MELO3C031518.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031518.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionZinc finger CCCH domain-containing protein 19
Locationchr05: 24742067 .. 24743522 (+)
RNA-Seq ExpressionMELO3C031518.jh1
SyntenyMELO3C031518.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTGTGAAAAGAAATGTACCGTATGCCCGTTTCTCCACATTCAAAGCCTCGGCTCGCAACCTCTCTACTTCCCTTGCAAGGGCAATCAGATTCATTTCTGTTGCTTTCATTTGCTCTACTTGTTCAATGTTCCTACCTTTTTCATGCTCAAATGTAGCTCTGCGTACCGGGTTAATAAATAAAAAAGAATTAGCACATTAAGTTGAAAATTCAAATTGAGAATCAAATATCAAATATGCATTTCATCCAGATAGAAAAAGAATTCATAGCACATCACCAATTGCCAAGTAACAAATAATTAATGCCGTTAAACCACCGATTGACCCAAAAGTTTAAGCTAATGGATGAAGGCATATTTAACTTTATATCATCATGCACTCCCCTCACTAGTGGATTTGAAACAAATTTCATTGATAAAAATGAAATAATGGAGTAAAAACACCAAGACACGAGACACCAATACTTGTGATTACAAAAAAAGTACCTTTTTAGATAGAAATTGATGCTTCAGAAAAAAAAAGTATTTACATTTACATCAATACATGGCATTAGAAAGCAATGAATCCATAAAACTCTAGGGTTGAAAAAGGTTCCTTAAAAAGTTTTTTTTATAAGAAACATTTCGTTAATAAGATAAAATAAGGGGAAACCCCAAGCGCCTAGAATTGATTACAAAAAGAGCGTCAATTGGAAACTAAGAAAGAAAGGCTAAAGTTCTTAAATGGGTGCCCAATTTTGTACCAAGAAAAAGTCATGGACAGAACAATGTCAAAAGAAGAAGTAAATAGGAAGCAAAATCCTGAAAGAGACGCCTATTGCACTTGCCCTATAAAGTCCGAAAATAAGCCTGAAGAATAGCCAATCAAATAATCTTCTTGCAGTCAAAGAATGGGTGTCCCGCCATAAGAGAGTTCAGGATGACATAAATATTGTTGGAATGAGCAGTAGACCATCCAAAAGCCTCCAAAATGTTGTCCCAAAATTGCAGAGCAAAAGGACAATGAATAAAAAGATGAGCAGGAGACTCAACACGAGCAAAACACATAAAACACCAAGATGGAGAAAGAGACGTAGAAGGCATACGACACCAGAGATGACCAGCAATGTTAATGGCATTATGGCTAAGCTCCCAAAAGTCAACTATTGGGGTGGAAGAGCCAAGCCACTTAAGTACAACATTGGTCACCCTATTCTAACCAATGCGGAACAAAGACAGCCCGTACTACTTTGGTTCCTAACAGAAAGCTTCGTTCAAAGCAAGTCACAAAGTCTTCTCCATTCTGTAGCATGGAATGAATGGCCAACGAAAATGGGTGCAAGAATATCAAAGATGTTGTTAGGCAAAATCAAGGACCAACTAAAAGCATCCACAGCCGTTGCCCAATATCTAGAAGCAGGACACCAATGGCAAAAAGATGTTCAGGATGCTTCAAATCAACAGAACACATAA

mRNA sequence

ATGAAAAGTGTGAAAAGAAATGTACCGTATGCCCGTTTCTCCACATTCAAAGCCTCGGCTCGCAACCTCTCTACTTCCCTTGCAAGGGCAATCAGATTCATTTCTGTTGCTTTCATTTGCTCTACTTGTTCAATGTTCCTACCTTTTTCATGCTCAAATGTAGCTCTGCGTACCGGTCCGAAAATAAGCCTGAAGAATAGCCAATCAAATAATCTTCTTGCAGTCAAAGAATGGGTGTCCCGCCATAAGAGAGTTCAGGATGACATAAATATTGTTGGAATGAGCAGTAGACCATCCAAAAGCCTCCAAAATGTTGTCCCAAAATTGCAGAGCAAAAGGACAATGAATAAAAAGATGAGCAGGAGACTCAACACGAGCAAAACACATAAAACACCAAGATGGAGAAAGAGACGTAGAAGGCATACGACACCAGAGATGACCAGCAATGTTAATGGCATTATGGCTAAGCTCCCAAAAGTCAACTATTGGGGTGGAAGAGCCAAGCCACTTAAGTACAACATTGGTCACCCTATTCTAACCAATGCGGAACAAAGACAGCCCGTACTACTTTGGTTCCTAACAGAAAGCTTCGTTCAAAGCAAGTCACAAAGTCTTCTCCATTCTGTAGCATGGAATGAATGGCCAACGAAAATGGGTGCAAGAATATCAAAGATGTTGTTAGGCAAAATCAAGGACCAACTAAAAGCATCCACAGCCGTTGCCCAATATCTAGAAGCAGGACACCAATGGCAAAAAGATGTTCAGGATGCTTCAAATCAACAGAACACATAA

Coding sequence (CDS)

ATGAAAAGTGTGAAAAGAAATGTACCGTATGCCCGTTTCTCCACATTCAAAGCCTCGGCTCGCAACCTCTCTACTTCCCTTGCAAGGGCAATCAGATTCATTTCTGTTGCTTTCATTTGCTCTACTTGTTCAATGTTCCTACCTTTTTCATGCTCAAATGTAGCTCTGCGTACCGGTCCGAAAATAAGCCTGAAGAATAGCCAATCAAATAATCTTCTTGCAGTCAAAGAATGGGTGTCCCGCCATAAGAGAGTTCAGGATGACATAAATATTGTTGGAATGAGCAGTAGACCATCCAAAAGCCTCCAAAATGTTGTCCCAAAATTGCAGAGCAAAAGGACAATGAATAAAAAGATGAGCAGGAGACTCAACACGAGCAAAACACATAAAACACCAAGATGGAGAAAGAGACGTAGAAGGCATACGACACCAGAGATGACCAGCAATGTTAATGGCATTATGGCTAAGCTCCCAAAAGTCAACTATTGGGGTGGAAGAGCCAAGCCACTTAAGTACAACATTGGTCACCCTATTCTAACCAATGCGGAACAAAGACAGCCCGTACTACTTTGGTTCCTAACAGAAAGCTTCGTTCAAAGCAAGTCACAAAGTCTTCTCCATTCTGTAGCATGGAATGAATGGCCAACGAAAATGGGTGCAAGAATATCAAAGATGTTGTTAGGCAAAATCAAGGACCAACTAAAAGCATCCACAGCCGTTGCCCAATATCTAGAAGCAGGACACCAATGGCAAAAAGATGTTCAGGATGCTTCAAATCAACAGAACACATAA

Protein sequence

MKSVKRNVPYARFSTFKASARNLSTSLARAIRFISVAFICSTCSMFLPFSCSNVALRTGPKISLKNSQSNNLLAVKEWVSRHKRVQDDINIVGMSSRPSKSLQNVVPKLQSKRTMNKKMSRRLNTSKTHKTPRWRKRRRRHTTPEMTSNVNGIMAKLPKVNYWGGRAKPLKYNIGHPILTNAEQRQPVLLWFLTESFVQSKSQSLLHSVAWNEWPTKMGARISKMLLGKIKDQLKASTAVAQYLEAGHQWQKDVQDASNQQNT
Homology
[Close]
BLAST of MELO3C031518.jh1 vs. NCBI nr
Match: KAA0034089.1 (phytochrome-associated serine/threonine-protein phosphatase [Cucumis melo var. makuwa] >TYK15828.1 phytochrome-associated serine/threonine-protein phosphatase [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.46e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 146 MTSNVN----GIMAKL----PKVNYWGGRAKPLKYNIGHPILTNAEQRQPVLLWFLT 194
           MTSN++    G ++ L    PK + W GRAKPLKY I HPIL+N  QR P++ WFLT
Sbjct: 276 MTSNISNLSVGYLSTLENYTPKASCWDGRAKPLKYQIRHPILSNVGQRYPIIPWFLT 332

[Close]
BLAST of MELO3C031518.jh1 vs. NCBI nr
Match: TYK22368.1 (zinc finger CCCH domain-containing protein 19 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.05e-05
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 157  LPKVNYWGGRAKPLKYNIGHPILTNAEQRQPVLLWFLT-----ESFVQSKSQSLLHS 208
            L   N+WGGR K  +Y+IGHPILTN  QR P++ WFLT     ++ + + + ++LHS
Sbjct: 1007 LRSANHWGGRVKLFEYHIGHPILTNVGQRHPIIPWFLTIPHSWKAEIAAATSTVLHS 1063

[Close]
BLAST of MELO3C031518.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SY35 (Serine/threonine-protein phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003330 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.09e-07
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 146 MTSNVN----GIMAKL----PKVNYWGGRAKPLKYNIGHPILTNAEQRQPVLLWFLT 194
           MTSN++    G ++ L    PK + W GRAKPLKY I HPIL+N  QR P++ WFLT
Sbjct: 276 MTSNISNLSVGYLSTLENYTPKASCWDGRAKPLKYQIRHPILSNVGQRYPIIPWFLT 332

[Close]
BLAST of MELO3C031518.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DFY3 (Zinc finger CCCH domain-containing protein 19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00910 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.11e-06
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 157  LPKVNYWGGRAKPLKYNIGHPILTNAEQRQPVLLWFLT-----ESFVQSKSQSLLHS 208
            L   N+WGGR K  +Y+IGHPILTN  QR P++ WFLT     ++ + + + ++LHS
Sbjct: 1007 LRSANHWGGRVKLFEYHIGHPILTNVGQRHPIIPWFLTIPHSWKAEIAAATSTVLHS 1063

The following BLAST results are available for this feature:
BLAST of MELO3C031518.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034089.11.46e-0652.63phytochrome-associated serine/threonine-protein phosphatase [Cucumis melo var. m... [more]
TYK22368.11.05e-0545.61zinc finger CCCH domain-containing protein 19 [Cucumis melo var. makuwa][more]
BLAST of MELO3C031518.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031518.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SY357.09e-0752.63Serine/threonine-protein phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DFY35.11e-0645.61Zinc finger CCCH domain-containing protein 19 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C031518.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031518.jh1.t1MELO3C031518.jh1.t1mRNA