MELO3C031620 (gene) Melon (DHL92) v4

Overview
NameMELO3C031620
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr04: 11124039 .. 11124596 (-)
RNA-Seq ExpressionMELO3C031620
SyntenyMELO3C031620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCAAATGACAGAAGACTTCGTGATGTTGCAGATAATCAACAACAAGTCCTTGATATATGTAATAATAAGGAGAGGTACATGAAGGAGATACATTATATGTATACGATCTACCTATTGTACAATCCACTAGTTCATAAGGGAAGTGTTCCAGTGGAAGAAGTTGAACGGGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTATGACACAGACACAAAGCTAAACTGGTTATTGTAGTTCGATGATGATGATGCCAACATTTGGAGCAAGATATTGTGATTCTTAGGTCAGTACAAGATATTATGATTTAGGGATCGATCTATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTAACATGCATTGACATGGACATGGTCGTGGAGAACATAACAAATATCTGTACTATGAAGCACTTGTAGAGGTATTAGATCGACAATAGTACCAACAACAACTAGAAAACCAAGAGGAGTCACAACAGAATAGAGTTTAGAGTCGAAGGCGACAACCTGCTTGAAATGGACGACGTCCAGGTTGTGGAACACATTAA

mRNA sequence

AGATCAAATGACAGAAGACTTCGTGATGTTGCAGATAATCAACAACAAGTCCTTGATATATGTAATAATAAGGAGAGGTACATGAAGGAGATACATTATATGTATACGATCTACCTATTGTACAATCCACTAGTTCATAAGGGAAGTGTTCCAGTGGAAGAAGTTGAACGGGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTATGACACAGACACAAAGCTAAACTGGTTATTGGATCGATCTATTGTCTTCATACATGGATGTCGGTCCATCAACTTCTAACATGCATTGACATGGACATGGTCGTGGAGAACATAACAAATATCTGTACTATGAAGCACTTGTAGAGGTATTAGATCGACAATAGTACCAACAACAACTAGAAAACCAAGAGGAGTCACAACAGAATAGAGTTTAGAGTCGAAGGCGACAACCTGCTTGAAATGGACGACGTCCAGGTTGTGGAACACATTAA

Coding sequence (CDS)

ATGAAGGAGATACATTATATGTATACGATCTACCTATTGTACAATCCACTAGTTCATAAGGGAAGTGTTCCAGTGGAAGAAGTTGAACGGGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTATGACACAGACACAAAGCTAA

Protein sequence

MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS
Homology
[Close]
BLAST of MELO3C031620 vs. NCBI nr
Match: KAA0066290.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 4.1e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
           MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS
Sbjct: 529 MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 576

[Close]
BLAST of MELO3C031620 vs. NCBI nr
Match: KAA0064192.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQT 47
           M+EIH MY + ++  PL H+G V VEEVE DEVYHNVEEVPPMTQT
Sbjct: 373 MEEIHNMYDLPIV-PPLAHRGCVRVEEVELDEVYHNVEEVPPMTQT 417

[Close]
BLAST of MELO3C031620 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
           M+EIH MY + ++  P VH+G V VEE E DEVYHNVEEVPP TQTQS
Sbjct: 176 MEEIHNMYDLSIV-PPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 222

[Close]
BLAST of MELO3C031620 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
           M+EIH MY + ++  P VH+G V VEE E DEVYHNVEEVPP TQTQS
Sbjct: 167 MEEIHNMYDLSIV-PPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 213

[Close]
BLAST of MELO3C031620 vs. NCBI nr
Match: KAA0051214.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1  MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
          M+EIH  Y + ++  PLVHKG V VEEVE DEVY NVEEVPP TQTQS
Sbjct: 1  MEEIHNTYDLPIV-PPLVHKGCVRVEEVELDEVYRNVEEVPPTTQTQS 47

[Close]
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match: A0A5A7VGL1 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003410 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
           MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS
Sbjct: 529 MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 576

[Close]
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match: A0A5A7V745 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001310 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.0e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQT 47
           M+EIH MY + ++  PL H+G V VEEVE DEVYHNVEEVPPMTQT
Sbjct: 373 MEEIHNMYDLPIV-PPLAHRGCVRVEEVELDEVYHNVEEVPPMTQT 417

[Close]
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
           M+EIH MY + ++  P VH+G V VEE E DEVYHNVEEVPP TQTQS
Sbjct: 176 MEEIHNMYDLSIV-PPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 222

[Close]
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
           M+EIH MY + ++  P VH+G V VEE E DEVYHNVEEVPP TQTQS
Sbjct: 167 MEEIHNMYDLSIV-PPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 213

[Close]
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match: A0A5A7U7C3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00140 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1  MKEIHYMYTIYLLYNPLVHKGSVPVEEVERDEVYHNVEEVPPMTQTQS 49
          M+EIH  Y + ++  PLVHKG V VEEVE DEVY NVEEVPP TQTQS
Sbjct: 1  MEEIHNTYDLPIV-PPLVHKGCVRVEEVELDEVYRNVEEVPPTTQTQS 47

The following BLAST results are available for this feature:
BLAST of MELO3C031620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066290.14.1e-18100.00gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0064192.11.2e-0669.57serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0038951.12.8e-0666.67mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.12.8e-0666.67mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0051214.13.6e-0668.75GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of MELO3C031620 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGL12.0e-18100.00Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7V7456.0e-0769.57Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7TBF81.3e-0666.67Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH231.3e-0666.67Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7U7C31.7e-0668.75GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of MELO3C031620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031620.1MELO3C031620.1mRNA