MELO3C031664 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031664
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	cyclic nucleotide-gated ion channel 1-like isoform X3
Location	chr06: 8928688 .. 8928924 (-)
RNA-Seq Expression	MELO3C031664
Synteny	MELO3C031664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

mRNA sequence

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

Coding sequence (CDS)

ATGGGATTGACATTTACCAAGAGCGCTGGAACTAGAACAACGATTAACACTTTCAGAAAAGGTGATTTGTTAGGGGAGCAACTATTGAATTGGGTAGTGGGAAATCTTCTTGTATCTGAAATTCCTTTGTCCAAATGTTCTCTCAAGACACATACCCAAATGGGAGCCTTCGCTCTTAAGGCTATCGATCTACAATATCATACCAAGTGGGACACAAATACGTATAGGTTAAGTTAA

Protein sequence

MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQYHTKWDTNTYRLS

Homology

[Close]

BLAST of MELO3C031664 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo] >TYK21168.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 461 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 520

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 521 AIDPQYHTKWDTNTYRLS 538

[Close]

BLAST of MELO3C031664 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 354 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 413

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 414 AIDPQYHTKWDTNTYRLS 431

[Close]

BLAST of MELO3C031664 vs. NCBI nr
Match: KAA0061693.1 (cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 462 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 521

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 522 AIDPQYHTKWDTNTYRLS 539

[Close]

BLAST of MELO3C031664 vs. NCBI nr
Match: TYK31713.1 (cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 60/76 (78.95%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTINTF KGDL GEQLL+W  GNL   EIPLSKC+LKT TQM AFALK
Sbjct: 420 MGLTFSKSTGTRTTINTFGKGDLFGEQLLDWAAGNLPTFEIPLSKCTLKTQTQMEAFALK 479

Query: 61  AIDLQYHTKWDTNTYR 77
           AID QYHTKWD N YR
Sbjct: 480 AIDPQYHTKWDINMYR 495

[Close]

BLAST of MELO3C031664 vs. ExPASy Swiss-Prot
Match: Q9SU64 (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana OX=3702 GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.7e-04
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 17  TFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           T R GD  GE+LL W +   +   +PLS  +++T +++ AFAL+A DL++
Sbjct: 519 TLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKF 568

[Close]

BLAST of MELO3C031664 vs. ExPASy TrEMBL
Match: A0A1S4DYA3 (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.7e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 354 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 413

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 414 AIDPQYHTKWDTNTYRLS 431

[Close]

BLAST of MELO3C031664 vs. ExPASy TrEMBL
Match: A0A5A7V0L3 (Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00660 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.7e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 462 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 521

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 522 AIDPQYHTKWDTNTYRLS 539

[Close]

BLAST of MELO3C031664 vs. ExPASy TrEMBL
Match: A0A5D3DCD7 (Cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00390 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.7e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664 vs. ExPASy TrEMBL
Match: A0A1S3BLM4 (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.7e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 461 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 520

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 521 AIDPQYHTKWDTNTYRLS 538

[Close]

BLAST of MELO3C031664 vs. ExPASy TrEMBL
Match: A0A1S4DXJ0 (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.7e-28
Identity = 64/78 (82.05%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MGLTFTKSAGTRTTINTFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 60
           MGLTF+KS GTRTTIN F KGDL GEQLL W   NL VSEIPLSKC+LK HTQM AFALK
Sbjct: 457 MGLTFSKSTGTRTTINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALK 516

Query: 61  AIDLQYHTKWDTNTYRLS 79
           AID QYHTKWDTNTYRLS
Sbjct: 517 AIDPQYHTKWDTNTYRLS 534

[Close]

BLAST of MELO3C031664 vs. TAIR 10
Match: AT3G48010.1 (cyclic nucleotide-gated channel 16 )

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 17  TFRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           T R GD  GE+LL W +   +   +PLS  +++T +++ AFAL+A DL++
Sbjct: 519 TLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKF 568

[Close]

BLAST of MELO3C031664 vs. TAIR 10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1 )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 27/84 (32.14%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 3   LTFTKSAGTRTTINT--FRKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALK 62
           LT T + G    +N+     GD  GE+LL W +     S +P+S  +++   ++ AFALK
Sbjct: 532 LTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALK 591

Query: 63  AIDLQY--------HTKWDTNTYR 77
           A DL++        H+K   +T+R
Sbjct: 592 ADDLKFVASQFRRLHSKQLRHTFR 615

[Close]

BLAST of MELO3C031664 vs. TAIR 10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7 )

HSP 1 Score: 40.0 bits (92), Expect = 9.9e-04
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 19  RKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           ++GD  GE+LL W +     S +P S  ++K  T++ AFAL+A +L++
Sbjct: 537 KEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKF 584

[Close]

BLAST of MELO3C031664 vs. TAIR 10
Match: AT1G19780.1 (cyclic nucleotide gated channel 8 )

HSP 1 Score: 40.0 bits (92), Expect = 9.9e-04
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 19  RKGDLLGEQLLNWVVGNLLVSEIPLSKCSLKTHTQMGAFALKAIDLQY 67
           ++GD  GE+LL W +     S +P S  ++K  T++ AFAL+A +L++
Sbjct: 572 KEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKF 619

The following BLAST results are available for this feature:

BLAST of MELO3C031664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900693.1	1.6e-27	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo] ...	[more]
XP_008449547.1	1.6e-27	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
XP_016900694.1	1.6e-27	82.05	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ...	[more]
KAA0061693.1	1.6e-27	82.05	cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa]	[more]
TYK31713.1	2.5e-25	78.95	cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031664 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SU64	9.7e-04	40.00	Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C031664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DYA3	7.7e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7V0L3	7.7e-28	82.05	Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A5D3DCD7	7.7e-28	82.05	Cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLM4	7.7e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A1S4DXJ0	7.7e-28	82.05	cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of MELO3C031664 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48010.1	6.9e-05	40.00	cyclic nucleotide-gated channel 16	[more]
AT5G53130.1	2.0e-04	32.14	cyclic nucleotide gated channel 1	[more]
AT1G15990.1	9.9e-04	37.50	cyclic nucleotide gated channel 7	[more]
AT1G19780.1	9.9e-04	37.50	cyclic nucleotide gated channel 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 3..70 e-value: 9.5E-9 score: 37.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031664.1	MELO3C031664.1	mRNA