MELO3C031508 (gene) Melon (DHL92) v4

Overview
NameMELO3C031508
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptioncentromere/kinetochore protein zw10 homolog
Locationchr05: 23395671 .. 23400147 (+)
RNA-Seq ExpressionMELO3C031508
SyntenyMELO3C031508
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCCGCATCGTTGGACACCGCACTGCTGGACACCGCACCGCTGGACGCCGCCTTCTACGTCGCACCAGACCCACTTTCCTTCTACCGCCCCTGTCACAGCCACCATTGGGGTTTCTTTGAAAACCGAACTCGAGGGAGAAACTAAGGCGAGCCTCAACCTTTTCTAGGGTTCACTGCCACTCAGCTTCACCATGCATAGAATCACCGGTTCATGACTCAAGTCGCTCAAGGTCAGTCTAATCCTTCTTTTTGTGTTTAATTAATCTCTTTTCTGAATCAAAGAAAGGTGTTTCCGTTATAGATCTGGTCTTTGTTTTGTTTATGTTGGCTACTCTTTAATGTGCTCTAAACATGGTTTCTTGGTGACGATTTAAAGCTTGACTATCCTTTTTGATTCTGTATTGTTTACGTTATTGGATGCTTGGGATAAAAAAATGCTTATGTTGCTTCTACTTGGTTGTTTTGAGAGATAGGCATTCATTTTTATGTCTTTGAGAAATGATTATGTGATTGACTCGTATTGTCAATGTAGTTGTACTTTGCATCTGGGAAGAGGAAAGAAATTTTAGCAAAGGCCAGAAATTTGCTTCTTAAATGTGATTTCTCTGTCCCTAAAGTAAGTTCTTAGGACATGATAATATTCCCTTATAATTATTATATTATGGTTGTTTTATGTAATGAATATGAATACAGGAGCTCACAATCAAAGGTGATAAGCAAAACTAGAATGAAATGGTTAAAATAAAGCCTTTCAAATCAAGTTGTTGACTTACTTTTCCTTTGGATTGCAAGTCTCCGTCTGCTTATTTTAAGCCTGAACAATCTTCAAGAAGCGTCATTTCGCAGAAATGGGCAGATTTTCTTTGCCTCGGCAGCTTCTGTTTAGGGATGTTTGTAACAACCCCACTTTCCGGACTAAGCCGAGGTCACTACTCAATACTAAGACTCGACCACAAAACATAAAAAAGTCATAACGGACCGGTTACGATTCATTAAAAACGTTAGAAATATTATAAAAGTAGTTTCGGGCCCTATTTTAAATCACAGTCACGAGAATTTCAAATGCAATACTCAAGTCATCAAACTCAAAATCACAAAACCAAATATTCTAACAAAAAACATCAGCGGAAGCATAAAGAACCAGACGCCTCCATATGGCCTTCACGCATCCTTCTTGCCCCTCGTCGGTCTGCCCCTAGCTGTACCCTTACCTGCAAAGTTAAAGAAGAAAAGGGTGAGTATAAAATATACCCAGTAAGGGACCCACTACTGGGCCCATTAGGGAACAACAGTTAACTTCCTATTCAGGGGTACCCTACATAACAGTCTAGTGGTTCCGTAGAACGCACATATCAGTCTCGTGATCCCGAAGGATGCACGTATCAGTCTAGTGATCCCGAAAGATACACCTATCAGTCTAGTGATCCCGAGGGATGTACATATCAGTTTAGTGCTCCCGAAGGATGCACGTATCAGTCTAGTGCTCCCGAAGGATGCACATATCAGTCTAGTGCTCCCGAAGGATACACCTATCAGTCTAGTGATCCCGAGGGATGTATATATCAGTTTAGTGCTCCCGAAGGATGCACGTATCAGTCTAGTGCTCCCGAAGGATGCACCTATCAGTCTAGTGCTCCCGAAGGATGCACATATCCGTAAGGTACACTACCCCATAGATGAAGCTAACCGTTACCCCTCAGTCCATACTAAACCGTCTACAACAGTCATACCCCAACAACATTCATATTACAATTTCGCCATAGGCTTCGCCAGTCAGATAGTATAGGTTTAAACAACTACATCCGCAGTTGCTATATGCGTTTCCGCTTCACACATCATTGTGATATCCCTAGATCCAGTCAACTAGTCAATCAAAATCGGACTCACCGTCCTTCCACGACCAGACTCCATGACCAAAGTCCAAACAAAAGACTACCACGTGCCTAACCGTAAAACTTTAAGGTCCATCGACATACCATTCCAATCCACAACGTAGCCCATTAACATAACTACAATATACCGAACATCTGGCATCGGTGTCTATCCGTAAACAACTCCTTACATCCGATGGCACACAAGCTACAACTAGCGGTCGCGTTACCTTTATATCAGACAAGAGCATAGCAACGATACTTAAAAGTCAAACACACATACATTTATTCAGTACAGTTACTAACGTGTAATCCCCTGTGGATTACTACGTTTCCAACCTCGATCCGAGGTCCAGTAGTAGGAAAACCCTTACCTGATACTTGGTTATGCCCCCCGATCGAGTCCACGCGCAATGGATCCACCTAAACGAAAACACAAGGGTCTTAAACGAGGATACTAGTAGAAGTCATTTTAAATGGTCCTAAGCAACATCCGTTGACTTACCTCAGGAAAGGAAAGCTATTTCCAAATTAACTTGCCGTGGGACCGTGAACTTGAGCGTCAAACCCCTATTACCTTCAAGGAACGAAAGATGGGATCCAGTCTTACTCCAATATTCAAACTCGAAACGATTATAGCAACGTTGGGTAAATTACCAAAATGATCCTTACTGAAGACTCGCCGTGACCCGAAGTGGAGGGAGAAAAATATGGCTTAGGTGGCTCGACTCGACTTGGCTCACCCTCGGCTCGGCTCGGCTCGGCCTCAGCTCGGCTCGGCTCGCGGTTCGGCTCAACTCGGCTTACGGCTCGGCTCAACTCAGATTGCGGCTCGACTCAACTCGGCTTGCGGCTCGACTCGCGGCTCGACTCAACTCGGCTTGCGGCTCGGCTCAACTCGGCTTGCAGCTCGGCTCGCGGCTCGCTCGATTCGGATTCGTTGCTCGGGTCGGCTTCACTTCGCGGCTCGAGTTCAACTCCTTTCTCCTTCCGACAACGACGGCGGTAGAAGGTAGCTCCCCTCGGTGTTCTGTCTGCGTCAGAAACACAAGATGAGAAGGGAGAAGCCGCCGGCGGTGGCAGAGACGAAGAGAGAGAGAGAGAGAGACGTCGGCTGCAGATGAACGATGCCGATTCGGGGATTCCGTCAATGATGTGCGGCTACGAAGACGGCAGACGGTGCAAACGCGCGGATGATGGCTGCGTTCGTCTGGTGAAGAAGCTGAAGAGAAGAAGAAGAAGAACGGCGTGGCGTTGGCTTCGTGAAGGCAGTCGAGGACGCGCAGACGGAGGTGGAGACATGAATGGAGGAGAAAGGATGGAGACGGCGGCTGTGGACGATGTAGGAAGAAGAAGAAGATGGAACGGCTGGGGGGGTGTCGCGCGCGGCTAGGGTTGATTTAAAAAAAAATTCTTATTATATATATATATATTAAATAAAATAAATAAATAAAAATAATAATAATATAAATGATAAAATATTAAATAATAATAATAAAATTAATAATACAATATTAATATTAATTAATTATAATAATATTAATATCAAATAATGAATATACTATTAAATAAACATAAATGTATTAATATTAAATTATAAAGATAATAATAAATGATAATAATAATATAAATAATATTATATTATTATTTTATCATTTACAAAATTTTAAAATCCTGAAAAATTCACATAAAATGCTAAAATTTTACCTCGAAAATTCGGGGCGTTACAATGTTCTTCACAAACAGGTTCGTATCAGTAAGAAAAATTTGATGGGGGGTGTGTTCAATTAGCTTTGATCGATGGGTTGAAATGGTTTCTCTTGGATTCCTAGGTTTTAGGTTCCAATTTGGGTGTTCTCTTTTTGGGTTTTGTATTTATTTGGGGAAACATTGCCCATTTTTCATTTATTAAATGTAGCCGACAGTATTAATGTTCTTGGTTTTTTGTATTTTTGTTTGTTGATTAAAGTTGTATATTCTGAAAAATTGATCACCAGCAGTTATAGCCCTATTAATACGATTTTTCTTTTTTTTTTTTCTATTTCGTTCCACCATCGAGTTGTTTTCGTTTTCCTCCTCATTCTGATTGGGTGAAGAACTGTTTCTTTTCACCATTTCCTCATTGAATCAAGATTTAGACAAAACCTTGGGTTGTTTATAGATTTATGGATTTGATTTCGTTGTTATCATGAGTATTCTTATAACATCCACCGTCAATTATGGGAAAAAGGACGTCTGTTTTGAGAAGCTTAAGAATCAGCTCTATCGGGAAGATCGTTACAATGTTTTTTTTTCCTTAAAAAGAAGAGATAAACTGAAGATCATATTCAAATTGCTTGTAGGATGTGGAATGTTCCAGAACCTAAAGGAATCACTCGAACAACGCCATTTGAAGCCGAAAAGTTAAAGTTAGTTTCATAAGGCTGTGGTCCGAAATCGATAAGCATCTTCAAAGCTGTTTTCGTTACTTGTCGAAAAGGATACATGTTCAAGAAAGTAATTACATTGCTACTTTTATATTTTCTAGTTGGATGAGAAGGAAGTAAAGCGCGCGTCGAAAGATATTTTCAAGGAAGTCTCTAAGACTCACAATGCTCTACAGTGA

mRNA sequence

ACGCCGCATCGTTGGACACCGCACTGCTGGACACCGCACCGCTGGACGCCGCCTTCTACGTCGCACCAGACCCACTTTCCTTCTACCGCCCCTGTCACAGCCACCATTGGGTTGTACTTTGCATCTGGGAAGAGGAAAGAAATTTTAGCAAAGGCCAGAAATTTGCTTCTTAAATGTGATTTCTCTGTCCCTAAATTGGATGAGAAGGAAGTAAAGCGCGCGTCGAAAGATATTTTCAAGGAAGTCTCTAAGACTCACAATGCTCTACAGTGA

Coding sequence (CDS)

ACGCCGCATCGTTGGACACCGCACTGCTGGACACCGCACCGCTGGACGCCGCCTTCTACGTCGCACCAGACCCACTTTCCTTCTACCGCCCCTGTCACAGCCACCATTGGGTTGTACTTTGCATCTGGGAAGAGGAAAGAAATTTTAGCAAAGGCCAGAAATTTGCTTCTTAAATGTGATTTCTCTGTCCCTAAATTGGATGAGAAGGAAGTAAAGCGCGCGTCGAAAGATATTTTCAAGGAAGTCTCTAAGACTCACAATGCTCTACAGTGA

Protein sequence

TPHRWTPHCWTPHRWTPPSTSHQTHFPSTAPVTATIGLYFASGKRKEILAKARNLLLKCDFSVPKLDEKEVKRASKDIFKEVSKTHNALQ
Homology
[Close]
BLAST of MELO3C031508 vs. NCBI nr
Match: TYK00901.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 49/92 (53.26%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 35  TIGLYFASGKRKEILAKARNLLLKCDFSVPK----------------------------- 91
           ++ LYFASGKRKE LAKARNLLLKCDFSV K                             
Sbjct: 87  SLKLYFASGKRKEFLAKARNLLLKCDFSVLKELTIKAWTIFKKRHFVEMGRFSLPWQLLF 146

[Close]
BLAST of MELO3C031508 vs. NCBI nr
Match: KAA0066383.1 (uncharacterized protein E6C27_scaffold21G004570 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 49/92 (53.26%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 35  TIGLYFASGKRKEILAKARNLLLKCDFSVPK----------------------------- 91
           ++ LYFASGKRKE LAKARNLLLKCDFSV K                             
Sbjct: 87  SLKLYFASGKRKEFLAKARNLLLKCDFSVLKELTIKAWTIFKKRHFVEMGRFSLPWQLLF 146

[Close]
BLAST of MELO3C031508 vs. NCBI nr
Match: TYK14975.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 38 LYFASGKRKEILAKARNLLLKCDFSVPK 66
          LYFASGKRKEILAKARNLLLKCDF VPK
Sbjct: 50 LYFASGKRKEILAKARNLLLKCDFFVPK 77

[Close]
BLAST of MELO3C031508 vs. NCBI nr
Match: KAA0054497.1 (centromere/kinetochore protein zw10-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 36  IGLYFASGKRKEILAKARNLLLKCDFSVPK 66
           + ++FASGKRKEILAKARNLLLKCDFSVPK
Sbjct: 463 VEVHFASGKRKEILAKARNLLLKCDFSVPK 492

[Close]
BLAST of MELO3C031508 vs. NCBI nr
Match: XP_008456395.1 (PREDICTED: centromere/kinetochore protein zw10 homolog [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 36  IGLYFASGKRKEILAKARNLLLKCDFSVPK 66
           + ++FASGKRKEILAKARNLLLKCDFSVPK
Sbjct: 392 VEVHFASGKRKEILAKARNLLLKCDFSVPK 421

[Close]
BLAST of MELO3C031508 vs. ExPASy TrEMBL
Match: A0A5A7VE31 (DUF4094 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004570 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12
Identity = 49/92 (53.26%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 35  TIGLYFASGKRKEILAKARNLLLKCDFSVPK----------------------------- 91
           ++ LYFASGKRKE LAKARNLLLKCDFSV K                             
Sbjct: 87  SLKLYFASGKRKEFLAKARNLLLKCDFSVLKELTIKAWTIFKKRHFVEMGRFSLPWQLLF 146

[Close]
BLAST of MELO3C031508 vs. ExPASy TrEMBL
Match: A0A5D3BM54 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00630 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12
Identity = 49/92 (53.26%), Postives = 52/92 (56.52%), Query Frame = 0 

Query: 35  TIGLYFASGKRKEILAKARNLLLKCDFSVPK----------------------------- 91
           ++ LYFASGKRKE LAKARNLLLKCDFSV K                             
Sbjct: 87  SLKLYFASGKRKEFLAKARNLLLKCDFSVLKELTIKAWTIFKKRHFVEMGRFSLPWQLLF 146

[Close]
BLAST of MELO3C031508 vs. ExPASy TrEMBL
Match: A0A5D3CTX2 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00060 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-05
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 38 LYFASGKRKEILAKARNLLLKCDFSVPK 66
          LYFASGKRKEILAKARNLLLKCDF VPK
Sbjct: 50 LYFASGKRKEILAKARNLLLKCDFFVPK 77

[Close]
BLAST of MELO3C031508 vs. ExPASy TrEMBL
Match: A0A5A7UIV3 (Centromere/kinetochore protein zw10-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002760 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 36  IGLYFASGKRKEILAKARNLLLKCDFSVPK 66
           + ++FASGKRKEILAKARNLLLKCDFSVPK
Sbjct: 463 VEVHFASGKRKEILAKARNLLLKCDFSVPK 492

[Close]
BLAST of MELO3C031508 vs. ExPASy TrEMBL
Match: A0A1S3C346 (centromere/kinetochore protein zw10 homolog OS=Cucumis melo OX=3656 GN=LOC103496345 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 36  IGLYFASGKRKEILAKARNLLLKCDFSVPK 66
           + ++FASGKRKEILAKARNLLLKCDFSVPK
Sbjct: 392 VEVHFASGKRKEILAKARNLLLKCDFSVPK 421

[Close]
BLAST of MELO3C031508 vs. TAIR 10
Match: AT2G32900.1 (centromere/kinetochore protein, putative (ZW10) )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 18/30 (60.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 36  IGLYFASGKRKEILAKARNLLLKCDFSVPK 66
           + ++FAS K+ EILAKARNLLL+C+F++P+
Sbjct: 392 VEVHFASRKKIEILAKARNLLLQCNFTIPQ 421

The following BLAST results are available for this feature:
BLAST of MELO3C031508 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK00901.11.8e-1153.26putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
KAA0066383.11.8e-1153.26uncharacterized protein E6C27_scaffold21G004570 [Cucumis melo var. makuwa][more]
TYK14975.11.3e-0496.43putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
KAA0054497.11.7e-0486.67centromere/kinetochore protein zw10-like protein [Cucumis melo var. makuwa][more]
XP_008456395.11.7e-0486.67PREDICTED: centromere/kinetochore protein zw10 homolog [Cucumis melo][more]
BLAST of MELO3C031508 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031508 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VE318.9e-1253.26DUF4094 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BM548.9e-1253.26Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G0... [more]
A0A5D3CTX26.2e-0596.43Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00... [more]
A0A5A7UIV38.0e-0586.67Centromere/kinetochore protein zw10-like protein OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3C3468.0e-0586.67centromere/kinetochore protein zw10 homolog OS=Cucumis melo OX=3656 GN=LOC103496... [more]
BLAST of MELO3C031508 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G32900.12.3e-0460.00centromere/kinetochore protein, putative (ZW10) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031508.1MELO3C031508.1mRNA