MELO3C031398.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031398.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionABC transporter B family member 19-like
Locationchr05: 15185315 .. 15188058 (-)
RNA-Seq ExpressionMELO3C031398.jh1
SyntenyMELO3C031398.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCGTCCATTTTTTCGTCTTCTCCGTCGCAGATCGTCGCAAGCCGCTGCGTCTCCTCCTTTGTTAGTCGTCGGCCGTCGTTCGAGTCACGACGGAGCTTCGCATTCGTCTGCTATTTTTCTACGATTTTCTGTCGATCCGTCGGCTGTCGAATCAATCCTTCGTCGATCCATCAGCTGCGAATCACTTGAATTGTGATTAAATATAATAATATTTAATAATATATTATGAAGACTTCAGTTGAGTTGGATCCGACCTCAACTTTGAGTAAGTTAAATCAACTTGAATTTTGAATCTTAAATTAACTGCAAATTAAGTTTTCATCTTAGTATTTTTATTCTTACTGTTTAGAATTTTCTTGAGAAGCTCGACTTTGCTGTTAGGAGTGTATTTCCATGAATTAAGCTAATCTCCAGGTAATAGATTCTCCTACTAGACCTTCGAATTGAAGTATGAGCTAGCATGTAACTTTTTCTATTATGCATTAATGTAGCTAATATGCATAGTGTGTTTATGGTTTATGATGATTGGTAGTCATGACTAGTCTATGCTTATGATGACTATTAGTTCTGACTGAGTTATGTTGATGATGACGATTGATGTTGATGTTATGCATGAATTATTAATCTCATGATTAAGAATGCTATTGTTAATATTCATGTCATGATTATGATGTTATATTATGCTACATGCTATGGATAGGTTGTATTGTTGGCTTTATCTATTACAGTCGTATCCACATGGATGTCCCTCGAGATCACCACCTTTTATGACTATGTAGTCCGATGGGATCTCTAGTCCAACATGAGATGATATGTTACGAGTGAATCGATTGGGTCACTCACAACCCAATTGTCTTAGTGTTTCTTTCGAGGTTCACTAAAGACCAGTTTGTCCTAGGTGTTCCTTGTGTTCCCCGAAGATCAATTGTGTTCTAGATGTTCCTTTGGGTTCATTGAAGACTAGAGATGTTCCTACGGGATTACAGATTGCGCGTGTTTGGGAACGTGTCAGTTTAACGGTACCACTTTACAGAACTCTAATAGGAAGTTAATATACACCTAGCGGGGCTAGTAGTAGGTCCTTTACTGAGTATATTTTTATACTCATTCCTTTATGTTTAATTGTTTAGGCAGAGGTAGAGGTAAGAGTAGAGGAAAGCTTGCAAGTAACAAGAAGTGGCCATGACGTGTCATTGGGGAACACTTTTGCTTCCACCTTATGTTATTAGATTTTGATTTCAGTATTTATGCACTTTTATTTATTTTACTCTTTTAAAACTAGATAGGGCTCGAGCTAGGATCTTACTTATAGATTTATTTCTACTTACTTTAGCTTATTTATGATTTTAATGAATATTTGAGTTTTTAAATTAAGGAGTTTGTTATTTTCTTTTTGAATTTAAGAAAGTTTTATCATCTTTTAGGTAGTAATGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACACTACATCATTGCATTTTTTTTCCAGTATTATATAATATTGTCTTCTAAACTAAATCACATACTTAGAACTTAAGTGATAAATCTACGAATGACTAAATCACGTTATCTCATATGTTGTGTTAAAATAGATTGAGCTTTCATATAACATATACATATTCAGTAATGGACTTCTGATAACCTAAATTATTAGGCAAAAGTGAGCATTTGTAGTGGTCAAAGCGTAGATGCGCTTCAAAAAAGGTGCAATTGCGCTCAAGTCATGCTTTTGTAGTACATTTGTGCTAAAAAACAACGCTCATTAGGCTCGTGAATTGATCGTAAAGCGCAACTCCAGTGTCAGTTGTGCGCCTTCTGGTGTAATTTCTTTGATAGAGCTTCAATTGGTTGATTTTAGTTGTGTTAGCTCCGTAATACGACTCTATCTCTTTGATCGTTAATGCCTAAAAAATAACATATTTAAGCACATTTAATCGACTAATAATCTTAAATCAGGCTAAGAAACTAGCACTTTTATGACGCTAATAAATTGGAATAACTAAGAACCTGAAGATATTGTGGAGATCATGTGAATCTAGTCAAGACATGAAAGTGTTGTGTTAAATACAAATTATTTGCTTTAGATAGATTGTAAGAAAACTACAATAATCGTCTCAACATGATACAACGACTATAGTCTAATATTGGATTCTTCCGTTGAAGGATTACTTAGCATTTCTCGTGCGGTTTAATCAGATTAATTTTCTGTGATCAAATTCATGTAAGACTTCTACGCCCGTTGTTTGCATTATGTGTACTCATGTTGGATGGCTTGTTTAAAATGAAAATTCTAAGATTTGTAAAATAAAAGTTACCCGATTGAAAAGTTCTGTGTATGGAGATTTATAGTAGTTGCTACTAGGCCCAATATGATTGCATTGTAAAAGTTAGAATTGTAAGGATTAGATGTCCATTGACCAACTGTAGTGTTTGACATTTCTATGTTCAAGTGTACACTAAATTGAAGCATATTTTTTTAAGTTTTTATCTCAATTTGGCATCCCTTATTTATCTTTTAGTTTTACCTTAGCTTATTTTAAAAAGTTTCTTTGTGTGCTTTACTAGTTTTTATTCTTATAAGAAGGTGAAATATGCACGTATTTATTTAATGTTTATGTTTATGCTTATGCATTTTCTATAATGAATGTTAACTAAGGTTCATTTTCTTCAAATTTGCAGGTAATGAAGAATCCATGGATCATGGTATTGATCAAGTTCATTTATGCGTCAGTTTGA

mRNA sequence

ATGCGGCGTCCATTTTTTCGTCTTCTCCGTCGCAGATCGTCGCAAGCCGCTGCGTCTCCTCCTTTGTTAGTCGTCGGCCGTCGTTCGAGTCACGACGGAGCTTCGCATTCGTCTGCTATTTTTCTACGATTTTCTGTCGATCCGTCGGCTGTCGAATCAATCCTTCGTCGATCCATCAGCTGCGAATCACTTGAATTACCAGTTTGTCCTAGGTGTTCCTTGTGTTCCCCGAAGATCAATTGTGTTCTAGATGTTCCTTTGGGTTCATTGAAGACTAGAGATGTTCCTACGGGATTACAGATTGCGCGTGTTTGGGAACGTGTCAGTTTAACGGCAGAGGTAGAGGTAAGAGTAGAGGAAAGCTTGCAAGTAACAAGAAGTGGCCATGACGTGTCATTGGGGAACACTTTTGCTTCCACCTTATGTTATTAGATTTTGATTTCAGTAATGAAGAATCCATGGATCATGGTATTGATCAAGTTCATTTATGCGTCAGTTTGA

Coding sequence (CDS)

ATGCGGCGTCCATTTTTTCGTCTTCTCCGTCGCAGATCGTCGCAAGCCGCTGCGTCTCCTCCTTTGTTAGTCGTCGGCCGTCGTTCGAGTCACGACGGAGCTTCGCATTCGTCTGCTATTTTTCTACGATTTTCTGTCGATCCGTCGGCTGTCGAATCAATCCTTCGTCGATCCATCAGCTGCGAATCACTTGAATTACCAGTTTGTCCTAGGTGTTCCTTGTGTTCCCCGAAGATCAATTGTGTTCTAGATGTTCCTTTGGGTTCATTGAAGACTAGAGATGTTCCTACGGGATTACAGATTGCGCGTGTTTGGGAACGTGTCAGTTTAACGGCAGAGGTAGAGGTAAGAGTAGAGGAAAGCTTGCAAGTAACAAGAAGTGGCCATGACGTGTCATTGGGGAACACTTTTGCTTCCACCTTATGTTATTAG

Protein sequence

MRRPFFRLLRRRSSQAAASPPLLVVGRRSSHDGASHSSAIFLRFSVDPSAVESILRRSISCESLELPVCPRCSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRSGHDVSLGNTFASTLCY
Homology
[Close]
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match: KAA0066997.1 (hypothetical protein E6C27_scaffold38G00260 [Cucumis melo var. makuwa] >TYJ96806.1 hypothetical protein E5676_scaffold233G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 7.36e-15
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 70  PRCSLCSP----KINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVT 129
           PR S C P    K + VL VPLGS KTRDVPTG QIARV ER SL AEVEVR EES ++T
Sbjct: 12  PRLSECFPRDSLKTSFVLGVPLGSPKTRDVPTGSQIARVRERASLGAEVEVRAEESWRMT 71

Query: 130 RSGHDV 131
           RS  D+
Sbjct: 72  RSDRDI 77

[Close]
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match: KAA0061424.1 (ABC transporter B family member 19-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 3.34e-12
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 127
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL AEVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGAEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match: TYK04651.1 (ABC transporter B family member 19-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.17e-11
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 127
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL  EVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGVEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match: KAA0039203.1 (hypothetical protein E6C27_scaffold121G001210 [Cucumis melo var. makuwa] >TYK18470.1 hypothetical protein E5676_scaffold607G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 6.43e-11
Identity = 43/81 (53.09%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 50  AVESILRRSISCESLELPVCPRCSLCSP---KINCVLDVPLGSLKTRDVPTGLQIARVWE 109
           A ESIL R++          P+C   SP   K   VLDVPLGS KTRDVPTG QI RV E
Sbjct: 34  ATESILTRAVFAF-------PKCLSISPGYTKDQFVLDVPLGSPKTRDVPTGSQITRVRE 93

Query: 110 RVSLTAEVEVRVEESLQVTRS 127
             SL  EVEVR + S ++TRS
Sbjct: 94  HASLGVEVEVRAKGSWRLTRS 107

[Close]
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match: KAA0067496.1 (hypothetical protein E6C27_scaffold50G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 7.13e-10
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 71  RCSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTR 126
           +CSLCSPK + VL VPLGS KTRD P   QIARV E  SL   V+VR +ES ++ R
Sbjct: 6   QCSLCSPKTSFVLGVPLGSPKTRDDPMESQIARVREHASLEVGVKVRAQESWRMIR 61

[Close]
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BCW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00250 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.57e-15
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 70  PRCSLCSP----KINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVT 129
           PR S C P    K + VL VPLGS KTRDVPTG QIARV ER SL AEVEVR EES ++T
Sbjct: 12  PRLSECFPRDSLKTSFVLGVPLGSPKTRDVPTGSQIARVRERASLGAEVEVRAEESWRMT 71

Query: 130 RSGHDV 131
           RS  D+
Sbjct: 72  RSDRDI 77

[Close]
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V2E7 (ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00010 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.62e-12
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 127
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL AEVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGAEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BY90 (ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00030 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.67e-12
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 72  CSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTRS 127
           CSL SPK + V+ V L S KTRDVPTGLQIA VWER SL  EVE+R E S ++TR+
Sbjct: 244 CSLWSPKTSFVIGVSLSSPKTRDVPTGLQIAHVWERASLGVEVEIRAEASWRMTRT 299

[Close]
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D4L8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00400 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.11e-11
Identity = 43/81 (53.09%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 50  AVESILRRSISCESLELPVCPRCSLCSP---KINCVLDVPLGSLKTRDVPTGLQIARVWE 109
           A ESIL R++          P+C   SP   K   VLDVPLGS KTRDVPTG QI RV E
Sbjct: 34  ATESILTRAVFAF-------PKCLSISPGYTKDQFVLDVPLGSPKTRDVPTGSQITRVRE 93

Query: 110 RVSLTAEVEVRVEESLQVTRS 127
             SL  EVEVR + S ++TRS
Sbjct: 94  HASLGVEVEVRAKGSWRLTRS 107

[Close]
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VLX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00020 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.45e-10
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 71  RCSLCSPKINCVLDVPLGSLKTRDVPTGLQIARVWERVSLTAEVEVRVEESLQVTR 126
           +CSLCSPK + VL VPLGS KTRD P   QIARV E  SL   V+VR +ES ++ R
Sbjct: 6   QCSLCSPKTSFVLGVPLGSPKTRDDPMESQIARVREHASLEVGVKVRAQESWRMIR 61

The following BLAST results are available for this feature:
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066997.17.36e-1565.15hypothetical protein E6C27_scaffold38G00260 [Cucumis melo var. makuwa] >TYJ96806... [more]
KAA0061424.13.34e-1266.07ABC transporter B family member 19-like [Cucumis melo var. makuwa][more]
TYK04651.11.17e-1164.29ABC transporter B family member 19-like [Cucumis melo var. makuwa][more]
KAA0039203.16.43e-1153.09hypothetical protein E6C27_scaffold121G001210 [Cucumis melo var. makuwa] >TYK184... [more]
KAA0067496.17.13e-1058.93hypothetical protein E6C27_scaffold50G00020 [Cucumis melo var. makuwa][more]
BLAST of MELO3C031398.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BCW43.57e-1565.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2E71.62e-1266.07ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BY905.67e-1264.29ABC transporter B family member 19-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3D4L83.11e-1153.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VLX43.45e-1058.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C031398.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031398.jh1.t1MELO3C031398.jh1.t1mRNA