MELO3C031551 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031551
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr05: 26071210 .. 26071521 (+)
RNA-Seq Expression	MELO3C031551
Synteny	MELO3C031551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCTCAACCCAAACTGGTGCATCTCCTGCCGATCCTCAAATGAAGACATGAATCATTTATTCATACACTGTCCTAAAGCCCACAAGCTTTGGCAACTATGGAGTTCTGAAACGGGCATTCCTGTGACTAATACAAATGTAAAAGACCTCTGTCTGAGCTTATGCAGGTTAACAGGCAGTAGTGCAAAGAACATCATCAGTTTCAATGCGGCCATAGTTACCTTATGGACAATATGGGTAGGGAGAAACAAACTTATCTTCACAGAGAAAGATTCAACCTACCAGAACACATGGGAAGAATTGCATTAA

mRNA sequence

ATGTTCCTCAACCCAAACTGGTGCATCTCCTGCCGATCCTCAAATGAAGACATGAATCATTTATTCATACACTGTCCTAAAGCCCACAAGCTTTGGCAACTATGGAGTTCTGAAACGGGCATTCCTGTGACTAATACAAATGTAAAAGACCTCTGTCTGAGCTTATGCAGGTTAACAGGCAGTAGTGCAAAGAACATCATCAGTTTCAATGCGGCCATAGTTACCTTATGGACAATATGGGTAGGGAGAAACAAACTTATCTTCACAGAGAAAGATTCAACCTACCAGAACACATGGGAAGAATTGCATTAA

Coding sequence (CDS)

ATGTTCCTCAACCCAAACTGGTGCATCTCCTGCCGATCCTCAAATGAAGACATGAATCATTTATTCATACACTGTCCTAAAGCCCACAAGCTTTGGCAACTATGGAGTTCTGAAACGGGCATTCCTGTGACTAATACAAATGTAAAAGACCTCTGTCTGAGCTTATGCAGGTTAACAGGCAGTAGTGCAAAGAACATCATCAGTTTCAATGCGGCCATAGTTACCTTATGGACAATATGGGTAGGGAGAAACAAACTTATCTTCACAGAGAAAGATTCAACCTACCAGAACACATGGGAAGAATTGCATTAA

Protein sequence

MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTGSSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEELH

Homology

[Close]

BLAST of MELO3C031551 vs. NCBI nr
Match: TYK10888.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 6.5e-45
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M LNPNWCISCRSSNEDMNHLFI CP AH+LW LWSSETGIP+ NTNVKDLCLSLCRLTG
Sbjct: 87  MCLNPNWCISCRSSNEDMNHLFILCPTAHRLWNLWSSETGIPMANTNVKDLCLSLCRLTG 146

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEEL 103
            +AKNIISFNAAI TLWTIW+ RN LIF EKDS+YQN WE++
Sbjct: 147 GNAKNIISFNAAIATLWTIWIRRNNLIFEEKDSSYQNAWEDI 188

[Close]

BLAST of MELO3C031551 vs. NCBI nr
Match: KAA0067274.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M LNPNWCISCRSSNEDMNHLFI CP AH+ W LWSSETGIP+ NTNVKDLCLSLCRLTG
Sbjct: 384 MCLNPNWCISCRSSNEDMNHLFILCPTAHRFWNLWSSETGIPMANTNVKDLCLSLCRLTG 443

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEEL 103
            +AKNIISFNAA  TLWTIW+ RN L+F EKDS+YQN WE++
Sbjct: 444 GNAKNIISFNAARATLWTIWIRRNNLLFAEKDSSYQNAWEDI 485

[Close]

BLAST of MELO3C031551 vs. NCBI nr
Match: TYK18371.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M L+PNWCISCRSSNEDMNHLFIHCPKAHKLWQ WS+E GI VTN NVKDLCLSLCRLTG
Sbjct: 11  MCLSPNWCISCRSSNEDMNHLFIHCPKAHKLWQQWSTEMGILVTNPNVKDLCLSLCRLTG 70

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDST 95
           SSAKNIISFNAAI  LWTIWVGRNKLIFTEK+ST
Sbjct: 71  SSAKNIISFNAAIAALWTIWVGRNKLIFTEKNST 104

[Close]

BLAST of MELO3C031551 vs. NCBI nr
Match: KAA0063656.1 (lupeol synthase-like isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 6.7e-42
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M L+PNWCISCRSSNEDMNHLFIHCPKAHKLWQ WS+E GI VTN NVKDLCLSLCRLTG
Sbjct: 294 MCLSPNWCISCRSSNEDMNHLFIHCPKAHKLWQQWSTEMGILVTNPNVKDLCLSLCRLTG 353

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDST 95
           SSAKNIISFNAAI  LWTIWVGRNKLI TEK+ST
Sbjct: 354 SSAKNIISFNAAIAALWTIWVGRNKLILTEKNST 387

[Close]

BLAST of MELO3C031551 vs. NCBI nr
Match: TYK28859.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 76/103 (73.79%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M LNP+WCISCRSSNEDMNHLFI CP A  LW +WSSETG P+ NTNVKDLCL LCR TG
Sbjct: 562 MSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQLCRQTG 621

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEELH 104
            +AKNIISFN+AI TLWTIW+ RN LIF +KDS+Y N WE++H
Sbjct: 622 RNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDMH 664

[Close]

BLAST of MELO3C031551 vs. ExPASy TrEMBL
Match: A0A5D3CI43 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00600 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M LNPNWCISCRSSNEDMNHLFI CP AH+LW LWSSETGIP+ NTNVKDLCLSLCRLTG
Sbjct: 87  MCLNPNWCISCRSSNEDMNHLFILCPTAHRLWNLWSSETGIPMANTNVKDLCLSLCRLTG 146

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEEL 103
            +AKNIISFNAAI TLWTIW+ RN LIF EKDS+YQN WE++
Sbjct: 147 GNAKNIISFNAAIATLWTIWIRRNNLIFEEKDSSYQNAWEDI 188

[Close]

BLAST of MELO3C031551 vs. ExPASy TrEMBL
Match: A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.7e-44
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M LNPNWCISCRSSNEDMNHLFI CP AH+ W LWSSETGIP+ NTNVKDLCLSLCRLTG
Sbjct: 384 MCLNPNWCISCRSSNEDMNHLFILCPTAHRFWNLWSSETGIPMANTNVKDLCLSLCRLTG 443

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEEL 103
            +AKNIISFNAA  TLWTIW+ RN L+F EKDS+YQN WE++
Sbjct: 444 GNAKNIISFNAARATLWTIWIRRNNLLFAEKDSSYQNAWEDI 485

[Close]

BLAST of MELO3C031551 vs. ExPASy TrEMBL
Match: A0A5D3D4A8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00920 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.5e-43
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M L+PNWCISCRSSNEDMNHLFIHCPKAHKLWQ WS+E GI VTN NVKDLCLSLCRLTG
Sbjct: 11  MCLSPNWCISCRSSNEDMNHLFIHCPKAHKLWQQWSTEMGILVTNPNVKDLCLSLCRLTG 70

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDST 95
           SSAKNIISFNAAI  LWTIWVGRNKLIFTEK+ST
Sbjct: 71  SSAKNIISFNAAIAALWTIWVGRNKLIFTEKNST 104

[Close]

BLAST of MELO3C031551 vs. ExPASy TrEMBL
Match: A0A5A7VB56 (Lupeol synthase-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001710 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.2e-42
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M L+PNWCISCRSSNEDMNHLFIHCPKAHKLWQ WS+E GI VTN NVKDLCLSLCRLTG
Sbjct: 294 MCLSPNWCISCRSSNEDMNHLFIHCPKAHKLWQQWSTEMGILVTNPNVKDLCLSLCRLTG 353

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDST 95
           SSAKNIISFNAAI  LWTIWVGRNKLI TEK+ST
Sbjct: 354 SSAKNIISFNAAIAALWTIWVGRNKLILTEKNST 387

[Close]

BLAST of MELO3C031551 vs. ExPASy TrEMBL
Match: A0A5D3DZM5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00720 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.1e-41
Identity = 76/103 (73.79%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MFLNPNWCISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIPVTNTNVKDLCLSLCRLTG 60
           M LNP+WCISCRSSNEDMNHLFI CP A  LW +WSSETG P+ NTNVKDLCL LCR TG
Sbjct: 562 MSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPMVNTNVKDLCLQLCRQTG 621

Query: 61  SSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNTWEELH 104
            +AKNIISFN+AI TLWTIW+ RN LIF +KDS+Y N WE++H
Sbjct: 622 RNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDMH 664

[Close]

BLAST of MELO3C031551 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 32/99 (32.32%), Postives = 47/99 (47.47%), Query Frame = 0


Query: 8   CISCRSSNEDMNHLFIHCPKAHKLWQLWSSETGIP--------VTNTNVKDLCLSLCRLT 67
           C  C   +E   HLF  C  A ++W+     +GIP        +T     +L LS C   
Sbjct: 56  CHRCCQEDETSQHLFFDCFYAQQVWR----ASGIPHQELRTTGITMETKMELLLSSC--- 115

Query: 68  GSSAKNIISFNAAIVTLWTIWVGRNKLIFTEKDSTYQNT 99
             + +    FN AI  LW +W  RN+L+F +K  ++QNT
Sbjct: 116 -LANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNT 146

The following BLAST results are available for this feature:

BLAST of MELO3C031551 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10888.1	6.5e-45	82.35	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0067274.1	1.6e-43	79.41	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK18371.1	1.3e-42	89.36	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0063656.1	6.7e-42	88.30	lupeol synthase-like isoform X4 [Cucumis melo var. makuwa]	[more]
TYK28859.1	1.3e-40	73.79	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C031551 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CI43	3.1e-45	82.35	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7VIU9	7.7e-44	79.41	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3D4A8	6.5e-43	89.36	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7VB56	3.2e-42	88.30	Lupeol synthase-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DZM5	6.1e-41	73.79	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MELO3C031551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25270.1	2.6e-07	32.32	Ribonuclease H-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031551.1	MELO3C031551.1	mRNA