T400 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002950 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.95e-19
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
          + QFL+V K  VDA  RIRCPCKRCMNSNWNSL+GVER L TI   SPYY EWV+
Sbjct: 20 VTQFLEVAKFLVDAYRRIRCPCKRCMNSNWNSLEGVERRLLTIGT-SPYYTEWVY 73

BLAST of MELO3C031723.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U4T2 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001210 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.06e-19
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1   MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRL 60
           + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYY EW   E  +
Sbjct: 98  VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYTEWDISEDEI 157

Query: 61  ALEV 64
             +V
Sbjct: 158 CDQV 160

BLAST of MELO3C031723.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CWU5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001370 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.14e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1  MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 55
          + QFL+  K HVDA GR+RCPCKRC+N NW+SL+GVERHL TI I SPYY EWV+
Sbjct: 20 VTQFLEFAKFHVDAYGRLRCPCKRCLNLNWSSLEGVERHLLTIGI-SPYYTEWVY 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056368.16.93e-1970.91uncharacterized protein E6C27_scaffold186G001050 [Cucumis melo var. makuwa][more]
TYJ99928.18.32e-1969.09uncharacterized protein E5676_scaffold701G00540 [Cucumis melo var. makuwa][more]
KAA0038080.11.02e-1870.91uncharacterized protein E6C27_scaffold36G002950 [Cucumis melo var. makuwa][more]
KAA0050852.11.46e-1860.94uncharacterized protein E6C27_scaffold404G001210 [Cucumis melo var. makuwa][more]
TYK16353.12.36e-1869.09CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMP43.35e-1970.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BP894.03e-1969.09Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T4004.95e-1970.91Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7U4T27.06e-1960.94Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CWU51.14e-1869.09CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 2..54
e-value: 2.4E-9
score: 37.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031723.jh1.t1MELO3C031723.jh1.t1mRNA