MELO3C031645 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031645
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pleiotropic drug resistance protein 1-like
Location	chr06: 7650630 .. 7651042 (-)
RNA-Seq Expression	MELO3C031645
Synteny	MELO3C031645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATCGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACGACTAAGAATGGTTTACTAACAAGCCCATTAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAGCAAAAGACGGTTTGATCAGTCTGGTAAAGATTTCGAGCAAGACGTTCTTGCCCCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCCCCCATGCCCGGTGCAAAGAAACCAAACTTGAAGAGGCCAGCATTTGTTTCAGTAGTACTTCCCAAATCGATTACATCTGGTGTAGTTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAGAGAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGTAGTTTATTTTAAGCCGTAG

mRNA sequence

ATGATGAATCGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACGACTAAGAATGGTTTACTAACAAGCCCATTAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAGCAAAAGACGGTTTGATCAGTCTGGTAAAGATTTCGAGCAAGACGTTCTTGCCCCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCCCCCATGCCCGGTGCAAAGAAACCAAACTTGAAGAGGCCAGCATTTGTTTCAGTAGTACTTCCCAAATCGATTACATCTGGTGTAGTTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAGAGAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGTAGTTTATTTTAAGCCGTAG

Coding sequence (CDS)

ATGGAAACGACTAAGAATGGTTTACTAACAAGCCCATTAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAGCAAAAGACGGTTTGATCAGTCTGGTAAAGATTTCGAGCAAGACGTTCTTGCCCCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCCCCCATGCCCGGTGCAAAGAAACCAAACTTGA

Protein sequence

METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCPVQRNQT

Homology

[Close]

BLAST of MELO3C031645 vs. NCBI nr
Match: TYK03130.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCPVQ 60
           METTKNGLLTSP GRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLS PCPVQ
Sbjct: 312 METTKNGLLTSPSGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSSPCPVQ 371

Query: 61  RNQT 65
           RNQT
Sbjct: 372 RNQT 375

[Close]

BLAST of MELO3C031645 vs. NCBI nr
Match: KAA0050450.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1    METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
            MET+K+GLLTSP GRVNDISMEDNTE KDGLIS VKISSKTFLPQEGSSLVNLS P P
Sbjct: 1119 METSKSGLLTSPSGRVNDISMEDNTETKDGLISPVKISSKTFLPQEGSSLVNLSLPMP 1176

[Close]

BLAST of MELO3C031645 vs. NCBI nr
Match: XP_004140752.1 (uncharacterized protein LOC101210672 [Cucumis sativus] >XP_011651188.1 uncharacterized protein LOC101210672 [Cucumis sativus] >KAE8650470.1 hypothetical protein Csa_010674 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
           M+TT NGLL SP G VNDISMEDNTE KDGLIS VK +SKTFLPQEG+SLVN SPP P
Sbjct: 279 MKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFLPQEGNSLVNSSPPMP 336

[Close]

BLAST of MELO3C031645 vs. NCBI nr
Match: KAA0038723.1 (uncharacterized protein E6C27_scaffold92G002690 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 270 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 329

Query: 61  VQR 62
           V +
Sbjct: 330 VAK 332

[Close]

BLAST of MELO3C031645 vs. NCBI nr
Match: XP_008466257.1 (PREDICTED: uncharacterized protein LOC103503723 isoform X2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 166 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 225

Query: 61  VQR 62
           V +
Sbjct: 226 VAK 228

[Close]

BLAST of MELO3C031645 vs. ExPASy TrEMBL
Match: A0A5D3BVI1 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00040 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.0e-25
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCPVQ 60
           METTKNGLLTSP GRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLS PCPVQ
Sbjct: 312 METTKNGLLTSPSGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSSPCPVQ 371

Query: 61  RNQT 65
           RNQT
Sbjct: 372 RNQT 375

[Close]

BLAST of MELO3C031645 vs. ExPASy TrEMBL
Match: A0A5A7U5F9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00570 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1    METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
            MET+K+GLLTSP GRVNDISMEDNTE KDGLIS VKISSKTFLPQEGSSLVNLS P P
Sbjct: 1119 METSKSGLLTSPSGRVNDISMEDNTETKDGLISPVKISSKTFLPQEGSSLVNLSLPMP 1176

[Close]

BLAST of MELO3C031645 vs. ExPASy TrEMBL
Match: A0A0A0LBJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183980 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
           M+TT NGLL SP G VNDISMEDNTE KDGLIS VK +SKTFLPQEG+SLVN SPP P
Sbjct: 204 MKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFLPQEGNSLVNSSPPMP 261

[Close]

BLAST of MELO3C031645 vs. ExPASy TrEMBL
Match: A0A5A7T6Z8 (DUF4477 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G002690 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 270 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 329

Query: 61  VQR 62
           V +
Sbjct: 330 VAK 332

[Close]

BLAST of MELO3C031645 vs. ExPASy TrEMBL
Match: A0A5D3E7Q6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006360 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 229 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 288

Query: 61  VQR 62
           V +
Sbjct: 289 VAK 291

The following BLAST results are available for this feature:

BLAST of MELO3C031645 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03130.1	1.0e-24	96.88	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]	[more]
KAA0050450.1	1.6e-17	87.93	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_004140752.1	2.5e-15	79.31	uncharacterized protein LOC101210672 [Cucumis sativus] >XP_011651188.1 uncharact...	[more]
KAA0038723.1	5.7e-15	77.78	uncharacterized protein E6C27_scaffold92G002690 [Cucumis melo var. makuwa]	[more]
XP_008466257.1	5.7e-15	77.78	PREDICTED: uncharacterized protein LOC103503723 isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C031645 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVI1	5.0e-25	96.88	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7U5F9	7.7e-18	87.93	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0LBJ0	1.2e-15	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183980 PE=4 SV=1	[more]
A0A5A7T6Z8	2.7e-15	77.78	DUF4477 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3E7Q6	2.7e-15	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C031645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031645.1	MELO3C031645.1	mRNA