MELO3C031463 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031463
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr05: 19551234 .. 19553784 (+)
RNA-Seq Expression	MELO3C031463
Synteny	MELO3C031463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATTCATTTTCCCTTTCAAGAAACTCTAGCCTCACAAAACCCTAGCAACCAATTCTACTGCCGCTGCACGCCATCGTTTAGCCTTGTCGTCGCAAGTCGCACATCTTCTTCATCGTCCATCGTTTGAGCCATCTTGATTTCGTTTGTCTTCTCTCTCACCGTGCTCTCCTTAGCGTCAACTATCTCGTGCACCGACCAGCGGCCGCGATCGACCAACGTTGGAGAACCGTTGCTAGTCAAGTTGTTGACCGTTATCAAACGTCAGTCGAGCTGCGAACGAAACTCGAACCCACGCAAGCTGCCGCGTCTCTTAGTCAATTGTCGTTTCGTCAACCGCTGAGTCAACTCGAGCCATTTCTTCATTAGCCATCCGCCCGAGCCGCATGCGCCTGAGCGAGCCACCCCTACCCAAGTCGATTCCTTCCTCCAGCCGAGCCGCTGCGTCTGCCTTCCACTCTAGCCAAGCCATTTTGAGCTGAAAAGCTTATTTTAATCCTATTTAATCTATTTTTAGTAAGTTTTGATTGGATTTTTGGCATACCCAACAAAAATTAATTTCAGATCATAAATAATTTAATTTTGGATTAAATTGGTTAGATTTTAACTGGAAGCTGAGCTATGGATTTTTTTCCCAACCAAGGATAATTTGGACTCGACCTCAACTTTGGGTAAGTTGAATCAACTGGATATTTAGATCCTTAAGCAACTGTTAGTTAAGTTATTAAACTTAGCAATTGACCCTTATTGTTTAGGATTTATTCTTGGGAAGCTTGGTCTTGCTATCAGGATTACATTTGGTTAAGCTAATCTCCAGGTAAGAGATTCTCCCACTAAACCTTCGAATTGAAGTAAGAACTTGCATGTAAAGTTTTTCCATTATGCATTGAGGTAGCTAATATGCATAATGTGGTTATGTTTATGATGATTGATAGTCATGACTAGTCTATGCTTATGATGACTGATGGATCTGACTGAGTTATGTTAATGATGATTGATGATGTTGAAATAATGCATTAAACATTAATCTCATGTTTTAGAATGCTATGATTATTGTTCATGCCATGATTATGATGTTATGATATGTACATGTTATGGATATGGTATGTTGTTAGCTTTATCTATCAGAGCCGTATCCACATGGGTGTCCCTCGGGATCACCACCTTTTATGACTATATAGTCCGACGGGATCACCAGTCCAGTATGAAATGATATGTTACGAGTAACTTGACAGGGTCCCTCACAACTCGATTCTCTTAGTGTCCCTTTCGAGGTTCACTAAAGACCAGTTTGTTTTAGGTGTTCCTTGTGTTCACCGAAGACCAATTTTGTCCTAGGCGTTCATTTGGGTTCACCGAAGATCAGAGATGTTCCTATGGAATATAGATTGCGCGTGTTCGGGAACGTATCAGTTTAGAGGTACCACTTTACAGGACTCTAATAGGAAGTTAACAGACACCTAACTGGGCTTGTAGTAGGTCCCTTTCTGGGTATGTTTTTATACTCACTCTTTTATGTTTAATTTTTTTTCAGACAGAGGTAGAGATAAGAGTAGAGGCAAGCTGGTGAATGACAACAAGTGACCGTGGCATGCCATAGGGGAACACTTTTGCTTCTGCCTTATGTTATCAGATTTTGATTTCAATATTTATGCACTTTTATTTATTTTACTCTTTTAAAACTAGATAGGGACCGAGCTAGGAACTTACTTTTAGATTTATTTCTACTTACTTTAGTTTATTTATGATTTTAATGAATATTTGAGTTTTTAATTACGAAAATTTGATATTTTCAATTTTAATTTAAGAAATTTTATTTTCCTTTGAGTAGTAATGATAAGCTTAGTATCACTACTAGAAAAAGAATCTTTCTTGACTGTTGCAATTTTAATTTCTTGACAGTTTAAAAAAAACGTCAAGAAAGGGGTGATTTAAAAGAAAAACCGTCAAGAATTTTTGTGAAAAGGTGGAGGGTAGTCAATTTTTAGCTTTCTCGACAGTTTTGAAACGTTATGTAATATGCATTTTTTCTTGACATTTTAAAACCGTCAAGAATTTTTATCAATTCGACATTCTTGACGTTTTTTAAACGTCAAATGATATGTACTTATCCTTGACGTTTTAAAAATATCAAGTAATATTGATTAAATTCTTGACGTTTTAAAACGTCAAGAATTTTTATGAAAAGGCAGAGGGGAGTAATTTTTAAAATTTCTTGACAATTTTTAAACGTCAAGTAAGATACTTTTCCTTGACGTTTTAAAAACCTCAAGAATTACTAAATAATTAAAAAATAAAAACTTAATTTTTTTATAAGAAAGCCTAATTTTTCCCTTTCTTTTTACTTTTTCCCTTTCCCTCCATATAAAACACAAATTTCCCTCTTTCTTTCTCACAACCCACACGATCCCAAACTCACCCATCCAGAACGTCGACAACCCGAACATCGTCGGACATCGTGGAACGTCGTCGACACCGCCAATGCTTCCCGTGCTCACCCATCCCGAACGATGCCGAACACCGAATGTCGAACGCTAACTTCCATTTGA

mRNA sequence

ATGACTATTCATTTTCCCTTTCAAGAAACTCTAGCCTCACAAAACCCTAGCAACCAATTCTACTGCCGCTGCACGCCATCGTTTAGCCTTGTCGTCGCAAGTCGCACATCTTCTTCATCCGTCAACTATCTCGTGCACCGACCAGCGGCCGCGATCGACCAACGTTGGAGAACCGTTGCTAGTCAAGTTGTTGACCGTTATCAAACGTCAGTCGAGCTGCGAACGAAACTCGAACCCACGCAAGCTGCCGCGTCTCTTAGTCAATTGTCGTTTCGTCAACCGCTGAATTTTAACTGGAAGCTGAGCTATGGATTTTTTTCCCAACCAAGGATAATTTGGACTCGACCTCAACTTTGGGATTTATTCTTGGGAAGCTTGGTCTTGCTATCAGGATTACATTTGGTTAAGCTAATCTCCAGAGCCGTATCCACATGGGTGTCCCTCGGGATCACCACCTTTTATGACTATATAGTCCGACGGGATCACCAGTCCAACAGAGGTAGAGATAAGAGTAGAGGCAAGCTGCCTAATTTTTCCCTTTCTTTTTACTTTTTCCCTTTCCCTCCATATAAAACACAAATTTCCCTCTTTCTTTCTCACAACCCACACGATCCCAAACTCACCCATCCAGAACGTCGACAACCCGAACATCGTCGGACATCGTGGAACGTCGTCGACACCGCCAATGCTTCCCGTGCTCACCCATCCCGAACGATGCCGAACACCGAATGTCGAACGCTAACTTCCATTTGA

Coding sequence (CDS)

ATGACTATTCATTTTCCCTTTCAAGAAACTCTAGCCTCACAAAACCCTAGCAACCAATTCTACTGCCGCTGCACGCCATCGTTTAGCCTTGTCGTCGCAAGTCGCACATCTTCTTCATCCGTCAACTATCTCGTGCACCGACCAGCGGCCGCGATCGACCAACGTTGGAGAACCGTTGCTAGTCAAGTTGTTGACCGTTATCAAACGTCAGTCGAGCTGCGAACGAAACTCGAACCCACGCAAGCTGCCGCGTCTCTTAGTCAATTGTCGTTTCGTCAACCGCTGAATTTTAACTGGAAGCTGAGCTATGGATTTTTTTCCCAACCAAGGATAATTTGGACTCGACCTCAACTTTGGGATTTATTCTTGGGAAGCTTGGTCTTGCTATCAGGATTACATTTGGTTAAGCTAATCTCCAGAGCCGTATCCACATGGGTGTCCCTCGGGATCACCACCTTTTATGACTATATAGTCCGACGGGATCACCAGTCCAACAGAGGTAGAGATAAGAGTAGAGGCAAGCTGCCTAATTTTTCCCTTTCTTTTTACTTTTTCCCTTTCCCTCCATATAAAACACAAATTTCCCTCTTTCTTTCTCACAACCCACACGATCCCAAACTCACCCATCCAGAACGTCGACAACCCGAACATCGTCGGACATCGTGGAACGTCGTCGACACCGCCAATGCTTCCCGTGCTCACCCATCCCGAACGATGCCGAACACCGAATGTCGAACGCTAACTTCCATTTGA

Protein sequence

MTIHFPFQETLASQNPSNQFYCRCTPSFSLVVASRTSSSSVNYLVHRPAAAIDQRWRTVASQVVDRYQTSVELRTKLEPTQAAASLSQLSFRQPLNFNWKLSYGFFSQPRIIWTRPQLWDLFLGSLVLLSGLHLVKLISRAVSTWVSLGITTFYDYIVRRDHQSNRGRDKSRGKLPNFSLSFYFFPFPPYKTQISLFLSHNPHDPKLTHPERRQPEHRRTSWNVVDTANASRAHPSRTMPNTECRTLTSI

Homology

[Close]

BLAST of MELO3C031463 vs. NCBI nr
Match: KAA0062438.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27444.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 7.6e-07
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 127 VLLSGLHLVKLISRAVSTWVSLGITTFYDYIVRRDHQSNRGRDKSRGKLPN 178
           V +  + L+ L  R V  WVS GITTFYD IVRRDHQS+RGRDK +GKL N
Sbjct: 261 VPMQAVVLLVLAIRFVPAWVSFGITTFYDCIVRRDHQSSRGRDKGKGKLAN 311

[Close]

BLAST of MELO3C031463 vs. ExPASy TrEMBL
Match: A0A5A7V4C7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001430 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-07
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 127 VLLSGLHLVKLISRAVSTWVSLGITTFYDYIVRRDHQSNRGRDKSRGKLPN 178
           V +  + L+ L  R V  WVS GITTFYD IVRRDHQS+RGRDK +GKL N
Sbjct: 261 VPMQAVVLLVLAIRFVPAWVSFGITTFYDCIVRRDHQSSRGRDKGKGKLAN 311

[Close]

BLAST of MELO3C031463 vs. ExPASy TrEMBL
Match: A0A5D3D7Z8 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00560 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-04
Identity = 55/166 (33.13%), Postives = 75/166 (45.18%), Query Frame = 0


Query: 12  ASQNPSNQFYCRCTPSFSLVVASRTSSSSVNYLVHRPAAAIDQRWRTVASQVVDRYQTSV 71
           AS NPS+ F            + +T + +V+Y+  +P   +       +         S 
Sbjct: 607 ASPNPSHPFLSDS--------SLQTQTRAVSYVCGKPECLLPLSHACASPH-------SC 666

Query: 72  ELRTKLEPTQAAASLSQL------------SFRQPLNFNWKLSYGFFSQPRIIWTRPQLW 131
           EL + LEP +A +S S L             F    NF  KL +  F +PRI        
Sbjct: 667 ELLSTLEP-RALSSHSLLPSRVLTLTESTSEFLLQSNFIQKLEFWVFPKPRI-------- 726

Query: 132 DLFLGSLVLLSGLHLVKLISRAVSTWVSLGITTFYDYIVRRDHQSN 166
              LGS   L  + L+ L  R V TWVS GITTFYDY+VRRDH+S+
Sbjct: 727 --NLGSSSTL--VVLLALAIRVVPTWVSFGITTFYDYVVRRDHKSS 744

The following BLAST results are available for this feature:

BLAST of MELO3C031463 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062438.1	7.6e-07	62.75	gag/pol protein [Cucumis melo var. makuwa] >TYK27444.1 gag/pol protein [Cucumis ...	[more]

BLAST of MELO3C031463 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C031463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4C7	3.7e-07	62.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0014...	[more]
A0A5D3D7Z8	5.0e-04	33.13	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]

BLAST of MELO3C031463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031463.1	MELO3C031463.1	mRNA