MELO3C031500 (gene) Melon (DHL92) v4

Overview
NameMELO3C031500
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr05: 22567428 .. 22568142 (-)
RNA-Seq ExpressionMELO3C031500
SyntenyMELO3C031500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAAATTTTTTTCTCAATGTATCTATGTACGTACACGATAAATGAAGCACTGATAGATCACTTCAAGCACAATGATCATTGGATGTGCTTATGGTTTTTGTAACACATTTGATTGACATGTTTACGTTTATTTTACAGTACAACAAGTTCGTCACGAGCTCTTAAACATTTGTGGATGAAAGAGGAGTTTACCCTTGTTAAGTGTTTGGTGGAGTTGGTTTCCACTGGTGGCTGGAAATCGGACAACGGGACCTTCAGATTCGGGTACCTAGCATAGTTATAGAGAATAATGGCAGAGAAGTTGCTAGGCTGTAACATTTAGGGGACCTCGACAATTAATTATCGGATAAAGAGCTTGAAGAGAACATTTCAGGCCATATCATAAATGCGGGGCCTAACATGCAGTGGGTTTGGTTGGAACAATGAAGTCAAGTGCATCATTGCTGAGAAGGAATTGTTGGACACTTGGGTGAAGGTAAGCGATCTAATTTTGAACAACTGTTATTTGTTTATAATAGAAAATACAACGGATAATTTATATAAACATTTCCATAGAGCCATCCTGTTGCCAAGGGCCTCCTACACAAACCGTTTCCCTATTACGTCGACCTATGTTACGTATTCGGGAAAGGTCGTGCTACGGGAGCACGCACAGACTATGAGGGATTTTCCATTGATGATGAAAAACGATATGGAGATCACTATGATGTATAG

mRNA sequence

TGTAAATTTTTTTCTCAATGTATCTATGTACGTACACGATAAATGAAGCACTGATAGATCACTTCAAGCACAATGATCATTGGATGTGCTTATGGTTTTTGTAACACATTTGATTGACATGTTTACGTTTATTTTACAGTACAACAAGTTCGTCACGAGCTCTTAAACATTTGTGGATGAAAGAGGAGTTTACCCTTGTTAAGTGTTTGGTGGAGTTGGTTTCCACTGGTGGCTGGAAATCGGACAACGGGACCTTCAGATTCGGGTACCTAGCATAGTTATAGAGAATAATGGCAGAGAAGTTGCTAGGCTGTAACATTTAGGGGACCTCGACAATTAATTATCGGATAAAGAGCTTGAAGAGAACATTTCAGGCCATATCATAAATGCGGGGCCTAACATGCAGTGGGTTTGGTTGGAACAATGAAGTCAAGTGCATCATTGCTGAGAAGGAATTGTTGGACACTTGGGTGAAGAGCCATCCTGTTGCCAAGGGCCTCCTACACAAACCGTTTCCCTATTACGTCGACCTATGTTACGTATTCGGGAAAGGTCGTGCTACGGGAGCACGCACAGACTATGAGGGATTTTCCATTGATGATGAAAAACGATATGGAGATCACTATGATGTATAG

Coding sequence (CDS)

ATGCGGGGCCTAACATGCAGTGGGTTTGGTTGGAACAATGAAGTCAAGTGCATCATTGCTGAGAAGGAATTGTTGGACACTTGGGTGAAGAGCCATCCTGTTGCCAAGGGCCTCCTACACAAACCGTTTCCCTATTACGTCGACCTATGTTACGTATTCGGGAAAGGTCGTGCTACGGGAGCACGCACAGACTATGAGGGATTTTCCATTGATGATGAAAAACGATATGGAGATCACTATGATGTATAG

Protein sequence

MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATGARTDYEGFSIDDEKRYGDHYDV
Homology
BLAST of MELO3C031500 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 8.0e-22
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRG +CSGFGWN E +CIIAE++L D+W+KSHP AKGLLHK FPYY DL YVFGK RATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARTD 65
           AR++
Sbjct: 144 ARSE 147

BLAST of MELO3C031500 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRG +CSGFGWN E +CIIAE++L D+WVKSHP  KGLLHK FPYY DL YVFGK RATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  ARTD 65
           AR++
Sbjct: 426 ARSE 429

BLAST of MELO3C031500 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRGL CSGFGWN+E KCI+AEKEL D WV+SHP AKGLL+KPFPYY +L YVFG+ RATG
Sbjct: 84  MRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPEAKGLLNKPFPYYDELTYVFGRDRATG 143

Query: 61  ARTDYEGFSIDDEKRYGDHYD 82
                E F+       GD YD
Sbjct: 144 RFA--ETFADVGSNEPGDGYD 162

BLAST of MELO3C031500 vs. NCBI nr
Match: KAA0025858.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-21
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRGL CSGFGWN+E KCI+AEKEL D WV+SHP AKGLL+KPFPYY +L YVFG+ RATG
Sbjct: 84  MRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 143

BLAST of MELO3C031500 vs. NCBI nr
Match: KAA0049911.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-21
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRG TCSGFGWN+E KCIIAEKEL D WV+SHP AKGLL+KPFPYY +L YVFG+ RATG
Sbjct: 84  MRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFPYYDELTYVFGRDRATG 143

BLAST of MELO3C031500 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRG +CSGFGWN E +CIIAE++L D+W+KSHP AKGLLHK FPYY DL YVFGK RATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARTD 65
           AR++
Sbjct: 144 ARSE 147

BLAST of MELO3C031500 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRG +CSGFGWN E +CIIAE++L D+W+KSHP AKGLLHK FPYY DL YVFGK RATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  ARTD 65
           AR++
Sbjct: 144 ARSE 147

BLAST of MELO3C031500 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.6e-22
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRG +CSGFGWN E +CIIAE++L D+WVKSHP  KGLLHK FPYY DL YVFGK RATG
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  ARTD 65
           AR++
Sbjct: 426 ARSE 429

BLAST of MELO3C031500 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRGL CSGFGWN+E KCI+AEKEL D WV+SHP AKGLL+KPFPYY +L YVFG+ RATG
Sbjct: 84  MRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPEAKGLLNKPFPYYDELTYVFGRDRATG 143

Query: 61  ARTDYEGFSIDDEKRYGDHYD 82
                E F+       GD YD
Sbjct: 144 RFA--ETFADVGSNEPGDGYD 162

BLAST of MELO3C031500 vs. ExPASy TrEMBL
Match: A0A5A7SI64 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001320 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1   MRGLTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATG 60
           MRGL CSGFGWN+E KCI+AEKEL D WV+SHP AKGLL+KPFPYY +L YVFG+ RATG
Sbjct: 84  MRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 143

BLAST of MELO3C031500 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 19/57 (33.33%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 7   SGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFGKGRATGART 64
           +GF W+     +IA+ ++ +T++++HP A+    K  P Y +LC++FGK  + G  T
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYT 455

BLAST of MELO3C031500 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 18/51 (35.29%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 4   LTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFG 55
           L   GF W+NE + + A+  +   ++K+H  A+  + +P PYY DLC + G
Sbjct: 255 LRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

BLAST of MELO3C031500 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 18/51 (35.29%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 4   LTCSGFGWNNEVKCIIAEKELLDTWVKSHPVAKGLLHKPFPYYVDLCYVFG 55
           L   GF W+NE + + A+  +   ++K+H  A+  + +P PYY DLC + G
Sbjct: 255 LRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008441954.18.0e-2273.44PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0062747.11.8e-2173.44retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... [more]
KAA0050293.13.0e-2164.20retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025858.15.2e-2176.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049911.16.8e-2178.33retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U0H73.9e-2273.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L33.9e-2273.44uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3DG228.6e-2273.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3081.5e-2164.20Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SI642.5e-2176.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT2G24960.22.7e-0733.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.11.7e-0635.29unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.21.7e-0635.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 5..61
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 5..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031500.1MELO3C031500.1mRNA