MELO3C031479 (gene) Melon (DHL92) v4

Overview
NameMELO3C031479
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionATP citrate synthase
Locationchr05: 20909122 .. 20911662 (-)
RNA-Seq ExpressionMELO3C031479
SyntenyMELO3C031479
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCAACCATCTCCAAACTCTTCGTGGCGTTTTGTCTGGTTAGGTTTTTTGTTCATTTTTCCTAAGAAATCTATCTTTTTCTAAGCTAATTATACATTATTGTACTTTTCATACTTGGATTTGGAAAATAGTTGTTGTTTTAGGGAGAATGGTTATCCTGGATATTTTCTATGGACTTCATTATCTGTTGAAATCGAGGTAGAAAAATGTTATGAAGTTTGATCTTAGTCTATGGGCATTTTATTTTCTGGTTTTAGGTATCTGTATATCTTCAGTATTTTTCTAAAAGAAATATTTCTAAGACTTTTCTCAAATCCTTTCTTCAGGTTCCTGATGACGGACTTCCTCTGGGTTAGGAAATTGAAATTGCAGTTGACTTTACTACCCCTCCATTTTGTGGTTAATACACCTCGTACTAGAGTATGACATCTCCATCTGGCTACAAACTTGGGCAACAACTTTGGGTTCTTATTTAGGTATTTATTATATGCTCATCTCAGTTTTTCTAGTGTTGTATGTAGATTATGCCATAAGTTCATGTGGCTGTTGCTAAACTCTTCATGTAGTCTTTTCCTACTTTTTTTCAGTGACTTAATGGTTCAAGGCTATCGAAAGTGTCCGCTTATGATGGAAAAAATTGTTTGATAGATTTATCATCAGTCAATTGTGTTTTTTGGCATGTCATCAATTTGTGTGTTTGCTTGTTGAATAAAGAAATGTGAAACCTCGTTGCCACCCTCCAAAGTAAGTGATGTACTGAGAAAATATACAAATATGATAATGTTTTATAATTTCACAGGGTGGAATGTCCAATGAGATGTACAACAATATTGCCCGTGTTACGGATGGAATTTACGAAGGTAAACTTCCTAACTTTTAACTAATCTTAGTCTAGGCAGTTTTGAAATATTAAATCTGTTTCACATTCTTTAATTGCACAGATATTGCAATAGGAGGTAATGTGTTTCCAGGTTCCAATCTTCTAGGCCAAAACTACAAAAAAGATTGTGCTAAGGTTGCAATACCAGGGTTGCAAGCATGTCTCACAACATCCCATTAAGGTTTGTATTCCAACAATATTATATGCTCATCTCAGTTTCTAATATTTGGTTAACTGTAAGACCGAACTTGCTGCCTTGGACCATGAAATTCAGGTCAGGCTTTTACCTTCCCCTTACACTTACAGTTAGCTTAGAATTATGCATTAGTGGTTTAACTAAGTATATTGAACTGGATGTTTTGTAACTAACAAAGATTTGGTTGAGATCAACAATGAAAAAGAAGTTTGAGCTTCTTTTCTCTATTTTTATGACAACTTTTTTTGGGACATCAATGTTCTGATCTTAGTAGTAGGGTCCTCCTTAGGAATGTCATACTCGTTCGCTATCTACTGCCATTAGTCTGCTGTCTGAACATCGTTTGGAAGTTGATTCTCCTATTTGTCATGTGAAGACCTTTGCTCCTTCTTCAAGTCGAGGGGACCCTAATTCTAATTGATTTTTTTCTGATTCAAAGTGGGAGTTGGTGATGGTGCAGGCTGATGTTGTTGCTGTTATTGTTGTCTTGTTCGGTTGAAGTTTGTTTTCCTTATGAGCTGTTTGTCTTTTAGTACTAGAAGTAGTTTTGTTGTTCCTTTTTGATGACTGAAGTAACATTTTGTTCGTGTTACGAGAAATGAAATCATCAGTGCTAAAGTCTGTGGTTTGCAACACATTGTTATCATTCGTTTTAGACATCAGCCAGAACGTGCGACACAGTTGAACAAGAAAAGAAATTCTTTTTGGACAAAAATGGAGAGTTTGTTGGAGTTTTTGTCTAAAAGATTTTATGAAATATCTTTGACTAAATATCTTTGATTGATGAATTAATTAAAAGACAAGATATATCTTTGATTAATGAATTAATTAAAAGAAGAGATATTCAAGAGATAAAAGATTTCCTACTATTTTAAGAATCTTGTTGAGAAAAGAAGATTTATACATATAATATATATGTATAAATAGGATGTTACGAGGTTGTTAAGCATGTGACGAAAAACTGAAAAACACAAGTTGAAGAAGATTGTTCACGTCAGTTGCCGTCTGCAGAAGCTACCGGATTCCAAAGGTATTATGATCTTATGTCTATAAGATCTCCATGTTGATCGTAGTCACAATAATTGATGAGTAACAGACGAAATAGTGATTTGTATGATTACGGAGATCTTTAGAGGGATCTAAAGACTTTGTCAAAGATATTCACTTATGTCTTCAGAGGGAGCCTGAAGCTAGATATCGTGAAGATAAATGATTCAGGGGGAGCCTGGAGTTTGATGTCAAGACACATGTTATTAAGTCAAATTATTGAACAGAGTACCATATGCTGTATTGATCTATATTGACTAAACTGAATATTAATAAAGATTACTTATCAGGGCTGTGCGTAGCTCCCCAGACGTAGGCGATATTGCCCGAACTGGTTTAACAAAGTTTCCTGTGTTATTCTTTTCTGCTGTCCCTCTAGCTATTACAATTGTTATTAGCTTTAGTATTAATTGA

mRNA sequence

ATGCCGCCAACCATCTCCAAACTCTTCGTGGCGTTTTGTCTGGTTAGGTTCCTGATGACGGACTTCCTCTGGGTTAGGAAATTGAAATTGCAGTTGACTTTACTACCCCTCCATTTTGTGGTTAATACACCTCGTACTAGAAAATGTGAAACCTCGTTGCCACCCTCCAAAGGTGGAATGTCCAATGAGATGTACAACAATATTGCCCGTGTTACGGATGGAATTTACGAAGATATTGCAATAGGAGGTAATGTGTTTCCAGGTTCCAATCTTCTAGGCCAAAACTACAAAAAAGATTGTGCTAAGACCGAACTTGCTGCCTTGGACCATGAAATTCAGTGGGAGTTGGTGATGGTGCAGGCTGATGTTGTTGCTGTTATTGTTGTCTTAGGGAGCCTGAAGCTAGATATCGTGAAGATAAATGATTCAGGGGGAGCCTGGAGTTTGATGTCAAGACACATGGCTGTGCGTAGCTCCCCAGACGTAGGCGATATTGCCCGAACTGGTTTAACAAAGTTTCCTGTGTTATTCTTTTCTGCTGTCCCTCTAGCTATTACAATTGTTATTAGCTTTAGTATTAATTGA

Coding sequence (CDS)

ATGCCGCCAACCATCTCCAAACTCTTCGTGGCGTTTTGTCTGGTTAGGTTCCTGATGACGGACTTCCTCTGGGTTAGGAAATTGAAATTGCAGTTGACTTTACTACCCCTCCATTTTGTGGTTAATACACCTCGTACTAGAAAATGTGAAACCTCGTTGCCACCCTCCAAAGGTGGAATGTCCAATGAGATGTACAACAATATTGCCCGTGTTACGGATGGAATTTACGAAGATATTGCAATAGGAGGTAATGTGTTTCCAGGTTCCAATCTTCTAGGCCAAAACTACAAAAAAGATTGTGCTAAGACCGAACTTGCTGCCTTGGACCATGAAATTCAGTGGGAGTTGGTGATGGTGCAGGCTGATGTTGTTGCTGTTATTGTTGTCTTAGGGAGCCTGAAGCTAGATATCGTGAAGATAAATGATTCAGGGGGAGCCTGGAGTTTGATGTCAAGACACATGGCTGTGCGTAGCTCCCCAGACGTAGGCGATATTGCCCGAACTGGTTTAACAAAGTTTCCTGTGTTATTCTTTTCTGCTGTCCCTCTAGCTATTACAATTGTTATTAGCTTTAGTATTAATTGA

Protein sequence

MPPTISKLFVAFCLVRFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTRKCETSLPPSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAKTELAALDHEIQWELVMVQADVVAVIVVLGSLKLDIVKINDSGGAWSLMSRHMAVRSSPDVGDIARTGLTKFPVLFFSAVPLAITIVISFSIN
Homology
[Close]
BLAST of MELO3C031479 vs. NCBI nr
Match: KAA0040863.1 (ATP-citrate synthase beta chain protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 9.7e-34
Identity = 79/99 (79.80%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 10  VAFCLVRFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTRKCETSLPPSKGGMSNEMYNNIA 69
           + F   RFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTR          GGMSNEMYNNIA
Sbjct: 3   ILFSGFRFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTR----------GGMSNEMYNNIA 62

Query: 70  RVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAKTELAAL 109
           RVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAK  +  L
Sbjct: 63  RVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAKVAIPGL 91

[Close]
BLAST of MELO3C031479 vs. NCBI nr
Match: CAD5334424.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 55  PSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           P  GGMSNEMYN +ARVTDGIYE IAIGG+VFPGS L
Sbjct: 167 PGSGGMSNEMYNTVARVTDGIYEGIAIGGDVFPGSTL 203

[Close]
BLAST of MELO3C031479 vs. NCBI nr
Match: CAB3472964.1 (unnamed protein product, partial [Digitaria exilis])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 56  SKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           +KGGMSNEMYN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 130 NKGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTL 165

[Close]
BLAST of MELO3C031479 vs. NCBI nr
Match: KAB5544644.1 (hypothetical protein DKX38_012756 [Salix brachista])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 55  PSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           P +GGMSNE+YN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 167 PMQGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTL 203

[Close]
BLAST of MELO3C031479 vs. NCBI nr
Match: KAG6765733.1 (hypothetical protein POTOM_029789 [Populus tomentosa])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 55  PSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           P +GGMSNE+YN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 270 PMQGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTL 306

[Close]
BLAST of MELO3C031479 vs. ExPASy Swiss-Prot
Match: Q9C522 (ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana OX=3702 GN=ACLB-1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-10
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           GGMSNEMYN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 177 GGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTL 210

[Close]
BLAST of MELO3C031479 vs. ExPASy Swiss-Prot
Match: Q93VT8 (ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ACLB-1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-10
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           GGMSNEMYN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 177 GGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTL 210

[Close]
BLAST of MELO3C031479 vs. ExPASy Swiss-Prot
Match: Q9FGX1 (ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana OX=3702 GN=ACLB-2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-09
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           GGMSNEMYN +ARVTDGIYE IAIGG+VFPGS L
Sbjct: 177 GGMSNEMYNTVARVTDGIYEGIAIGGDVFPGSTL 210

[Close]
BLAST of MELO3C031479 vs. ExPASy Swiss-Prot
Match: Q54YA0 (Probable ATP-citrate synthase OS=Dictyostelium discoideum OX=44689 GN=acly PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-08
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAKTELAALDHEIQWELV 117
           GG+SNEMYN ++R TDGIYE IAIGG+ FPGS L                 DH +++E  
Sbjct: 191 GGLSNEMYNVLSRCTDGIYEGIAIGGDAFPGSTL----------------TDHALRYE-- 246

Query: 118 MVQADVVAVIVVLGSL 134
             +   V +IV+LG L
Sbjct: 251 --KLPEVQMIVILGEL 246

[Close]
BLAST of MELO3C031479 vs. ExPASy Swiss-Prot
Match: Q32PF2 (ATP-citrate synthase OS=Bos taurus OX=9913 GN=ACLY PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNLL 93
           GGMSNE+ N I+R TDG+YE +AIGG+ +PGS  +
Sbjct: 654 GGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFM 688

[Close]
BLAST of MELO3C031479 vs. ExPASy TrEMBL
Match: A0A5A7TCM2 (ATP-citrate synthase beta chain protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00110 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.7e-34
Identity = 79/99 (79.80%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 10  VAFCLVRFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTRKCETSLPPSKGGMSNEMYNNIA 69
           + F   RFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTR          GGMSNEMYNNIA
Sbjct: 3   ILFSGFRFLMTDFLWVRKLKLQLTLLPLHFVVNTPRTR----------GGMSNEMYNNIA 62

Query: 70  RVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAKTELAAL 109
           RVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAK  +  L
Sbjct: 63  RVTDGIYEDIAIGGNVFPGSNLLGQNYKKDCAKVAIPGL 91

[Close]
BLAST of MELO3C031479 vs. ExPASy TrEMBL
Match: A0A7G2FJB4 (ATP citrate synthase OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS21725 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 55  PSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           P  GGMSNEMYN +ARVTDGIYE IAIGG+VFPGS L
Sbjct: 167 PGSGGMSNEMYNTVARVTDGIYEGIAIGGDVFPGSTL 203

[Close]
BLAST of MELO3C031479 vs. ExPASy TrEMBL
Match: A0A5N5LPA7 (ATP citrate synthase OS=Salix brachista OX=2182728 GN=DKX38_012756 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-08
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 55  PSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           P +GGMSNE+YN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 167 PMQGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTL 203

[Close]
BLAST of MELO3C031479 vs. ExPASy TrEMBL
Match: A0A4U5QW83 (Ligase_CoA domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000036380 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 55  PSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           P+ GGMSNE+YN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 113 PTAGGMSNELYNAIARVTDGIYEGIAIGGDVFPGSTL 149

[Close]
BLAST of MELO3C031479 vs. ExPASy TrEMBL
Match: A0A218WGE7 (ATP citrate synthase OS=Punica granatum OX=22663 GN=LOC116193013 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 40  VVNTPRTRKCETSLPPSKGGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           ++++   R          GGMSNEMYN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 159 IIHSKLYRPGSVGFVSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTL 210

[Close]
BLAST of MELO3C031479 vs. TAIR 10
Match: AT3G06650.1 (ATP-citrate lyase B-1 )

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-11
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           GGMSNEMYN IARVTDGIYE IAIGG+VFPGS L
Sbjct: 177 GGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTL 210

[Close]
BLAST of MELO3C031479 vs. TAIR 10
Match: AT5G49460.1 (ATP citrate lyase subunit B 2 )

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 58  GGMSNEMYNNIARVTDGIYEDIAIGGNVFPGSNL 92
           GGMSNEMYN +ARVTDGIYE IAIGG+VFPGS L
Sbjct: 177 GGMSNEMYNTVARVTDGIYEGIAIGGDVFPGSTL 210

The following BLAST results are available for this feature:
BLAST of MELO3C031479 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040863.19.7e-3479.80ATP-citrate synthase beta chain protein 1 [Cucumis melo var. makuwa][more]
CAD5334424.11.2e-0781.08unnamed protein product [Arabidopsis thaliana][more]
CAB3472964.11.2e-0786.11unnamed protein product, partial [Digitaria exilis][more]
KAB5544644.12.0e-0781.08hypothetical protein DKX38_012756 [Salix brachista][more]
KAG6765733.12.0e-0781.08hypothetical protein POTOM_029789 [Populus tomentosa][more]
BLAST of MELO3C031479 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C5227.7e-1088.24ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana OX=3702 GN=ACL... [more]
Q93VT87.7e-1088.24ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica OX=399... [more]
Q9FGX11.0e-0985.29ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana OX=3702 GN=ACL... [more]
Q54YA07.2e-0844.74Probable ATP-citrate synthase OS=Dictyostelium discoideum OX=44689 GN=acly PE=1 ... [more]
Q32PF21.2e-0560.00ATP-citrate synthase OS=Bos taurus OX=9913 GN=ACLY PE=2 SV=1[more]
BLAST of MELO3C031479 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TCM24.7e-3479.80ATP-citrate synthase beta chain protein 1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A7G2FJB45.8e-0881.08ATP citrate synthase OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS21725 PE=4 S... [more]
A0A5N5LPA79.8e-0881.08ATP citrate synthase OS=Salix brachista OX=2182728 GN=DKX38_012756 PE=4 SV=1[more]
A0A4U5QW831.7e-0781.08Ligase_CoA domain-containing protein OS=Populus alba OX=43335 GN=D5086_000003638... [more]
A0A218WGE72.2e-0759.62ATP citrate synthase OS=Punica granatum OX=22663 GN=LOC116193013 PE=4 SV=1[more]
BLAST of MELO3C031479 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06650.15.5e-1188.24ATP-citrate lyase B-1 [more]
AT5G49460.17.2e-1185.29ATP citrate lyase subunit B 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031479.1MELO3C031479.1mRNA