MELO3C031433 (gene) Melon (DHL92) v4

Overview
NameMELO3C031433
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr05: 17116989 .. 17119841 (+)
RNA-Seq ExpressionMELO3C031433
SyntenyMELO3C031433
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCGATTGTATCTTTTGTTTGTGACTGTTAAATGTCAAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTCTTGTAACTTTTCATTCTCAGTATGTCAACCTCAAACTGTGCCCTGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAACGGAGCTGGTGTCGAGGGGATGGAAATCGGATAATGGTACGTTTCGGCCAGGGTACCTGGTCCCGTAGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCACGCAACGACTGTAATTGACAGTAGAATAAAGACACTGAAGCAGACATTCCAGGCCATCGCCGAAATGCGGGGTCCAGCGTGTAGTGGCCTTGGGTGGAACGATAAAGAGAAATGTATCATTGCGGAGAAAGGATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACATCACACAACATTTGCAATGTACATTTACTTAACAATTTTTCTCTCAATACACATAAGTGATCTTTTTTTCTCCGCAGTCGTATCCTGCAGCGAAGGAACTCCTGAACAAACTGTTTCCGTATTACGACGAACTTACATATGTGTTCGGTCGCGATAAGGCGACGGGTCGGTTCGCTGAGACATTTGCCGACGTGGGTCTAACGAGCTTAACGGGTATGACGGATTTGATATGGGGGATGGAAATGAGGAGTTCTCGCCCGTGAACAGCCAGGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAAAGGAAGAGGGGAAGTCAGCGAAAGGTGGATGTTGAAGGCATACATCTGGCGCTCAACCAAACAAACGAGCAACTCATGATGATTGCAGAGTGGCCTACATGCGCCCTTGCCAATGACAACCATGTGCGCATGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAATGGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGGTTTCATACTCATGCATGAGGATGAGGGGGAGGGATTTTATAGAGTCCCCCTACGAGACATCACGGGATAGTCTATGTTTATACCAACCTGGGTTGCTTCTTATTAGCTTACTTTTTTTTTTTTCTGTATGATGTTGACTGTTTATGTTTTTTCTATTGTAGACAACTATCTTTTTCCTTCATAATGTTTATCTAAAATTAAGGAAAATAGTCACAATTTCACCCAAGCGTTATAACAGGTAATTATATATGTTCAAAATAGGGGGACATCGCTATCGCCACTTACAAATAGGAAATAATTAATTTGTCTTTCTAAAAAATGAATTTTAATAAATTTTTCACAATATGTTCAGAAATTAATTTCAAATTGGACAACTGTCTTTACTAATTTAATAACATTACACATACAATAAATTATTTGCAATAAGACGGGTTTGACGCTTTCGTAAAAAAGTATGCAATAAGAATTTTTTTTATCATATTTACAATCTCATTTAAAAAATATTATACTACATAAAAAAAATTTATTAATCCAACCCATATAACACTTTCCGCAAATAAATTTTATCATAAATTTCACATAAACCTACCCACCTAACCCTTCCCCCAAACACATCTTATCATAAAATCTCCATTAACTCTTCCCACCTAACCCTTCCCCCAAACACATATTATCATAAAACTACATTTCTAAACCCTTCCCCCAAACTAGTTTTATCATAACACTAACCCTTCCTTAAATCAACCCTTCCCCCAAATGCACCTTAAGACATTTATCTGATAATATAAATAGTCAAAGTCAGAAAGAAAAAGGCTTGCTAGAAATAATTACTACCCTTCCACTTGTGAGCCAACCTCTTCCACTTTGTGATATACGACCATCATCAAGTAGTACTCTCAAACTCTTTCCCTGTGGTAGCAACATTTACTTCCAGTCCATTCCCCTTACCTATGGTAAGGTTCTGGAATCACTGGAGCTCATTTAAAATAAAGCTCACCTGATTTTTCTCATTGATGGGACCACCATTTACTTCAGCAATATTAAAATGCATCATCATGTCCATGACATGTTCTCTAACAGAGGTCCCTTCCTTCATTTGCTTGGTGTAAATATACTTAATTGCTTCGTGTCTGAGAGACCATGAAGGCTAACCAAACATCTCCATCAATGAATCCATAATATCTTTAGCCATGGCTAAGGATTCATGTTTCTTTGCCAAAACATCAGACATGCTGGCAAGAATATAAACACGGGCCTTTTCATTGGCCTTAACCCATCGATCATATGCTTCTCAAACATTTCGATTAGCATTCGAGGCAAAGGCTTGAAGATGTTCCTCAATTAAGACAAACCTTAAATCATCTATGACTAGTATTGTATTTAAGTTTGATTTTCAAGTAGCATAATTATCGCCATTAACTTTCTGAGAAGCTAAGAGTTGTACTATTGAGTTGTTCATGCTGGAAAAGTAAAATATACTCTATTTAGTAAAAAACTATAATCCTTTAAGAACCAATTAATTTAGCAAATATTAATAACGTACCCAGTATTATTATGTTTTACAACGATATTTCAAAGGTTTAGAAGAACCTCTACTGAAGGTTAGTCGATTACTCTTCCTTTGAACCATGACAATCTTGACCAAATGCTAACTCCTAAATATCTCATACTCGCTTAGCACTTAGTTACCGCTAGATTGGTTGAGAATATACTAACAACTTAGTAATTCTTGTAAGTGTAACCTTTCATTTTCAGATCTCAAAGATAAGAATCATTATGTTTCGAAAGTGAAAAGACAATATGAAAACTAA

mRNA sequence

CATCGATTGTATCTTTTGTTTGTGACTGTTAAATGTCAAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTCTTGTAACTTTTCATTCTCAGTATGTCAACCTCAAACTGTGCCCTGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAACGGAGCTGGTGTCGAGGGGATGGAAATCGGATAATGGTACGTTTCGGCCAGGGTACCTGGTCCCGTAGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCACGCAACGACTGTAATTGACAGTAGAATAAAGACACTGAAGCAGACATTCCAGGCCATCGCCGAAATGCGGGGTCCAGCGTGTAGTGGCCTTGGGTGGAACGATAAAGAGAAATGTATCATTGCGGAGAAAGGATTATTTGATAATTGGGTTAGGTCGTATCCTGCAGCGAAGGAACTCCTGAACAAACTGTTTCCGTATTACGACGAACTTACATATGTGTTCGGTCGCGATAAGGCGACGGGTCGGTTCGCTGAGACATTTGCCGACGTGGGTCTAACGAGCTTAACGGGTATGACGGATTTGATATGGGGGATGGAAATGAGGAGTTCTCGCCCGTGAACAGCCAGGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAAAGGAAGAGGGGAAGTCAGCGAAAGGTGGATGTTGAAGGCATACATCTGGCGCTCAACCAAACAAACGAGCAACTCATGATGATTGCAGAGTGGCCTACATGCGCCCTTGCCAATGACAACCATGTGCGCATGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAATGGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGACAACTATCTTTTTCCTTCATAATGTTTATCTAAAATTAAGGAAAATAGTCACAATTTCACCCAAGCGTTATAACAGTCAAAGTCAGAAAGAAAAAGGCTTGCTAGAAATAATTACTACCCTTCCACTTGTGAGCCAACCTCTTCCACTTTGTGATATACGACCATCATCAAGTAGTACTCTCAAACTCTTTCCCTGTGGTAGCAACATTTACTTCCAGTCCATTCCCCTTACCTATGATCTCAAAGATAAGAATCATTATGTTTCGAAAGTGAAAAGACAATATGAAAACTAA

Coding sequence (CDS)

ATGGGGGATGGAAATGAGGAGTTCTCGCCCGTGAACAGCCAGGGGATTGACCTGTCGCAGGACGATGTACACGCATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAAAGGAAGAGGGGAAGTCAGCGAAAGGTGGATGTTGAAGGCATACATCTGGCGCTCAACCAAACAAACGAGCAACTCATGATGATTGCAGAGTGGCCTACATGCGCCCTTGCCAATGACAACCATGTGCGCATGGAATTCTTCTGCATATTGCGTGAGATGCTAGAACTAATGGTTTGGATAGGGCGCTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGGGACAACTATCTTTTTCCTTCATAATGTTTATCTAAAATTAAGGAAAATAGTCACAATTTCACCCAAGCGTTATAACAGTCAAAGTCAGAAAGAAAAAGGCTTGCTAGAAATAATTACTACCCTTCCACTTGTGAGCCAACCTCTTCCACTTTGTGATATACGACCATCATCAAGTAGTACTCTCAAACTCTTTCCCTGTGGTAGCAACATTTACTTCCAGTCCATTCCCCTTACCTATGATCTCAAAGATAAGAATCATTATGTTTCGAAAGTGAAAAGACAATATGAAAACTAA

Protein sequence

MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTTIFFLHNVYLKLRKIVTISPKRYNSQSQKEKGLLEIITTLPLVSQPLPLCDIRPSSSSTLKLFPCGSNIYFQSIPLTYDLKDKNHYVSKVKRQYEN
Homology
BLAST of MELO3C031433 vs. NCBI nr
Match: TYK07718.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 5.3e-49
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 19  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 78
           + DDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL
Sbjct: 100 ADDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 159

Query: 79  ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTT 121
           ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG +
Sbjct: 160 ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGVS 201

BLAST of MELO3C031433 vs. NCBI nr
Match: KAA0049990.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 6.1e-45
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 0

Query: 19  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 78
           + DDVHASRPS ASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL
Sbjct: 100 ADDDVHASRPSRASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 159

Query: 79  ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTT 121
           ANDNHVRMEFF IL EMLELMVWIGRYCK IFCLVWTTFG +
Sbjct: 160 ANDNHVRMEFFRILHEMLELMVWIGRYCKSIFCLVWTTFGVS 201

BLAST of MELO3C031433 vs. NCBI nr
Match: KAA0067583.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-38
Identity = 86/120 (71.67%), Postives = 92/120 (76.67%), Query Frame = 0

Query: 1   MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLAL 60
           MGDGNE+F PV SQG+D+SQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE I+L L
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIYLVL 225

Query: 61  NQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTT 120
           +QTNEQL  IAEWP   LANDNH    F         L VWIGRYCKGIFCLVWTTFG +
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHCARNFSTYCVRCQNLRVWIGRYCKGIFCLVWTTFGVS 285

BLAST of MELO3C031433 vs. NCBI nr
Match: KAA0054705.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-36
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = 0

Query: 1   MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLAL 60
           MGDGNE+F PV SQGIDLSQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE IHLAL
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  NQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL 99
           +QTNEQL  IAEWP C LANDNHVR EFFCILREM EL
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPEL 239

BLAST of MELO3C031433 vs. NCBI nr
Match: KAA0031723.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-36
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 0

Query: 2   GDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALN 61
           GDGNEEF PV SQGIDLSQDDV ASRPSCASEGR GSSGSKRKRGSQR +DVEGIHLAL+
Sbjct: 63  GDGNEEFPPVYSQGIDLSQDDVRASRPSCASEGRIGSSGSKRKRGSQRDLDVEGIHLALD 122

Query: 62  QTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL 99
           Q NEQL MIAEWP  ALANDNHVRMEFF ILREM EL
Sbjct: 123 QANEQLRMIAEWPAHALANDNHVRMEFFRILREMPEL 159

BLAST of MELO3C031433 vs. ExPASy TrEMBL
Match: A0A5D3C970 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G001440 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 19  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 78
           + DDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL
Sbjct: 100 ADDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 159

Query: 79  ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTT 121
           ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFG +
Sbjct: 160 ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGVS 201

BLAST of MELO3C031433 vs. ExPASy TrEMBL
Match: A0A5A7U3X7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001660 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.9e-45
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 0

Query: 19  SQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 78
           + DDVHASRPS ASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL
Sbjct: 100 ADDDVHASRPSRASEGRTGSSGSKRKRGSQRKVDVEGIHLALNQTNEQLMMIAEWPTCAL 159

Query: 79  ANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTT 121
           ANDNHVRMEFF IL EMLELMVWIGRYCK IFCLVWTTFG +
Sbjct: 160 ANDNHVRMEFFRILHEMLELMVWIGRYCKSIFCLVWTTFGVS 201

BLAST of MELO3C031433 vs. ExPASy TrEMBL
Match: A0A5A7VHM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00480 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 9.1e-39
Identity = 86/120 (71.67%), Postives = 92/120 (76.67%), Query Frame = 0

Query: 1   MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLAL 60
           MGDGNE+F PV SQG+D+SQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE I+L L
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIYLVL 225

Query: 61  NQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLELMVWIGRYCKGIFCLVWTTFGTT 120
           +QTNEQL  IAEWP   LANDNH    F         L VWIGRYCKGIFCLVWTTFG +
Sbjct: 226 DQTNEQLRQIAEWPARNLANDNHCARNFSTYCVRCQNLRVWIGRYCKGIFCLVWTTFGVS 285

BLAST of MELO3C031433 vs. ExPASy TrEMBL
Match: A0A5D3B6Y0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00160 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 83/98 (84.69%), Postives = 85/98 (86.73%), Query Frame = 0

Query: 1   MGDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLAL 60
           MGDGNE+F PV SQGIDLSQDDV ASRPS ASEGRTGSSGSKRKRGSQR  DVE IHLAL
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  NQTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL 99
           +QTNEQL  IAEWP C LANDNHVR EFFCILREM EL
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPEL 239

BLAST of MELO3C031433 vs. ExPASy TrEMBL
Match: A0A5A7SNB3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005110 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.2e-36
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 0

Query: 2   GDGNEEFSPVNSQGIDLSQDDVHASRPSCASEGRTGSSGSKRKRGSQRKVDVEGIHLALN 61
           GDGNEEF PV SQGIDLSQDDV ASRPSCASEGR GSSGSKRKRGSQR +DVEGIHLAL+
Sbjct: 63  GDGNEEFPPVYSQGIDLSQDDVRASRPSCASEGRIGSSGSKRKRGSQRDLDVEGIHLALD 122

Query: 62  QTNEQLMMIAEWPTCALANDNHVRMEFFCILREMLEL 99
           Q NEQL MIAEWP  ALANDNHVRMEFF ILREM EL
Sbjct: 123 QANEQLRMIAEWPAHALANDNHVRMEFFRILREMPEL 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07718.15.3e-4996.08retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049990.16.1e-4592.16retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067583.11.9e-3871.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054705.16.7e-3684.69retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon p... [more]
KAA0031723.18.8e-3686.60retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9702.6e-4996.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3X72.9e-4592.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VHM39.1e-3971.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3B6Y03.2e-3684.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SNB34.2e-3686.60Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031433.1MELO3C031433.1mRNA