MELO3C031659 (gene) Melon (DHL92) v4

Overview
NameMELO3C031659
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 8720324 .. 8720638 (-)
RNA-Seq ExpressionMELO3C031659
SyntenyMELO3C031659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACACAAACACAGAGCGAGACTGGTTACGTTAGTCCGATGATGATGATGCCAACATTTGAAACGAGATATTATGATTTAGGAGTCGGTCAATCGTCAAACTTTGGAATAGGATATTACAATATGGAGGTAGGTCCATCATCGTCAAACTTTAGGTAAGGATACTATGATTTAGAGACTGATCCATCATCTTCATAATGAATATTTATATTATGAAGTGTCGACAATAGTACTCGAGCAACCAAATGACCAACAACAACAAGAGAATCATGAGGGCTAGAGCAACAAAGGGTGCAGAGTCGACAACGACAACTAG

mRNA sequence

TGACACAAACACAGAGCGAGACTGGTTACGTTAGTCCGATGATGATGATGCCAACATTTGAAACGAGATATTATGATTTAGGAGTCGGTCAATCGTCAAACTTTGGAATAGGATATTACAATATGGAGGTAGGTCCATCATCGTCAAACTTTAGGTAAGGATACTATGATTTAGAGACTGATCCATCATCTTCATAATGAATATTTATATTATGAAGTGTCGACAATAGTACTCGAGCAACCAAATGACCAACAACAACAAGAGAATCATGAGGGCTAGAGCAACAAAGGGTGCAGAGTCGACAACGACAACTAG

Coding sequence (CDS)

ATGATGATGATGCCAACATTTGAAACGAGATATTATGATTTAGGAGTCGGTCAATCGTCAAACTTTGGAATAGGATATTACAATATGGAGGTAGGTCCATCATCGTCAAACTTTAGGTAA

Protein sequence

MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNFR
Homology
[Close]
BLAST of MELO3C031659 vs. NCBI nr
Match: TYK29179.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MMMMPTFETRYYDLGVGQSSNFGIGYYNME 31
          MMMMPTFETRYYDLGVGQSSNFGIGYYNME
Sbjct: 65 MMMMPTFETRYYDLGVGQSSNFGIGYYNME 94

[Close]
BLAST of MELO3C031659 vs. NCBI nr
Match: KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNFR 40
           +MMM  FET YYD GVGQSS+FG GYYN E GPSSSNFR
Sbjct: 169 VMMMQAFETTYYDSGVGQSSDFGTGYYNSEAGPSSSNFR 207

[Close]
BLAST of MELO3C031659 vs. NCBI nr
Match: KAA0050311.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK03528.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNFR 40
           +MMMPTF T YYD G+ QSS+FG GYYN+E GPSS++FR
Sbjct: 213 VMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSSTDFR 251

[Close]
BLAST of MELO3C031659 vs. NCBI nr
Match: KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNF 39
           +MMMPTF T YYDLGVGQSS+FG  YYN E GPSS++F
Sbjct: 395 LMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDF 432

[Close]
BLAST of MELO3C031659 vs. NCBI nr
Match: TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNF 39
           +MMMPTF T YYDLGVGQSS+FG  YYN E GPSS++F
Sbjct: 198 LMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDF 235

[Close]
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match: A0A5D3E0G1 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003690 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MMMMPTFETRYYDLGVGQSSNFGIGYYNME 31
          MMMMPTFETRYYDLGVGQSSNFGIGYYNME
Sbjct: 65 MMMMPTFETRYYDLGVGQSSNFGIGYYNME 94

[Close]
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match: A0A5A7U9Y2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00310 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNFR 40
           +MMM  FET YYD GVGQSS+FG GYYN E GPSSSNFR
Sbjct: 169 VMMMQAFETTYYDSGVGQSSDFGTGYYNSEAGPSSSNFR 207

[Close]
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match: A0A5A7U9V2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00180 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNFR 40
           +MMMPTF T YYD G+ QSS+FG GYYN+E GPSS++FR
Sbjct: 213 VMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSSTDFR 251

[Close]
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match: A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNF 39
           +MMMPTF T YYDLGVGQSS+FG  YYN E GPSS++F
Sbjct: 395 LMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDF 432

[Close]
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match: A0A5D3CHF6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001150 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MMMMPTFETRYYDLGVGQSSNFGIGYYNMEVGPSSSNF 39
           +MMMPTF T YYDLGVGQSS+FG  YYN E GPSS++F
Sbjct: 198 LMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDF 235

The following BLAST results are available for this feature:
BLAST of MELO3C031659 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK29179.14.1e-08100.00GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0051227.11.2e-0776.92mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0050311.11.3e-0669.23mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0037866.12.2e-0673.68mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK09816.12.2e-0673.68mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of MELO3C031659 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E0G12.0e-08100.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7U9Y25.7e-0876.92Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7U9V26.4e-0769.23Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7T6Q61.1e-0673.68Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CHF61.1e-0673.68Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of MELO3C031659 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031659.1MELO3C031659.1mRNA